Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF290 and GFF291 overlap by 1 nucleotides GFF291 and GFF292 are separated by 25 nucleotides GFF292 and GFF293 are separated by 198 nucleotides GFF293 and GFF294 are separated by 27 nucleotides
GFF290 - Cell division coordinator CpoB, at 325,065 to 325,814
GFF290
GFF291 - Tol-Pal system peptidoglycan-associated lipoprotein PAL, at 325,814 to 326,332
GFF291
GFF292 - Tol-Pal system beta propeller repeat protein TolB, at 326,358 to 327,584
GFF292
GFF293 - no description, at 327,783 to 327,926
GFF293
GFF294 - Lipid A export permease/ATP-binding protein MsbA, at 327,954 to 329,621
GFF294
Position (kb)
326
327
328 Strain fitness (log2 ratio)
-2
-1
0
1 at 325.824 kb on + strand at 325.824 kb on + strand at 325.825 kb on - strand at 325.825 kb on - strand at 325.825 kb on - strand at 325.825 kb on - strand at 325.992 kb on + strand, within GFF291 at 325.992 kb on + strand, within GFF291 at 325.992 kb on + strand, within GFF291 at 325.992 kb on + strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 325.993 kb on - strand, within GFF291 at 326.109 kb on + strand, within GFF291 at 326.109 kb on + strand, within GFF291 at 326.109 kb on + strand, within GFF291 at 326.109 kb on + strand, within GFF291 at 326.109 kb on + strand, within GFF291 at 326.109 kb on + strand, within GFF291 at 326.109 kb on + strand, within GFF291 at 326.109 kb on + strand, within GFF291 at 326.110 kb on - strand, within GFF291 at 326.110 kb on - strand, within GFF291 at 326.110 kb on - strand, within GFF291 at 326.110 kb on - strand, within GFF291 at 326.110 kb on - strand, within GFF291 at 326.110 kb on - strand, within GFF291 at 326.110 kb on - strand, within GFF291 at 326.110 kb on - strand, within GFF291 at 326.118 kb on + strand, within GFF291 at 326.127 kb on + strand, within GFF291 at 326.127 kb on + strand, within GFF291 at 326.128 kb on - strand, within GFF291 at 326.128 kb on - strand, within GFF291 at 326.128 kb on - strand, within GFF291 at 326.128 kb on - strand, within GFF291 at 326.128 kb on - strand, within GFF291 at 326.128 kb on - strand, within GFF291 at 326.128 kb on - strand, within GFF291 at 326.313 kb on + strand at 326.321 kb on - strand at 326.349 kb on + strand at 326.349 kb on + strand at 326.349 kb on + strand at 326.350 kb on - strand at 326.355 kb on + strand at 326.355 kb on + strand at 326.355 kb on + strand at 326.355 kb on + strand at 326.356 kb on - strand at 326.356 kb on - strand at 326.356 kb on - strand at 326.356 kb on - strand at 326.356 kb on - strand at 326.356 kb on - strand at 326.356 kb on - strand at 326.356 kb on - strand at 326.356 kb on - strand at 326.356 kb on - strand at 326.356 kb on - strand at 326.356 kb on - strand at 326.394 kb on + strand at 326.394 kb on + strand at 326.394 kb on + strand at 326.394 kb on + strand at 326.394 kb on + strand at 326.394 kb on + strand at 326.394 kb on + strand at 326.394 kb on + strand at 326.394 kb on + strand at 326.394 kb on + strand at 326.394 kb on + strand at 326.395 kb on - strand at 326.395 kb on - strand at 326.395 kb on - strand at 326.395 kb