Strain Fitness in Variovorax sp. SCN45 around GFF3105

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3103 and GFF3104 are separated by 39 nucleotidesGFF3104 and GFF3105 are separated by 12 nucleotidesGFF3105 and GFF3106 are separated by 34 nucleotidesGFF3106 and GFF3107 are separated by 17 nucleotides GFF3103 - Cys-tRNA(Pro) deacylase YbaK, at 530,949 to 531,443 GFF3103 GFF3104 - no description, at 531,483 to 532,172 GFF3104 GFF3105 - Tas protein, an NADP(H)-dependent aldo-keto reductase, at 532,185 to 533,363 GFF3105 GFF3106 - Hydrolase, alpha/beta fold family, at 533,398 to 534,291 GFF3106 GFF3107 - Oxidoreductase, aldo/keto reductase family, at 534,309 to 535,319 GFF3107 Position (kb) 532 533 534Strain fitness (log2 ratio) -2 -1 0 1 2at 531.352 kb on + strand, within GFF3103at 531.352 kb on + strand, within GFF3103at 531.352 kb on + strand, within GFF3103at 531.352 kb on + strand, within GFF3103at 531.352 kb on + strand, within GFF3103at 531.352 kb on + strand, within GFF3103at 531.353 kb on - strand, within GFF3103at 531.353 kb on - strand, within GFF3103at 531.353 kb on - strand, within GFF3103at 531.353 kb on - strand, within GFF3103at 531.353 kb on - strand, within GFF3103at 531.358 kb on + strand, within GFF3103at 531.358 kb on + strand, within GFF3103at 531.358 kb on + strand, within GFF3103at 531.359 kb on - strand, within GFF3103at 531.359 kb on - strand, within GFF3103at 531.359 kb on - strand, within GFF3103at 531.422 kb on + strandat 531.422 kb on + strandat 531.422 kb on + strandat 531.422 kb on + strandat 531.422 kb on + strandat 531.422 kb on + strandat 531.423 kb on - strandat 531.423 kb on - strandat 531.423 kb on - strandat 531.423 kb on - strandat 531.423 kb on - strandat 531.423 kb on - strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.543 kb on + strandat 531.543 kb on + strandat 531.543 kb on + strandat 531.544 kb on - strandat 531.544 kb on - strandat 531.544 kb on - strandat 531.544 kb on - strandat 531.544 kb on - strandat 531.544 kb on - strandat 531.544 kb on - strandat 532.261 kb on + strandat 532.262 kb on - strandat 532.336 kb on + strand, within GFF3105at 532.336 kb on + strand, within GFF3105at 532.337 kb on - strand, within GFF3105at 532.337 kb on - strand, within GFF3105at 532.337 kb on - strand, within GFF3105at 532.396 kb on + strand, within GFF3105at 532.396 kb on + strand, within GFF3105at 532.396 kb on + strand, within GFF3105at 532.396 kb on + strand, within GFF3105at 532.397 kb on - strand, within GFF3105at 532.397 kb on - strand, within GFF3105at 532.456 kb on + strand, within GFF3105at 532.456 kb on + strand, within GFF3105at 532.456 kb on + strand, within GFF3105at 532.513 kb on + strand, within GFF3105at 532.513 kb on + strand, within GFF3105at 532.514 kb on - strand, within GFF3105at 532.514 kb on - strand, within GFF3105at 532.514 kb on - strand, within GFF3105at 532.550 kb on - strand, within GFF3105at 532.550 kb on - strand, within GFF3105at 532.550 kb on - strand, within GFF3105at 532.624 kb on + strand, within GFF3105at 532.624 kb on + strand, within GFF3105at 532.624 kb on + strand, within GFF3105at 532.624 kb on + strand, within GFF3105at 532.624 kb on + strand, within GFF3105at 532.624 kb on + strand, within GFF3105at 532.625 kb on - strand, within GFF3105at 532.625 kb on - strand, within GFF3105at 532.625 kb on - strand, within GFF3105at 532.625 kb on - strand, within GFF3105at 532.625 kb on - strand, within GFF3105at 532.811 