Strain Fitness in Variovorax sp. SCN45 around GFF292

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF290 and GFF291 overlap by 1 nucleotidesGFF291 and GFF292 are separated by 25 nucleotidesGFF292 and GFF293 are separated by 198 nucleotidesGFF293 and GFF294 are separated by 27 nucleotides GFF290 - Cell division coordinator CpoB, at 325,065 to 325,814 GFF290 GFF291 - Tol-Pal system peptidoglycan-associated lipoprotein PAL, at 325,814 to 326,332 GFF291 GFF292 - Tol-Pal system beta propeller repeat protein TolB, at 326,358 to 327,584 GFF292 GFF293 - no description, at 327,783 to 327,926 GFF293 GFF294 - Lipid A export permease/ATP-binding protein MsbA, at 327,954 to 329,621 GFF294 Position (kb) 326 327 328Strain fitness (log2 ratio) -2 -1 0 1at 325.824 kb on + strandat 325.824 kb on + strandat 325.825 kb on - strandat 325.825 kb on - strandat 325.825 kb on - strandat 325.825 kb on - strandat 325.992 kb on + strand, within GFF291at 325.992 kb on + strand, within GFF291at 325.992 kb on + strand, within GFF291at 325.992 kb on + strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 325.993 kb on - strand, within GFF291at 326.109 kb on + strand, within GFF291at 326.109 kb on + strand, within GFF291at 326.109 kb on + strand, within GFF291at 326.109 kb on + strand, within GFF291at 326.109 kb on + strand, within GFF291at 326.109 kb on + strand, within GFF291at 326.109 kb on + strand, within GFF291at 326.109 kb on + strand, within GFF291at 326.110 kb on - strand, within GFF291at 326.110 kb on - strand, within GFF291at 326.110 kb on - strand, within GFF291at 326.110 kb on - strand, within GFF291at 326.110 kb on - strand, within GFF291at 326.110 kb on - strand, within GFF291at 326.110 kb on - strand, within GFF291at 326.110 kb on - strand, within GFF291at 326.118 kb on + strand, within GFF291at 326.127 kb on + strand, within GFF291at 326.127 kb on + strand, within GFF291at 326.128 kb on - strand, within GFF291at 326.128 kb on - strand, within GFF291at 326.128 kb on - strand, within GFF291at 326.128 kb on - strand, within GFF291at 326.128 kb on - strand, within GFF291at 326.128 kb on - strand, within GFF291at 326.128 kb on - strand, within GFF291at 326.313 kb on + strandat 326.321 kb on - strandat 326.349 kb on + strandat 326.349 kb on + strandat 326.349 kb on + strandat 326.350 kb on - strandat 326.355 kb on + strandat 326.355 kb on + strandat 326.355 kb on + strandat 326.355 kb on + strandat 326.356 kb on - strandat 326.356 kb on - strandat 326.356 kb on - strandat 326.356 kb on - strandat 326.356 kb on - strandat 326.356 kb on - strandat 326.356 kb on - strandat 326.356 kb on - strandat 326.356 kb on - strandat 326.356 kb on - strandat 326.356 kb on - strandat 326.356 kb on - strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.394 kb on + strandat 326.395 kb on - strandat 326.395 kb on - strandat 326.395 kb on - strandat 326.395 kb on - strandat 326.395 kb on - strandat 326.395 kb on - strandat 326.395 kb on - strandat 326.395 kb on - strandat 