on - strand at 326.395 kb on - strand at 326.395 kb on - strand at 326.395 kb on - strand at 326.395 kb on - strand at 326.395 kb on - strand at 326.395 kb on - strand at 326.485 kb on + strand, within GFF292 at 326.486 kb on - strand, within GFF292 at 326.546 kb on + strand, within GFF292 at 326.614 kb on + strand, within GFF292 at 326.614 kb on + strand, within GFF292 at 326.614 kb on + strand, within GFF292 at 326.614 kb on + strand, within GFF292 at 326.614 kb on + strand, within GFF292 at 326.614 kb on + strand, within GFF292 at 326.614 kb on + strand, within GFF292 at 326.614 kb on + strand, within GFF292 at 326.614 kb on + strand, within GFF292 at 326.614 kb on + strand, within GFF292 at 326.615 kb on - strand, within GFF292 at 326.615 kb on - strand, within GFF292 at 326.615 kb on - strand, within GFF292 at 326.615 kb on - strand, within GFF292 at 326.615 kb on - strand, within GFF292 at 326.615 kb on - strand, within GFF292 at 326.615 kb on - strand, within GFF292 at 326.659 kb on + strand, within GFF292 at 326.659 kb on + strand, within GFF292 at 326.659 kb on + strand, within GFF292 at 326.659 kb on + strand, within GFF292 at 326.659 kb on + strand, within GFF292 at 326.659 kb on + strand, within GFF292 at 326.659 kb on + strand, within GFF292 at 326.659 kb on + strand, within GFF292 at 326.659 kb on + strand, within GFF292 at 326.659 kb on + strand, within GFF292 at 326.659 kb on + strand, within GFF292 at 326.660 kb on - strand, within GFF292 at 326.660 kb on - strand, within GFF292 at 326.660 kb on - strand, within GFF292 at 326.660 kb on - strand, within GFF292 at 326.660 kb on - strand, within GFF292 at 326.660 kb on - strand, within GFF292 at 326.660 kb on - strand, within GFF292 at 326.713 kb on + strand, within GFF292 at 326.713 kb on + strand, within GFF292 at 326.713 kb on + strand, within GFF292 at 326.713 kb on + strand, within GFF292 at 326.713 kb on + strand, within GFF292 at 326.713 kb on + strand, within GFF292 at 326.713 kb on + strand, within GFF292 at 326.713 kb on + strand, within GFF292 at 326.714 kb on - strand, within GFF292 at 326.714 kb on - strand, within GFF292 at 326.714 kb on - strand, within GFF292 at 326.714 kb on - strand, within GFF292 at 326.714 kb on - strand, within GFF292 at 326.749 kb on + strand, within GFF292 at 326.749 kb on + strand, within GFF292 at 326.749 kb on + strand, within GFF292 at 326.749 kb on + strand, within GFF292 at 326.749 kb on + strand, within GFF292 at 326.749 kb on + strand, within GFF292 at 326.749 kb on + strand, within GFF292 at 326.749 kb on + strand, within GFF292 at 326.749 kb on + strand, within GFF292 at 326.749 kb on + strand, within GFF292 at 326.749 kb on + strand, within GFF292 at 326.749 kb on + strand, within GFF292 at 326.750 kb on - strand, within GFF292 at 326.750 kb on - strand, within GFF292 at 326.750 kb on - strand, within GFF292 at 326.750 kb on - strand, within GFF292 at 326.750 kb on - strand, within GFF292 at 326.750 kb on - strand, within GFF292 at 326.750 kb on - strand, within GFF292 at 326.750 kb on - strand, within GFF292 at 326.977 kb on + strand, within