Strain Fitness in Variovorax sp. SCN45 around GFF3553

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3552 and GFF3553 are separated by 28 nucleotidesGFF3553 and GFF3554 are separated by 35 nucleotides GFF3552 - Hsp90xo protein, at 58,420 to 60,282 GFF3552 GFF3553 - FOG: TPR repeat, at 60,311 to 62,641 GFF3553 GFF3554 - FIG01121542: hypothetical protein, at 62,677 to 65,034 GFF3554 Position (kb) 60 61 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 59.444 kb on + strand, within GFF3552at 59.731 kb on + strand, within GFF3552at 59.731 kb on + strand, within GFF3552at 59.732 kb on - strand, within GFF3552at 59.732 kb on - strand, within GFF3552at 59.732 kb on - strand, within GFF3552at 59.789 kb on - strand, within GFF3552at 60.067 kb on + strand, within GFF3552at 60.067 kb on + strand, within GFF3552at 60.067 kb on + strand, within GFF3552at 60.068 kb on - strand, within GFF3552at 60.381 kb on - strandat 60.381 kb on - strandat 60.497 kb on + strandat 60.497 kb on + strandat 60.497 kb on + strandat 60.497 kb on + strandat 60.498 kb on - strandat 60.498 kb on - strandat 60.575 kb on + strand, within GFF3553at 60.576 kb on - strand, within GFF3553at 60.576 kb on - strand, within GFF3553at 60.576 kb on - strand, within GFF3553at 60.650 kb on + strand, within GFF3553at 60.650 kb on + strand, within GFF3553at 60.650 kb on + strand, within GFF3553at 60.650 kb on + strand, within GFF3553at 60.651 kb on - strand, within GFF3553at 60.651 kb on - strand, within GFF3553at 60.651 kb on - strand, within GFF3553at 60.651 kb on - strand, within GFF3553at 60.651 kb on - strand, within GFF3553at 60.651 kb on - strand, within GFF3553at 60.809 kb on + strand, within GFF3553at 60.810 kb on - strand, within GFF3553at 60.810 kb on - strand, within GFF3553at 61.538 kb on + strand, within GFF3553at 61.539 kb on - strand, within GFF3553at 61.539 kb on - strand, within GFF3553at 61.539 kb on - strand, within GFF3553at 61.746 kb on - strand, within GFF3553at 61.746 kb on - strand, within GFF3553at 61.842 kb on - strand, within GFF3553at 62.048 kb on + strand, within GFF3553at 62.048 kb on + strand, within GFF3553at 62.049 kb on - strand, within GFF3553at 62.049 kb on - strand, within GFF3553at 62.228 kb on + strand, within GFF3553at 62.228 kb on + strand, within GFF3553at 62.228 kb on + strand, within GFF3553at 62.228 kb on + strand, within GFF3553at 62.228 kb on + strand, within GFF3553at 62.229 kb on - strand, within GFF3553at 62.229 kb on - strand, within GFF3553at 62.229 kb on - strand, within GFF3553at 62.229 kb on - strand, within GFF3553at 62.229 kb on - strand, within GFF3553at 62.229 kb on - strand, within GFF3553at 62.277 kb on - strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.375 kb on + strand, within GFF3553at 62.375 kb on + strand, within GFF3553at 62.376 kb on - strand, within GFF3553at 62.376 kb on - strand, within GFF3553at 62.390 kb on + strand, within GFF3553at 62.390 kb on + strand, within GFF3553at 62.391 kb on - strand, within GFF3553at 62.480 kb on + strandat 62.480 kb on + strandat 62.480 kb on + strandat 62.480 kb on + strandat 62.481 kb on - strandat 62.481 kb on - strandat 62.695 kb on + strandat 62.695 kb on + strandat 62.695 kb on + strandat 62.696 kb on - strandat 62.696 kb on - strandat 62.696 kb on - strandat 62.696 kb on - strandat 62.696 kb on - strandat 62.696 kb on - strandat 62.893 kb on + strandat 62.893 kb on + strandat 62.893 kb on + strandat 62.893 kb on + strandat 62.893 kb on + strandat 62.894 kb on - strandat 62.894 kb on - strandat 62.894 kb on - strandat 62.894 kb on - strandat 62.894 kb on - strandat 62.894 kb on - strandat 62.894 kb on - strandat 63.193 kb on + strand, within GFF3554at 63.372 kb on - strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.530 kb on - strand, within GFF3554at 63.530 kb on - strand, within GFF3554at 63.530 kb on - strand, within GFF3554at 63.530 kb on - strand, within GFF3554at 63.587 kb on - strand, within GFF3554at 63.587 kb on - strand, within GFF3554at 63.587 kb on - strand, within GFF3554