326.395 kb on - strandat 326.395 kb on - strandat 326.485 kb on + strand, within GFF292at 326.486 kb on - strand, within GFF292at 326.546 kb on + strand, within GFF292at 326.614 kb on + strand, within GFF292at 326.614 kb on + strand, within GFF292at 326.614 kb on + strand, within GFF292at 326.614 kb on + strand, within GFF292at 326.614 kb on + strand, within GFF292at 326.614 kb on + strand, within GFF292at 326.614 kb on + strand, within GFF292at 326.614 kb on + strand, within GFF292at 326.614 kb on + strand, within GFF292at 326.614 kb on + strand, within GFF292at 326.615 kb on - strand, within GFF292at 326.615 kb on - strand, within GFF292at 326.615 kb on - strand, within GFF292at 326.615 kb on - strand, within GFF292at 326.615 kb on - strand, within GFF292at 326.615 kb on - strand, within GFF292at 326.615 kb on - strand, within GFF292at 326.659 kb on + strand, within GFF292at 326.659 kb on + strand, within GFF292at 326.659 kb on + strand, within GFF292at 326.659 kb on + strand, within GFF292at 326.659 kb on + strand, within GFF292at 326.659 kb on + strand, within GFF292at 326.659 kb on + strand, within GFF292at 326.659 kb on + strand, within GFF292at 326.659 kb on + strand, within GFF292at 326.659 kb on + strand, within GFF292at 326.659 kb on + strand, within GFF292at 326.660 kb on - strand, within GFF292at 326.660 kb on - strand, within GFF292at 326.660 kb on - strand, within GFF292at 326.660 kb on - strand, within GFF292at 326.660 kb on - strand, within GFF292at 326.660 kb on - strand, within GFF292at 326.660 kb on - strand, within GFF292at 326.713 kb on + strand, within GFF292at 326.713 kb on + strand, within GFF292at 326.713 kb on + strand, within GFF292at 326.713 kb on + strand, within GFF292at 326.713 kb on + strand, within GFF292at 326.713 kb on + strand, within GFF292at 326.713 kb on + strand, within GFF292at 326.713 kb on + strand, within GFF292at 326.714 kb on - strand, within GFF292at 326.714 kb on - strand, within GFF292at 326.714 kb on - strand, within GFF292at 326.714 kb on - strand, within GFF292at 326.714 kb on - strand, within GFF292at 326.749 kb on + strand, within GFF292at 326.749 kb on + strand, within GFF292at 326.749 kb on + strand, within GFF292at 326.749 kb on + strand, within GFF292at 326.749 kb on + strand, within GFF292at 326.749 kb on + strand, within GFF292at 326.749 kb on + strand, within GFF292at 326.749 kb on + strand, within GFF292at 326.749 kb on + strand, within GFF292at 326.749 kb on + strand, within GFF292at 326.749 kb on + strand, within GFF292at 326.749 kb on + strand, within GFF292at 326.750 kb on - strand, within GFF292at 326.750 kb on - strand, within GFF292at 326.750 kb on - strand, within GFF292at 326.750 kb on - strand, within GFF292at 326.750 kb on - strand, within GFF292at 326.750 kb on - strand, within GFF292at 326.750 kb on - strand, within GFF292at 326.750 kb on - strand, within GFF292at 326.977 kb on + strand, within GFF292at 326.977 kb on + strand, within GFF292at 326.978 kb on - strand, within GFF292at 326.978 kb on - strand, within GFF292at 326.978 kb on - strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.118 kb on + strand, within GFF292at 327.142 kb on + strand, within GFF292at 327.142 kb on + strand, within GFF292at 327.142 kb on + strand, within GFF292at 327.143 kb on - strand, within GFF292at 327.190 kb on + strand, within GFF292at 327.190 kb on + strand, within GFF292at 327.190 kb on + strand, within GFF292at 327.190 kb on + strand, within GFF292at 327.190 kb on + strand, within GFF292at 327.191 kb on - strand, within GFF292at 327.191 kb on - strand, within GFF292at 327.191 kb on - strand, within GFF292at 327.191 kb on - strand, within GFF292at 327.191 kb on - strand, within GFF292at 327.196 kb on + strand, within GFF292at 327.196 kb on + strand, within GFF292at 327.196 kb on + strand, within GFF292at 327.196 kb on + strand, within GFF292at 327.196 kb on + strand, within GFF292at 327.196 kb on + strand, within GFF292at 327.197 kb on - strand, within GFF292at 327.197 kb on - strand, within GFF292at 327.197 kb on - strand, within GFF292at 327.197 kb on - strand, within GFF292at 327.247 kb on + strand, within GFF292at 327.247 kb on + strand, within GFF292at 327.247 kb on + strand, within GFF292at 327.247 kb on + strand, within GFF292at 327.247 kb on + strand, within GFF292at 327.248 kb on - strand, within GFF292at 327.248 kb on - strand, within GFF292at 327.248 kb on - strand, within GFF292at 327.248 kb on - strand, within GFF292at 327.248 kb on - strand, within GFF292at 327.248 kb on - strand, within GFF292at 327.335 kb on + strand, within GFF292at 327.423 kb on + strand, within GFF292at 327.423 kb on + strand, within GFF292at 327.423 kb on + strand, within GFF292at 327.423 kb on + strand, within GFF292at 327.627 kb on + strandat 327.627 kb on + strandat 327.627 kb on + strandat 327.627 kb on + strandat 327.627 kb on + strandat 327.628 kb on - strandat 327.628 kb on - strandat 327.628 kb on - strandat 327.628 kb on - strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.732 kb on - strandat 327.732 kb on - strandat 327.732 kb on - strandat 327.732 kb on - strandat 327.767 kb on - strandat 327.784 kb on + strandat 327.785 kb on - strandat 327.785 kb on - strandat 327.785 kb on - strandat 327.823 kb on + strand, within GFF293at 327.823 kb on + strand, within GFF293at 327.824 kb on - strand, within GFF293at 327.824 kb on - strand, within GFF293

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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325,824 + -0.3
325,824 + +0.3
325,825 - -0.7
325,825 - -0.2
325,825 - +0.2
325,825 - +0.8
325,992 + GFF291 0.34 -0.9
325,992 + GFF291 0.34 -2.7
325,992 + GFF291 0.34 +0.2
325,992 + GFF291 0.34 +0.0
325,993 - GFF291 0.34 -2.2
325,993 - GFF291 0.34 -1.5
325,993 - GFF291 0.34 -1.5
325,993 - GFF291 0.34 -0.2
325,993 - GFF291 0.34 +0.1
325,993 - GFF291 0.34 -2.3
325,993 - GFF291 0.34 -1.3
325,993 - GFF291 0.34 -1.2
325,993 - GFF291 0.34 -0.4
325,993 - GFF291 0.34 +0.7