kb on - strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.861 kb on + strand, within GFF3105at 533.062 kb on + strand, within GFF3105at 533.062 kb on + strand, within GFF3105at 533.062 kb on + strand, within GFF3105at 533.062 kb on + strand, within GFF3105at 533.063 kb on - strand, within GFF3105at 533.063 kb on - strand, within GFF3105at 533.089 kb on + strand, within GFF3105at 533.089 kb on + strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.109 kb on - strand, within GFF3105at 533.258 kb on + strandat 533.259 kb on - strandat 533.259 kb on - strandat 533.294 kb on + strandat 533.294 kb on + strandat 533.348 kb on + strandat 533.348 kb on + strandat 533.349 kb on - strandat 533.349 kb on - strandat 533.365 kb on + strandat 533.365 kb on + strandat 533.365 kb on + strandat 533.365 kb on + strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.419 kb on + strandat 533.419 kb on + strandat 533.420 kb on - strandat 533.420 kb on - strandat 533.599 kb on + strand, within GFF3106at 533.599 kb on + strand, within GFF3106at 533.599 kb on + strand, within GFF3106at 533.599 kb on + strand, within GFF3106at 533.599 kb on + strand, within GFF3106at 533.599 kb on + strand, within GFF3106at 533.599 kb on + strand, within GFF3106at 533.600 kb on - strand, within GFF3106at 533.600 kb on - strand, within GFF3106at 533.600 kb on - strand, within GFF3106at 533.600 kb on - strand, within GFF3106at 533.615 kb on - strand, within GFF3106at 533.647 kb on + strand, within GFF3106at 533.722 kb on + strand, within GFF3106at 533.722 kb on + strand, within GFF3106at 533.722 kb on + strand, within GFF3106at 533.722 kb on + strand, within GFF3106at 533.723 kb on - strand, within GFF3106at 533.723 kb on - strand, within GFF3106at 533.723 kb on - strand, within GFF3106at 533.815 kb on + strand, within GFF3106at 534.076 kb on + strand, within GFF3106at 534.151 kb on + strand, within GFF3106at 534.152 kb on - strand, within GFF3106at 534.152 kb on - strand, within GFF3106

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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531,352 + GFF3103 0.81 -1.3
531,352 + GFF3103 0.81 -0.6
531,352 + GFF3103 0.81 -0.9
531,352 + GFF3103 0.81 +1.1
531,352 + GFF3103 0.81 -0.6
531,352 + GFF3103 0.81 +1.1
531,353 - GFF3103 0.82 -1.6
531,353 - GFF3103 0.82 -0.2
531,353 - GFF3103 0.82 -0.1
531,353 - GFF3103 0.82 -0.4
531,353 - GFF3103 0.82 +2.3
531,358 + GFF3103 0.83 +0.3
531,358 + GFF3103 0.83 -0.4
531,358 + GFF3103 0.83 +0.0
531,359 - GFF3103 0.83 -0.4
531,359 - GFF3103 0.83 -1.1
531,359 - GFF3103 0.83 -1.3
531,422 + -0.4
531,422 + -0.7
531,422 + +0.1
531,422 + +1.2
531,422 + -0.6
531,422 + -0.9
531,423 - +0.5
531,423 - -0.5
531,423 - +1.7
531,423 - -0.4
531,423 - +0.5
531,423 - -0.6
531,513 + +0.1
531,513 + +0.5
531,513 + +2.0
531,513 + -0.1
531,513 + -1.3
531,513 + -1.0
531,513 + -0.2
531,513 + +1.2
531,513 + -0.0
531,514 - +0.2
531,514 - +1.0
531,514 - -0.4
531,514 - -0.9
531,514 - -0.2
531,514 - -0.1
531,514 - +0.4
531,514 - +0.1
531,543 + +1.1
531,543 + +0.4
531,543 + -0.3
531,544 - -0.3
531,544 - +1.1
531,544 - -0.3
531,544 - +0.8
531,544 - -0.4
531,544 - -0.1
531,544 - -1.0
532,261 + +1.0
532,262 - -1.0
532,336 + GFF3105 0.13 -0.0
532,336 + GFF3105 0.13 +0.4
532,337 - GFF3105 0.13 -1.2
532,337 - GFF3105 0.13 -0.8
532,337 - GFF3105 0.13 -0.6
532,396 + GFF3105 0.18 -0.0
532,396 + GFF3105 0.18 -0.0
532,396 + GFF3105 0.18 -0.6
532,396 + GFF3105 0.18 -0.8
