Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3063 and GFF3064 are separated by 137 nucleotides GFF3064 and GFF3065 are separated by 4 nucleotides GFF3065 and GFF3066 are separated by 46 nucleotides
GFF3063 - mandelate racemase/muconate lactonizing enzyme family protein, at 496,691 to 497,857
GFF3063
GFF3064 - Exodeoxyribonuclease III (EC 3.1.11.2), at 497,995 to 498,780
GFF3064
GFF3065 - hypothetical protein, at 498,785 to 499,336
GFF3065
GFF3066 - Nitrogen regulation protein NR(I), GlnG (=NtrC), at 499,383 to 500,918
GFF3066
Position (kb) 498
499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 497.856 kb on - strand at 497.856 kb on - strand at 497.892 kb on + strand at 497.892 kb on + strand at 497.893 kb on - strand at 497.893 kb on - strand at 497.942 kb on + strand at 497.942 kb on + strand at 497.943 kb on - strand at 497.943 kb on - strand at 497.943 kb on - strand at 497.943 kb on - strand at 498.002 kb on + strand at 498.002 kb on + strand at 498.002 kb on + strand at 498.002 kb on + strand at 498.002 kb on + strand at 498.003 kb on - strand at 498.003 kb on - strand at 498.006 kb on + strand at 498.006 kb on + strand at 498.006 kb on + strand at 498.007 kb on - strand at 498.007 kb on - strand at 498.007 kb on - strand at 498.007 kb on - strand at 498.007 kb on - strand at 498.007 kb on - strand at 498.358 kb on + strand, within GFF3064 at 498.359 kb on - strand, within GFF3064 at 498.359 kb on - strand, within GFF3064 at 498.610 kb on + strand, within GFF3064 at 498.610 kb on + strand, within GFF3064 at 498.611 kb on - strand, within GFF3064 at 498.611 kb on - strand, within GFF3064 at 499.043 kb on + strand, within GFF3065 at 499.043 kb on + strand, within GFF3065 at 499.043 kb on + strand, within GFF3065 at 499.043 kb on + strand, within GFF3065 at 499.044 kb on - strand, within GFF3065 at 499.044 kb on - strand, within GFF3065 at 499.044 kb on - strand, within GFF3065 at 499.052 kb on + strand, within GFF3065 at 499.053 kb on - strand, within GFF3065 at 499.053 kb on - strand, within GFF3065 at 499.067 kb on + strand, within GFF3065 at 499.067 kb on + strand, within GFF3065 at 499.067 kb on + strand, within GFF3065 at 499.067 kb on + strand, within GFF3065 at 499.068 kb on - strand, within GFF3065 at 499.068 kb on - strand, within GFF3065 at 499.068 kb on - strand, within GFF3065 at 499.094 kb on + strand, within GFF3065 at 499.094 kb on + strand, within GFF3065 at 499.095 kb on - strand, within GFF3065 at 499.095 kb on - strand, within GFF3065 at 499.259 kb on + strand, within GFF3065 at 499.259 kb on + strand, within GFF3065 at 499.259 kb on + strand, within GFF3065 at 499.259 kb on + strand, within GFF3065 at 499.259 kb on + strand, within GFF3065 at 499.260 kb on - strand, within GFF3065 at 499.260 kb on - strand, within GFF3065 at 499.260 kb on - strand, within GFF3065 at 499.260 kb on - strand, within GFF3065 at 499.260 kb on - strand, within GFF3065 at 499.335 kb on - strand at 500.128 kb on + strand, within GFF3066
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 497,856 - -0.9 497,856 - +0.9 497,892 + -0.5 497,892 + -0.0 497,893 - -1.6 497,893 - -1.0 497,942 + +0.8 497,942 + -0.3 497,943 - -0.3 497,943 - -1.2 497,943 - +0.6 497,943 - -1.6 498,002 + -0.4 498,002 + +0.2 498,002 + -0.2 498,002 + -0.5 498,002 + +0.5 498,003 - +0.1 498,003 - -0.0 498,006 + -0.9 498,006 + -0.6 498,006 + -0.9 498,007 - -0.5 498,007 - -0.2 498,007 - +0.3 498,007 - -0.1 498,007 - -0.7 498,007 - +0.0 498,358 + GFF3064 0.46 -0.5 498,359 - GFF3064 0.46 -0.4 498,359 - GFF3064 0.46 -3.0 498,610 + GFF3064 0.78 +1.1 498,610 + GFF3064 0.78 -0.2 498,611 - GFF3064 0.78 +0.3 498,611 - GFF3064 0.78 +0.1 499,043 + GFF3065 0.47 -0.6 499,043 + GFF3065 0.47 +0.7 499,043 + GFF3065 0.47 -0.3 499,043 + GFF3065 0.47 -0.8 499,044 - GFF3065 0.47 -0.1 499,044 - GFF3065 0.47 +0.9 499,044 - GFF3065 0.47 +0.7 499,052 + GFF3065 0.48 -0.1 499,053 - GFF3065 0.49 -0.7 499,053 - GFF3065 0.49 +1.4 499,067 + GFF3065 0.51 -0.7 499,067 + GFF3065 0.51 +0.7 499,067 + GFF3065 0.51 -1.3 499,067 + GFF3065 0.51 -1.1 499,068 - GFF3065 0.51 -0.7 499,068 - GFF3065 0.51 -0.3 499,068 - GFF3065 0.51 -0.4 499,094 + GFF3065 0.56 -0.7 499,094 + GFF3065 0.56 -0.7 499,095 - GFF3065 0.56 -0.3 499,095 - GFF3065 0.56 -0.1 499,259 + GFF3065 0.86 -0.3 499,259 + GFF3065 0.86 -0.4 499,259 + GFF3065 0.86 -1.0 499,259 + GFF3065 0.86 -1.6 499,259 + GFF3065 0.86 +0.9 499,260 - GFF3065 0.86 -1.0 499,260 - GFF3065 0.86 -1.4 499,260 - GFF3065 0.86 -0.6 499,260 - GFF3065 0.86 -1.0 499,260 - GFF3065 0.86 +0.1 499,335 - -0.4 500,128 + GFF3066 0.49 -0.3
Or see this region's nucleotide sequence