GFF292 at 326.977 kb on + strand, within GFF292 at 326.978 kb on - strand, within GFF292 at 326.978 kb on - strand, within GFF292 at 326.978 kb on - strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.010 kb on + strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.011 kb on - strand, within GFF292 at 327.118 kb on + strand, within GFF292 at 327.142 kb on + strand, within GFF292 at 327.142 kb on + strand, within GFF292 at 327.142 kb on + strand, within GFF292 at 327.143 kb on - strand, within GFF292 at 327.190 kb on + strand, within GFF292 at 327.190 kb on + strand, within GFF292 at 327.190 kb on + strand, within GFF292 at 327.190 kb on + strand, within GFF292 at 327.190 kb on + strand, within GFF292 at 327.191 kb on - strand, within GFF292 at 327.191 kb on - strand, within GFF292 at 327.191 kb on - strand, within GFF292 at 327.191 kb on - strand, within GFF292 at 327.191 kb on - strand, within GFF292 at 327.196 kb on + strand, within GFF292 at 327.196 kb on + strand, within GFF292 at 327.196 kb on + strand, within GFF292 at 327.196 kb on + strand, within GFF292 at 327.196 kb on + strand, within GFF292 at 327.196 kb on + strand, within GFF292 at 327.197 kb on - strand, within GFF292 at 327.197 kb on - strand, within GFF292 at 327.197 kb on - strand, within GFF292 at 327.197 kb on - strand, within GFF292 at 327.247 kb on + strand, within GFF292 at 327.247 kb on + strand, within GFF292 at 327.247 kb on + strand, within GFF292 at 327.247 kb on + strand, within GFF292 at 327.247 kb on + strand, within GFF292 at 327.248 kb on - strand, within GFF292 at 327.248 kb on - strand, within GFF292 at 327.248 kb on - strand, within GFF292 at 327.248 kb on - strand, within GFF292 at 327.248 kb on - strand, within GFF292 at 327.248 kb on - strand, within GFF292 at 327.335 kb on + strand, within GFF292 at 327.423 kb on + strand, within GFF292 at 327.423 kb on + strand, within GFF292 at 327.423 kb on + strand, within GFF292 at 327.423 kb on + strand, within GFF292 at 327.627 kb on + strand at 327.627 kb on + strand at 327.627 kb on + strand at 327.627 kb on + strand at 327.627 kb on + strand at 327.628 kb on - strand at 327.628 kb on - strand at 327.628 kb on - strand at 327.628 kb on - strand at 327.731 kb on + strand at 327.731 kb on + strand at 327.731 kb on + strand at 327.731 kb on + strand at 327.731 kb on + strand at 327.731 kb on + strand at 327.731 kb on + strand at 327.731 kb on + strand at 327.732 kb on - strand at 327.732 kb on - strand at 327.732 kb on - strand at 327.732 kb on - strand at 327.767 kb on - strand at 327.784 kb on + strand at 327.785 kb on - strand at 327.785 kb on - strand at 327.785 kb on - strand at 327.823 kb on + strand, within GFF293 at 327.823 kb on + strand, within GFF293 at 327.824 kb on - strand, within GFF293 at 327.824 kb on - strand, within GFF293
