Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3056 and GFF3057 are separated by 110 nucleotides GFF3057 and GFF3058 are separated by 26 nucleotides GFF3058 and GFF3059 are separated by 9 nucleotides
GFF3056 - Nitrogen assimilation regulatory protein Nac, at 489,946 to 490,917
GFF3056
GFF3057 - Aspartate aminotransferase (EC 2.6.1.1), at 491,028 to 492,242
GFF3057
GFF3058 - Demethylmenaquinone methyltransferase-like protein, at 492,269 to 492,940
GFF3058
GFF3059 - Transcriptional regulator, LysR family, at 492,950 to 493,876
GFF3059
Position (kb) 491
492
493 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 490.295 kb on + strand, within GFF3056 at 490.295 kb on + strand, within GFF3056 at 490.296 kb on - strand, within GFF3056 at 490.296 kb on - strand, within GFF3056 at 490.443 kb on - strand, within GFF3056 at 490.499 kb on + strand, within GFF3056 at 490.499 kb on + strand, within GFF3056 at 490.499 kb on + strand, within GFF3056 at 490.500 kb on - strand, within GFF3056 at 490.500 kb on - strand, within GFF3056 at 490.691 kb on + strand, within GFF3056 at 490.691 kb on + strand, within GFF3056 at 490.912 kb on + strand at 490.913 kb on - strand at 490.913 kb on - strand at 490.913 kb on - strand at 490.957 kb on + strand at 490.957 kb on + strand at 490.957 kb on + strand at 490.958 kb on - strand at 490.968 kb on + strand at 490.970 kb on + strand at 490.970 kb on + strand at 490.971 kb on - strand at 490.971 kb on - strand at 490.971 kb on - strand at 490.971 kb on - strand at 491.015 kb on + strand at 491.015 kb on + strand at 491.016 kb on - strand at 491.039 kb on + strand at 491.040 kb on - strand at 491.040 kb on - strand at 491.040 kb on - strand at 491.040 kb on - strand at 491.040 kb on - strand at 491.230 kb on - strand, within GFF3057 at 491.352 kb on + strand, within GFF3057 at 491.352 kb on + strand, within GFF3057 at 491.352 kb on + strand, within GFF3057 at 491.352 kb on + strand, within GFF3057 at 491.352 kb on + strand, within GFF3057 at 491.352 kb on + strand, within GFF3057 at 491.353 kb on - strand, within GFF3057 at 491.580 kb on + strand, within GFF3057 at 491.580 kb on + strand, within GFF3057 at 491.658 kb on + strand, within GFF3057 at 491.659 kb on - strand, within GFF3057 at 491.760 kb on + strand, within GFF3057 at 491.760 kb on + strand, within GFF3057 at 492.012 kb on + strand, within GFF3057 at 492.012 kb on + strand, within GFF3057 at 492.013 kb on - strand, within GFF3057 at 492.013 kb on - strand, within GFF3057 at 492.013 kb on - strand, within GFF3057 at 492.013 kb on - strand, within GFF3057 at 492.018 kb on + strand, within GFF3057 at 492.018 kb on + strand, within GFF3057 at 492.018 kb on + strand, within GFF3057 at 492.018 kb on + strand, within GFF3057 at 492.019 kb on - strand, within GFF3057 at 492.096 kb on + strand, within GFF3057 at 492.096 kb on + strand, within GFF3057 at 492.096 kb on + strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.325 kb on - strand at 492.408 kb on - strand, within GFF3058 at 492.581 kb on + strand, within GFF3058 at 492.582 kb on - strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.669 kb on - strand, within GFF3058 at 492.669 kb on - strand, within GFF3058 at 492.699 kb on - strand, within GFF3058 at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 490,295 + GFF3056 0.36 -0.1 490,295 + GFF3056 0.36 +0.4 490,296 - GFF3056 0.36 +0.7 490,296 - GFF3056 0.36 +1.2 490,443 - GFF3056 0.51 +0.7 490,499 + GFF3056 0.57 +0.1 490,499 + GFF3056 0.57 -0.1 490,499 + GFF3056 0.57 -0.3 490,500 - GFF3056 0.57 +0.0 490,500 - GFF3056 0.57 -0.3 490,691 + GFF3056 0.77 +0.0 490,691 + GFF3056 0.77 -0.3 490,912 + +0.0 490,913 - -1.0 490,913 - -0.2 490,913 - -0.4 490,957 + +0.2 490,957 + +1.4 490,957 + -0.6 490,958 - +0.8 490,968 + -0.1 490,970 + -0.5 490,970 + -1.6 490,971 - -0.4 490,971 - -1.6 490,971 - -0.9 490,971 - +0.1 491,015 + -0.9 491,015 + +0.9 491,016 - +0.2 491,039 + -0.9 491,040 - -0.5 491,040 - -0.9 491,040 - -0.5 491,040 - -0.9 491,040 - -0.6 491,230 - GFF3057 0.17 -0.3 491,352 + GFF3057 0.27 +0.3 491,352 + GFF3057 0.27 -0.4 491,352 + GFF3057 0.27 -0.6 491,352 + GFF3057 0.27 +0.6 491,352 + GFF3057 0.27 +0.9 491,352 + GFF3057 0.27 +0.2 491,353 - GFF3057 0.27 +0.1 491,580 + GFF3057 0.45 +0.0 491,580 + GFF3057 0.45 -1.5 491,658 + GFF3057 0.52 +0.4 491,659 - GFF3057 0.52 +0.1 491,760 + GFF3057 0.60 -0.4 491,760 + GFF3057 0.60 -0.2 492,012 + GFF3057 0.81 -0.2 492,012 + GFF3057 0.81 -1.5 492,013 - GFF3057 0.81 +2.1 492,013 - GFF3057 0.81 -0.1 492,013 - GFF3057 0.81 +0.1 492,013 - GFF3057 0.81 -1.1 492,018 + GFF3057 0.81 +0.5 492,018 + GFF3057 0.81 +0.9 492,018 + GFF3057 0.81 +0.9 492,018 + GFF3057 0.81 -0.6 492,019 - GFF3057 0.82 -1.0 492,096 + GFF3057 0.88 +0.3 492,096 + GFF3057 0.88 +0.1 492,096 + GFF3057 0.88 +0.1 492,097 - GFF3057 0.88 +0.5 492,097 - GFF3057 0.88 -0.1 492,097 - GFF3057 0.88 +0.1 492,097 - GFF3057 0.88 +0.4 492,097 - GFF3057 0.88 -0.2 492,097 - GFF3057 0.88 -0.1 492,325 - +0.1 492,408 - GFF3058 0.21 +0.7 492,581 + GFF3058 0.46 -0.1 492,582 - GFF3058 0.47 +0.5 492,668 + GFF3058 0.59 -2.0 492,668 + GFF3058 0.59 -1.1 492,668 + GFF3058 0.59 +0.2 492,668 + GFF3058 0.59 -1.0 492,668 + GFF3058 0.59 -0.9 492,669 - GFF3058 0.60 -0.0 492,669 - GFF3058 0.60 +0.0 492,699 - GFF3058 0.64 -0.3 493,025 + -1.9 493,025 + -1.2 493,025 + -0.3 493,025 + +0.2 493,025 + -0.4 493,025 + +0.4 493,025 + -0.5 493,025 + -0.1 493,026 - -1.3 493,026 - +1.4 493,026 - -0.0 493,026 - +0.2 493,026 - -0.9 493,026 - -0.2 493,026 - -0.6 493,026 - +3.3
Or see this region's nucleotide sequence