325,993 - GFF291 0.34 -0.1
325,993 - GFF291 0.34 -1.6
325,993 - GFF291 0.34 -0.1
325,993 - GFF291 0.34 +0.2
326,109 + GFF291 0.57 +0.2
326,109 + GFF291 0.57 +0.8
326,109 + GFF291 0.57 +0.2
326,109 + GFF291 0.57 -0.2
326,109 + GFF291 0.57 +0.7
326,109 + GFF291 0.57 -0.7
326,109 + GFF291 0.57 -1.9
326,109 + GFF291 0.57 -1.4
326,110 - GFF291 0.57 +0.1
326,110 - GFF291 0.57 -0.9
326,110 - GFF291 0.57 +0.5
326,110 - GFF291 0.57 -0.6
326,110 - GFF291 0.57 -0.8
326,110 - GFF291 0.57 -0.8
326,110 - GFF291 0.57 -1.1
326,110 - GFF291 0.57 -0.2
326,118 + GFF291 0.59 -1.2
326,127 + GFF291 0.60 -1.3
326,127 + GFF291 0.60 -1.4
326,128 - GFF291 0.61 -0.2
326,128 - GFF291 0.61 -0.8
326,128 - GFF291 0.61 -0.2
326,128 - GFF291 0.61 -0.7
326,128 - GFF291 0.61 -0.4
326,128 - GFF291 0.61 +0.4
326,128 - GFF291 0.61 +1.1
326,313 + -1.9
326,321 - -0.9
326,349 + -0.7
326,349 + -1.8
326,349 + -0.5
326,350 - -0.6
326,355 + -1.2
326,355 + -0.8
326,355 + -1.3
326,355 + -1.2
326,356 - -0.2
326,356 - -0.6
326,356 - -0.3
326,356 - -0.9
326,356 - +0.2
326,356 - -0.3
326,356 - +0.3
326,356 - -0.1
326,356 - +0.1
326,356 - +0.1
326,356 - -0.3
326,356 - -0.6
326,394 + -0.7
326,394 + -0.6
326,394 + -1.8
326,394 + -1.5
326,394 + -1.5
326,394 + -1.5
326,394 + +0.4
326,394 + -1.0
326,394 + -0.9
326,394 + -1.1
326,394 + -1.4
326,395 - -0.4
326,395 - -0.9
326,395 - -2.6
326,395 - -1.3
326,395 - -1.1
326,395 - -1.3
326,395 - -1.0
326,395 - +0.4
326,395 - -0.8
326,395 - -0.3
326,485 + GFF292 0.10 -0.7
326,486 - GFF292 0.10 +0.4
326,546 + GFF292 0.15 +0.4
326,614 + GFF292 0.21 -0.6
326,614 + GFF292 0.21 -0.7
326,614 + GFF292 0.21 -2.0
326,614 + GFF292 0.21 -0.7
326,614 + GFF292 0.21 -0.6
326,614 + GFF292 0.21 -0.2
326,614 + GFF292 0.21 -0.5
326,614 + GFF292 0.21 -0.9
326,614 + GFF292 0.21 +0.1
326,614 + GFF292 0.21 -1.0
326,615 - GFF292 0.21 -1.6
326,615 - GFF292 0.21 -2.0
326,615 - GFF292 0.21 -1.7
326,615 - GFF292 0.21 +0.4
326,615 - GFF292 0.21 -1.2
326,615 - GFF292 0.21 -0.4
326,615 - GFF292 0.21 -1.7
326,659 + GFF292 0.25 +0.4
326,659 + GFF292 0.25 -2.3
326,659 + GFF292 0.25 -1.0
326,659 + GFF292 0.25 -0.5
326,659 + GFF292 0.25 -2.5
326,659 + GFF292 0.25 -1.7
326,659 + GFF292 0.25 -0.8
326,659 + GFF292 0.25 -0.9
326,659 + GFF292 0.25 -0.6
326,659 + GFF292 0.25 -0.2
326,659 + GFF292 0.25 -1.1
326,660 - GFF292 0.25 +0.7
326,660 - GFF292 0.25 -0.7
326,660 - GFF292 0.25 -2.5
326,660 - GFF292 0.25 +0.2
326,660 - GFF292 0.25 -2.2
326,660 - GFF292 0.25 +1.0
326,660 - GFF292 0.25 +0.2
326,713 + GFF292 0.29 -0.6
326,713 + GFF292 0.29 -1.8
326,713 + GFF292 0.29 -0.9
326,713 + GFF292 0.29 +0.1
326,713 + GFF292 0.29 -1.3
326,713 + GFF292 0.29 -0.9
326,713 + GFF292 0.29 -0.2
326,713 + GFF292 0.29 -0.6
326,714 - GFF292 0.29 -0.2
326,714 - GFF292 0.29 +1.0
326,714 - GFF292 0.29 +0.4
326,714 - GFF292 0.29 -1.1
326,714 - GFF292 0.29 +0.4
326,749 + GFF292 0.32 -1.1
326,749 + GFF292 0.32 -0.6
326,749 + GFF292 0.32 -0.9
326,749 + GFF292 0.32 -0.6
326,749 + GFF292 0.32 -0.6
326,749 + GFF292 0.32 -0.6