532,397 - GFF3105 0.18 -2.6
532,397 - GFF3105 0.18 -0.3
532,456 + GFF3105 0.23 +0.0
532,456 + GFF3105 0.23 -0.1
532,456 + GFF3105 0.23 +0.0
532,513 + GFF3105 0.28 +0.0
532,513 + GFF3105 0.28 -0.1
532,514 - GFF3105 0.28 +0.4
532,514 - GFF3105 0.28 -0.7
532,514 - GFF3105 0.28 -0.1
532,550 - GFF3105 0.31 -0.9
532,550 - GFF3105 0.31 -1.0
532,550 - GFF3105 0.31 -0.5
532,624 + GFF3105 0.37 -0.4
532,624 + GFF3105 0.37 -0.8
532,624 + GFF3105 0.37 +0.3
532,624 + GFF3105 0.37 +0.4
532,624 + GFF3105 0.37 -0.7
532,624 + GFF3105 0.37 +0.1
532,625 - GFF3105 0.37 +0.1
532,625 - GFF3105 0.37 -0.4
532,625 - GFF3105 0.37 -1.1
532,625 - GFF3105 0.37 -0.7
532,625 - GFF3105 0.37 -0.5
532,811 - GFF3105 0.53 -0.8
532,813 + GFF3105 0.53 -0.1
532,813 + GFF3105 0.53 +0.2
532,813 + GFF3105 0.53 -0.1
532,813 + GFF3105 0.53 +0.3
532,813 + GFF3105 0.53 +0.1
532,813 + GFF3105 0.53 +0.2
532,813 + GFF3105 0.53 -0.1
532,813 + GFF3105 0.53 -1.0
532,813 + GFF3105 0.53 -0.2
532,813 + GFF3105 0.53 -0.4
532,813 + GFF3105 0.53 -0.4
532,813 + GFF3105 0.53 -1.5
532,813 + GFF3105 0.53 -0.6
532,813 + GFF3105 0.53 -1.3
532,813 + GFF3105 0.53 -0.3
532,813 + GFF3105 0.53 +0.4
532,813 + GFF3105 0.53 -0.2
532,814 - GFF3105 0.53 -0.2
532,814 - GFF3105 0.53 -1.3
532,814 - GFF3105 0.53 +0.1
532,814 - GFF3105 0.53 -0.6
532,814 - GFF3105 0.53 -0.4
532,814 - GFF3105 0.53 +0.3
532,814 - GFF3105 0.53 -2.0
532,814 - GFF3105 0.53 +0.1
532,814 - GFF3105 0.53 -0.6
532,814 - GFF3105 0.53 -0.2
532,814 - GFF3105 0.53 -0.6
532,814 - GFF3105 0.53 +0.1
532,814 - GFF3105 0.53 -0.5
532,814 - GFF3105 0.53 -1.5
532,814 - GFF3105 0.53 -0.6
532,814 - GFF3105 0.53 +0.3
532,814 - GFF3105 0.53 +0.9
532,814 - GFF3105 0.53 +2.7
532,861 + GFF3105 0.57 -0.5
533,062 + GFF3105 0.74 -0.7
533,062 + GFF3105 0.74 -0.2
533,062 + GFF3105 0.74 -0.2
533,062 + GFF3105 0.74 +1.0
533,063 - GFF3105 0.74 -0.1
533,063 - GFF3105 0.74 +0.5
533,089 + GFF3105 0.77 -0.8
533,089 + GFF3105 0.77 -0.3
533,090 - GFF3105 0.77 -0.1
533,090 - GFF3105 0.77 +0.5
533,090 - GFF3105 0.77 +0.1
533,090 - GFF3105 0.77 +0.7
533,090 - GFF3105 0.77 +0.0
533,090 - GFF3105 0.77 -0.3
533,090 - GFF3105 0.77 -0.6
533,090 - GFF3105 0.77 -0.5
533,090 - GFF3105 0.77 +0.4
533,090 - GFF3105 0.77 +0.4
533,090 - GFF3105 0.77 +2.3
533,090 - GFF3105 0.77 -1.1
533,090 - GFF3105 0.77 -0.8
533,090 - GFF3105 0.77 +1.0
533,109 - GFF3105 0.78 -0.5
533,258 + -0.1
533,259 - +0.2
533,259 - -0.5
533,294 + -1.1
533,294 + -0.3
533,348 + +0.4
533,348 + +1.3
533,349 - -0.6
533,349 - -0.9
533,365 + -0.4
533,365 + -0.3
533,365 + +0.1
533,365 + +0.2
533,366 - -0.6
533,366 - -0.9
533,366 - -0.2
533,366 - -0.6
533,366 - -1.0
533,366 - +0.1
533,366 - -0.2
533,366 - -0.8
533,419 + -0.8
533,419 + -0.2
533,420 - +0.3
533,420 - -0.1
533,599 + GFF3106 0.22 -0.7
533,599 + GFF3106 0.22 -0.6
533,599 + GFF3106 0.22 -0.5
533,599 + GFF3106 0.22 -0.4
533,599 + GFF3106 0.22 -0.5
533,599 + GFF3106 0.22 +0.9
533,599 + GFF3106 0.22 -2.3
533,600 - GFF3106 0.23 -0.1
533,600 - GFF3106 0.23 -0.3
533,600 - GFF3106 0.23 -1.6
533,600 - GFF3106 0.23 +1.2
533,615 - GFF3106 0.24 -0.1
533,647 + GFF3106 0.28 -0.4
533,722 + GFF3106 0.36 +0.4
533,722 + GFF3106 0.36 +0.1
533,722 + GFF3106 0.36 +1.0
533,722 + GFF3106 0.36 -0.2
533,723 - GFF3106 0.36 -0.2
533,723 - GFF3106 0.36 -0.6
533,723 - GFF3106 0.36 +0.0
533,815 + GFF3106 0.47 -1.2
534,076 + GFF3106 0.76 -0.8
534,151 + GFF3106 0.84 -0.5
534,152 - GFF3106 0.84 -0.3
534,152 - GFF3106 0.84 -0.6

Or see this region's nucleotide sequence