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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59,444 + GFF3552 0.55 -1.0
59,731 + GFF3552 0.70 -0.4
59,731 + GFF3552 0.70 -0.3
59,732 - GFF3552 0.70 -1.2
59,732 - GFF3552 0.70 -1.2
59,732 - GFF3552 0.70 -0.1
59,789 - GFF3552 0.73 +0.2
60,067 + GFF3552 0.88 +0.1
60,067 + GFF3552 0.88 -0.4
60,067 + GFF3552 0.88 -0.7
60,068 - GFF3552 0.88 +0.1
60,381 - +0.1
60,381 - -0.4
60,497 + -1.2
60,497 + +0.4
60,497 + -0.3
60,497 + +1.5
60,498 - -0.2
60,498 - +0.2
60,575 + GFF3553 0.11 +0.1
60,576 - GFF3553 0.11 +0.5
60,576 - GFF3553 0.11 -1.0
60,576 - GFF3553 0.11 +0.2
60,650 + GFF3553 0.15 -0.3
60,650 + GFF3553 0.15 +0.1
60,650 + GFF3553 0.15 -0.2
60,650 + GFF3553 0.15 -0.7
60,651 - GFF3553 0.15 +0.2
60,651 - GFF3553 0.15 -0.2
60,651 - GFF3553 0.15 +0.3
60,651 - GFF3553 0.15 -0.8
60,651 - GFF3553 0.15 +1.1
60,651 - GFF3553 0.15 -1.1
60,809 + GFF3553 0.21 +0.2
60,810 - GFF3553 0.21 +0.0
60,810 - GFF3553 0.21 -3.3
61,538 + GFF3553 0.53 -0.9
61,539 - GFF3553 0.53 +0.2
61,539 - GFF3553 0.53 +0.1
61,539 - GFF3553 0.53 -0.1
61,746 - GFF3553 0.62 -0.5
61,746 - GFF3553 0.62 -0.2
61,842 - GFF3553 0.66 -0.0
62,048 + GFF3553 0.75 +0.4
62,048 + GFF3553 0.75 -0.3
62,049 - GFF3553 0.75 +0.5
62,049 - GFF3553 0.75 +0.2
62,228 + GFF3553 0.82 +0.4
62,228 + GFF3553 0.82 +0.5
62,228 + GFF3553 0.82 +1.0
62,228 + GFF3553 0.82 +0.2
62,228 + GFF3553 0.82 +0.1
62,229 - GFF3553 0.82 -0.6
62,229 - GFF3553 0.82 -0.2
62,229 - GFF3553 0.82 +0.3
62,229 - GFF3553 0.82 +1.2
62,229 - GFF3553 0.82 +0.1
62,229 - GFF3553 0.82 -0.6
62,277 - GFF3553 0.84 -0.5
62,288 + GFF3553 0.85 +0.3
62,288 + GFF3553 0.85 -0.3
62,288 + GFF3553 0.85 -1.0
62,288 + GFF3553 0.85 -0.5
62,288 + GFF3553 0.85 -0.8
62,288 + GFF3553 0.85 -0.7
62,288 + GFF3553 0.85 +0.4
62,288 + GFF3553 0.85 +1.0
62,288 + GFF3553 0.85 +0.3
62,288 + GFF3553 0.85 +0.2
62,288 + GFF3553 0.85 +1.8
62,289 - GFF3553 0.85 -0.8
62,289 - GFF3553 0.85 -0.8
62,289 - GFF3553 0.85 -0.3
62,289 - GFF3553 0.85 -0.8
62,289 - GFF3553 0.85 -0.3
62,289 - GFF3553 0.85 +0.8
62,289 - GFF3553 0.85 -0.5
62,289 - GFF3553 0.85 -0.2
62,289 - GFF3553 0.85 +0.5
62,289 - GFF3553 0.85 -0.4
62,375 + GFF3553 0.89 +0.4
62,375 + GFF3553 0.89 +0.2
62,376 - GFF3553 0.89 -0.6
62,376 - GFF3553 0.89 -0.9
62,390 + GFF3553 0.89 +0.1
62,390 + GFF3553 0.89 -0.5
62,391 - GFF3553 0.89 +0.1
62,480 + -0.2
62,480 + +0.4
62,480 + +0.2
62,480 + -0.6
62,481 - -0.7
62,481 - -0.5
62,695 + -0.5
62,695 + +0.4
62,695 + +0.4
62,696 - +0.1
62,696 - -1.4
62,696 - -0.0
62,696 - -0.6
62,696 - +0.2
62,696 - -0.1
62,893 + +0.1
62,893 + -1.6
62,893 + +0.6
62,893 + -0.2
62,893 + -0.1
62,894 - -2.3
62,894 - -0.5
62,894 - +0.2
62,894 - +2.8
62,894 - -1.2
62,894 - +0.2
62,894 - +0.1
63,193 + GFF3554 0.22 +0.3
63,372 - GFF3554 0.29 +1.4
63,529 + GFF3554 0.36 +0.0
63,529 + GFF3554 0.36 +0.0
63,529 + GFF3554 0.36 -0.4
63,529 + GFF3554 0.36 +0.9
63,529 + GFF3554 0.36 +0.3
63,529 + GFF3554 0.36 +0.2
63,529 + GFF3554 0.36 -0.1
63,530 - GFF3554 0.36 -0.5
63,530 - GFF3554 0.36 -1.0
63,530 - GFF3554 0.36 +0.2
63,530 - GFF3554 0.36 +0.8
63,587 - GFF3554 0.39 -0.3
63,587 - GFF3554 0.39 +0.2
63,587 - GFF3554 0.39 -0.4

Or see this region's nucleotide sequence