326,749 + GFF292 0.32 +0.1
326,749 + GFF292 0.32 -1.2
326,749 + GFF292 0.32 -1.2
326,749 + GFF292 0.32 -1.0
326,749 + GFF292 0.32 -0.3
326,749 + GFF292 0.32 -0.3
326,750 - GFF292 0.32 -1.1
326,750 - GFF292 0.32 -1.3
326,750 - GFF292 0.32 -0.8
326,750 - GFF292 0.32 -1.1
326,750 - GFF292 0.32 -0.6
326,750 - GFF292 0.32 -1.2
326,750 - GFF292 0.32 -0.2
326,750 - GFF292 0.32 -1.9
326,977 + GFF292 0.50 -0.3
326,977 + GFF292 0.50 -0.2
326,978 - GFF292 0.51 -1.8
326,978 - GFF292 0.51 -1.2
326,978 - GFF292 0.51 -1.6
327,010 + GFF292 0.53 -0.5
327,010 + GFF292 0.53 -0.1
327,010 + GFF292 0.53 -1.1
327,010 + GFF292 0.53 -1.2
327,010 + GFF292 0.53 +1.4
327,010 + GFF292 0.53 -1.6
327,010 + GFF292 0.53 -1.6
327,010 + GFF292 0.53 -1.5
327,010 + GFF292 0.53 +1.4
327,010 + GFF292 0.53 -1.2
327,010 + GFF292 0.53 -0.2
327,010 + GFF292 0.53 -0.2
327,010 + GFF292 0.53 -0.6
327,010 + GFF292 0.53 +0.4
327,011 - GFF292 0.53 +0.6
327,011 - GFF292 0.53 -0.9
327,011 - GFF292 0.53 -0.2
327,011 - GFF292 0.53 -0.9
327,011 - GFF292 0.53 +0.9
327,011 - GFF292 0.53 -2.3
327,011 - GFF292 0.53 -0.6
327,011 - GFF292 0.53 -1.2
327,011 - GFF292 0.53 +0.2
327,011 - GFF292 0.53 -1.5
327,011 - GFF292 0.53 +0.9
327,011 - GFF292 0.53 -1.4
327,011 - GFF292 0.53 -0.2
327,011 - GFF292 0.53 +0.5
327,011 - GFF292 0.53 -2.6
327,011 - GFF292 0.53 -0.8
327,011 - GFF292 0.53 +1.2
327,118 + GFF292 0.62 -0.9
327,142 + GFF292 0.64 +0.3
327,142 + GFF292 0.64 -0.1
327,142 + GFF292 0.64 -2.2
327,143 - GFF292 0.64 -0.9
327,190 + GFF292 0.68 -0.2
327,190 + GFF292 0.68 -1.5
327,190 + GFF292 0.68 -0.7
327,190 + GFF292 0.68 -0.6
327,190 + GFF292 0.68 -1.2
327,191 - GFF292 0.68 -0.8
327,191 - GFF292 0.68 -0.5
327,191 - GFF292 0.68 -1.8
327,191 - GFF292 0.68 -2.4
327,191 - GFF292 0.68 -1.3
327,196 + GFF292 0.68 -0.4
327,196 + GFF292 0.68 -0.2
327,196 + GFF292 0.68 -1.5
327,196 + GFF292 0.68 -1.7
327,196 + GFF292 0.68 -0.7
327,196 + GFF292 0.68 -0.2
327,197 - GFF292 0.68 -1.3
327,197 - GFF292 0.68 -0.9
327,197 - GFF292 0.68 -1.4
327,197 - GFF292 0.68 +0.9
327,247 + GFF292 0.72 -2.0
327,247 + GFF292 0.72 -0.9
327,247 + GFF292 0.72 -1.5
327,247 + GFF292 0.72 -0.5
327,247 + GFF292 0.72 -1.8
327,248 - GFF292 0.73 -1.4
327,248 - GFF292 0.73 -1.0
327,248 - GFF292 0.73 -0.9
327,248 - GFF292 0.73 -1.2
327,248 - GFF292 0.73 -1.4
327,248 - GFF292 0.73 -0.8
327,335 + GFF292 0.80 +0.8
327,423 + GFF292 0.87 -1.4
327,423 + GFF292 0.87 -1.4
327,423 + GFF292 0.87 -0.3
327,423 + GFF292 0.87 +0.7
327,627 + +0.0
327,627 + -0.4
327,627 + +1.0
327,627 + -0.9
327,627 + +0.2
327,628 - -1.4
327,628 - -0.3
327,628 - -0.7
327,628 - +0.3
327,731 + -0.2
327,731 + -0.1
327,731 + -0.1
327,731 + -0.3
327,731 + -0.8
327,731 + +0.1
327,731 + -0.4
327,731 + -0.2
327,732 - -0.2
327,732 - -0.1
327,732 - -0.0
327,732 - -0.6
327,767 - +0.3
327,784 + -0.0
327,785 - +0.8
327,785 - -0.5
327,785 - +1.2
327,823 + GFF293 0.28 +0.1
327,823 + GFF293 0.28 -0.3
327,824 - GFF293 0.28 -0.7
327,824 - GFF293 0.28 -0.1

Or see this region's nucleotide sequence