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 325,824 + -0.3 325,824 + +0.3 325,825 - -0.7 325,825 - -0.2 325,825 - +0.2 325,825 - +0.8 325,992 + GFF291 0.34 -0.9 325,992 + GFF291 0.34 -2.7 325,992 + GFF291 0.34 +0.2 325,992 + GFF291 0.34 +0.0 325,993 - GFF291 0.34 -2.2 325,993 - GFF291 0.34 -1.5 325,993 - GFF291 0.34 -1.5 325,993 - GFF291 0.34 -0.2 325,993 - GFF291 0.34 +0.1 325,993 - GFF291 0.34 -2.3 325,993 - GFF291 0.34 -1.3 325,993 - GFF291 0.34 -1.2 325,993 - GFF291 0.34 -0.4 325,993 - GFF291 0.34 +0.7 325,993 - GFF291 0.34 -0.1 325,993 - GFF291 0.34 -1.6 325,993 - GFF291 0.34 -0.1 325,993 - GFF291 0.34 +0.2 326,109 + GFF291 0.57 +0.2 326,109 + GFF291 0.57 +0.8 326,109 + GFF291 0.57 +0.2 326,109 + GFF291 0.57 -0.2 326,109 + GFF291 0.57 +0.7 326,109 + GFF291 0.57 -0.7 326,109 + GFF291 0.57 -1.9 326,109 + GFF291 0.57 -1.4 326,110 - GFF291 0.57 +0.1 326,110 - GFF291 0.57 -0.9 326,110 - GFF291 0.57 +0.5 326,110 - GFF291 0.57 -0.6 326,110 - GFF291 0.57 -0.8 326,110 - GFF291 0.57 -0.8 326,110 - GFF291 0.57 -1.1 326,110 - GFF291 0.57 -0.2 326,118 + GFF291 0.59 -1.2 326,127 + GFF291 0.60 -1.3 326,127 + GFF291 0.60 -1.4 326,128 - GFF291 0.61 -0.2 326,128 - GFF291 0.61 -0.8 326,128 - GFF291 0.61 -0.2 326,128 - GFF291 0.61 -0.7 326,128 - GFF291 0.61 -0.4 326,128 - GFF291 0.61 +0.4 326,128 - GFF291 0.61 +1.1 326,313 + -1.9 326,321 - -0.9 326,349 + -0.7 326,349 + -1.8 326,349 + -0.5 326,350 - -0.6 326,355 + -1.2 326,355 + -0.8 326,355 + -1.3 326,355 + -1.2 326,356 - -0.2 326,356 - -0.6 326,356 - -0.3 326,356 - -0.9 326,356 - +0.2 326,356 - -0.3 326,356 - +0.3 326,356 - -0.1 326,356 - +0.1 326,356 - +0.1 326,356 - -0.3 326,356 - -0.6 326,394 + -0.7 326,394 + -0.6 326,394 + -1.8 326,394 + -1.5 326,394 + -1.5 326,394 + -1.5 326,394 + +0.4 326,394 + -1.0 326,394 + -0.9 326,394 + -1.1 326,394 + -1.4 326,395 - -0.4 326,395 - -0.9 326,395 - -2.6 326,395 - -1.3 326,395 - -1.1 326,395 - -1.3 326,395 - -1.0 326,395 - +0.4 326,395 - -0.8 326,395 - -0.3 326,485 + GFF292 0.10 -0.7 326,486 - GFF292 0.10 +0.4 326,546 + GFF292 0.15 +0.4 326,614 + GFF292 0.21 -0.6 326,614 + GFF292 0.21 -0.7 326,614 + GFF292 0.21 -2.0 326,614 + GFF292 0.21 -0.7 326,614 + GFF292 0.21 -0.6 326,614 + GFF292 0.21 -0.2 326,614 + GFF292 0.21 -0.5 326,614 + GFF292 0.21 -0.9 326,614 + GFF292 0.21 +0.1 326,614 + GFF292 0.21 -1.0 326,615 - GFF292 0.21 -1.6 326,615 - GFF292 0.21 -2.0 326,615 - GFF292 0.21 -1.7 326,615 - GFF292 0.21 +0.4 326,615 - GFF292 0.21 -1.2 326,615 - GFF292 0.21 -0.4 326,615 - GFF292 0.21 -1.7 326,659 + GFF292 0.25 +0.4 326,659 + GFF292 0.25 -2.3 326,659 + GFF292 0.25 -1.0 326,659 + GFF292 0.25 -0.5 326,659 + GFF292 0.25 -2.5 326,659 + GFF292 0.25 -1.7 326,659 + GFF292 0.25 -0.8 326,659 + GFF292 0.25 -0.9 326,659 + GFF292 0.25 -0.6 326,659 + GFF292 0.25 -0.2 326,659 + GFF292 0.25 -1.1 326,660 - GFF292 0.25 +0.7 326,660 - GFF292 0.25 -0.7 326,660 - GFF292 0.25 -2.5 326,660 - GFF292 0.25 +0.2 326,660 - GFF292 0.25 -2.2 326,660 - GFF292 0.25 +1.0 326,660 - GFF292 0.25 +0.2 326,713 + GFF292 0.29 -0.6 326,713 + GFF292 0.29 -1.8 326,713 + GFF292 0.29 -0.9 326,713 + GFF292 0.29 +0.1 326,713 + GFF292 0.29 -1.3 326,713 + GFF292 0.29 -0.9 326,713 + GFF292 0.29 -0.2 326,713 + GFF292 0.29 -0.6 326,714 - GFF292 0.29 -0.2 326,714 - GFF292 0.29 +1.0 326,714 - GFF292 0.29 +0.4 326,714 - GFF292 0.29 -1.1 326,714 - GFF292 0.29 +0.4 326,749 + GFF292 0.32 -1.1 326,749 + GFF292 0.32 -0.6 326,749 + GFF292 0.32 -0.9 326,749 + GFF292 0.32 -0.6 326,749 + GFF292 0.32 -0.6 326,749 + GFF292 0.32 -0.6 326,749 + GFF292 0.32 +0.1 326,749 + GFF292 0.32 -1.2 326,749 + GFF292 0.32 -1.2 326,749 + GFF292 0.32 -1.0 326,749 + GFF292 0.32 -0.3 326,749 + GFF292 0.32 -0.3 326,750 - GFF292 0.32 -1.1 326,750 - GFF292 0.32 -1.3 326,750 - GFF292 0.32 -0.8 326,750 - GFF292 0.32 -1.1 326,750 - GFF292 0.32 -0.6 326,750 - GFF292 0.32 -1.2 326,750 - GFF292 0.32 -0.2 326,750 - GFF292 0.32 -1.9 326,977 + GFF292 0.50 -0.3 326,977 + GFF292 0.50 -0.2 326,978 - GFF292 0.51 -1.8 326,978 - GFF292 0.51 -1.2 326,978 - GFF292 0.51 -1.6 327,010 + GFF292 0.53 -0.5 327,010 + GFF292 0.53 -0.1 327,010 + GFF292 0.53 -1.1 327,010 + GFF292 0.53 -1.2 327,010 + GFF292 0.53 +1.4 327,010 + GFF292 0.53 -1.6 327,010 + GFF292 0.53 -1.6 327,010 + GFF292 0.53 -1.5 327,010 + GFF292 0.53 +1.4 327,010 + GFF292 0.53 -1.2 327,010 + GFF292 0.53 -0.2 327,010 + GFF292 0.53 -0.2 327,010 + GFF292 0.53 -0.6 327,010 + GFF292 0.53 +0.4 327,011 - GFF292 0.53 +0.6 327,011 - GFF292 0.53 -0.9 327,011 - GFF292 0.53 -0.2 327,011 - GFF292 0.53 -0.9 327,011 - GFF292 0.53 +0.9 327,011 - GFF292 0.53 -2.3 327,011 - GFF292 0.53 -0.6 327,011 - GFF292 0.53 -1.2 327,011 - GFF292 0.53 +0.2 327,011 - GFF292 0.53 -1.5 327,011 - GFF292 0.53 +0.9 327,011 - GFF292 0.53 -1.4 327,011 - GFF292 0.53 -0.2 327,011 - GFF292 0.53 +0.5 327,011 - GFF292 0.53 -2.6 327,011 - GFF292 0.53 -0.8 327,011 - GFF292 0.53 +1.2 327,118 + GFF292 0.62 -0.9 327,142 + GFF292 0.64 +0.3 327,142 + GFF292 0.64 -0.1 327,142 + GFF292 0.64 -2.2 327,143 - GFF292 0.64 -0.9 327,190 + GFF292 0.68 -0.2 327,190 + GFF292 0.68 -1.5 327,190 + GFF292 0.68 -0.7 327,190 + GFF292 0.68 -0.6 327,190 + GFF292 0.68 -1.2 327,191 - GFF292 0.68 -0.8 327,191 - GFF292 0.68 -0.5 327,191 - GFF292 0.68 -1.8 327,191 - GFF292 0.68 -2.4 327,191 - GFF292 0.68 -1.3 327,196 + GFF292 0.68 -0.4 327,196 + GFF292 0.68 -0.2 327,196 + GFF292 0.68 -1.5 327,196 + GFF292 0.68 -1.7 327,196 + GFF292 0.68 -0.7 327,196 + GFF292 0.68 -0.2 327,197 - GFF292 0.68 -1.3 327,197 - GFF292 0.68 -0.9 327,197 - GFF292 0.68 -1.4 327,197 - GFF292 0.68 +0.9 327,247 + GFF292 0.72 -2.0 327,247 + GFF292 0.72 -0.9 327,247 + GFF292 0.72 -1.5 327,247 + GFF292 0.72 -0.5 327,247 + GFF292 0.72 -1.8 327,248 - GFF292 0.73 -1.4 327,248 - GFF292 0.73 -1.0 327,248 - GFF292 0.73 -0.9 327,248 - GFF292 0.73 -1.2 327,248 - GFF292 0.73 -1.4 327,248 - GFF292 0.73 -0.8 327,335 + GFF292 0.80 +0.8 327,423 + GFF292 0.87 -1.4 327,423 + GFF292 0.87 -1.4 327,423 + GFF292 0.87 -0.3 327,423 + GFF292 0.87 +0.7 327,627 + +0.0 327,627 + -0.4 327,627 + +1.0 327,627 + -0.9 327,627 + +0.2 327,628 - -1.4 327,628 - -0.3 327,628 - -0.7 327,628 - +0.3 327,731 + -0.2 327,731 + -0.1 327,731 + -0.1 327,731 + -0.3 327,731 + -0.8 327,731 + +0.1 327,731 + -0.4 327,731 + -0.2 327,732 - -0.2 327,732 - -0.1 327,732 - -0.0 327,732 - -0.6 327,767 - +0.3 327,784 + -0.0 327,785 - +0.8 327,785 - -0.5 327,785 - +1.2 327,823 + GFF293 0.28 +0.1 327,823 + GFF293 0.28 -0.3 327,824 - GFF293 0.28 -0.7 327,824 - GFF293 0.28 -0.1
Or see this region's nucleotide sequence