Strain Fitness in Variovorax sp. SCN45 around GFF2734

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2732 and GFF2733 are separated by 19 nucleotidesGFF2733 and GFF2734 are separated by 30 nucleotidesGFF2734 and GFF2735 are separated by 60 nucleotides GFF2732 - Soluble lytic murein transglycosylase (EC 4.2.2.n1), at 167,579 to 168,481 GFF2732 GFF2733 - no description, at 168,501 to 168,959 GFF2733 GFF2734 - DNA topoisomerase IV subunit B (EC 5.99.1.3), at 168,990 to 170,987 GFF2734 GFF2735 - Transcriptional regulator, LysR family, at 171,048 to 171,935 GFF2735 Position (kb) 168 169 170 171Strain fitness (log2 ratio) -2 -1 0 1 2at 168.147 kb on + strand, within GFF2732at 168.147 kb on + strand, within GFF2732at 168.147 kb on + strand, within GFF2732at 168.147 kb on + strand, within GFF2732at 168.148 kb on - strand, within GFF2732at 168.201 kb on + strand, within GFF2732at 168.201 kb on + strand, within GFF2732at 168.202 kb on - strand, within GFF2732at 168.202 kb on - strand, within GFF2732at 168.343 kb on - strand, within GFF2732at 168.396 kb on + strandat 168.396 kb on + strandat 168.396 kb on + strandat 168.397 kb on - strandat 168.397 kb on - strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.474 kb on + strandat 168.474 kb on + strandat 168.475 kb on - strandat 168.475 kb on - strandat 168.475 kb on - strandat 168.502 kb on + strandat 168.502 kb on + strandat 168.503 kb on - strandat 168.517 kb on + strandat 168.518 kb on - strandat 168.976 kb on + strandat 168.977 kb on - strandat 169.235 kb on + strand, within GFF2734at 169.235 kb on + strand, within GFF2734at 169.236 kb on - strand, within GFF2734at 169.236 kb on - strand, within GFF2734at 169.282 kb on + strand, within GFF2734at 169.282 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.969 kb on + strand, within GFF2734at 169.969 kb on + strand, within GFF2734at 169.969 kb on + strand, within GFF2734at 169.970 kb on - strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.123 kb on - strand, within GFF2734at 170.272 kb on + strand, within GFF2734at 170.272 kb on + strand, within GFF2734at 170.273 kb on - strand, within GFF2734at 170.273 kb on - strand, within GFF2734at 170.293 kb on + strand, within GFF2734at 170.294 kb on - strand, within GFF2734at 170.294 kb on - strand, within GFF2734at 170.294 kb on - strand, within GFF2734at 170.419 kb on + strand, within GFF2734at 170.419 kb on + strand, within GFF2734at 170.626 kb on + strand, within GFF2734at 170.677 kb on + strand, within GFF2734at 170.677 kb on + strand, within GFF2734at 170.677 kb on + strand, within GFF2734at 170.678 kb on - strand, within GFF2734at 170.678 kb on - strand, within GFF2734at 170.872 kb on + strandat 170.872 kb on + strandat 170.872 kb on + strandat 170.872 kb on + strandat 170.872 kb on + strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 171.000 kb on + strandat 171.000 kb on + strandat 171.001 kb on - strandat 171.001 kb on - strandat 171.001 kb on - strandat 171.001 kb on - strandat 171.001 kb on - strandat 171.001 kb on - strandat 171.018 kb on + strandat 171.019 kb on - strandat 171.019 kb on - strandat 171.019 kb on - strandat 171.033 kb on - strandat 171.033 kb on - strandat 171.049 kb on + strandat 171.049 kb on + strandat 171.049 kb on + strandat 171.049 kb on + strandat 171.049 kb on + strandat 171.050 kb on - strandat 171.050 kb on - strandat 171.050 kb on - strandat 171.361 kb on + strand, within GFF2735at 171.367 kb on + strand, within GFF2735at 171.430 kb on + strand, within GFF2735at 171.430 kb on + strand, within GFF2735at 171.430 kb on + strand, within GFF2735at 171.431 kb on - strand, within GFF2735at 171.431 kb on - strand, within GFF2735at 171.431 kb on - strand, within GFF2735at 171.589 kb on + strand, within GFF2735at 171.589 kb on + strand, within GFF2735at 171.590 kb on - strand, within GFF2735at 171.590 kb on - strand, within GFF2735

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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168,147 + GFF2732 0.63 +1.7
168,147 + GFF2732 0.63 +0.1
168,147 + GFF2732 0.63 -0.3
168,147 + GFF2732 0.63 -0.3
168,148 - GFF2732 0.63 +0.1
168,201 + GFF2732 0.69 -0.8
168,201 + GFF2732 0.69 +0.2
168,202 - GFF2732 0.69 +1.1
168,202 - GFF2732 0.69 +0.7
168,343 - GFF2732 0.85 +0.5
168,396 + +0.4
168,396 + +0.7
168,396 + -0.2
168,397 - -0.8
168,397 - +0.4
168,402 + -0.2
168,402 + -0.1
168,402 + +1.1
168,402 + -0.3
168,402 + -0.2
168,402 + -0.1
168,402 + -1.0
168,402 + -0.6
168,403 - +0.6
168,403 - +0.7
168,403 - +2.1
168,403 - -0.4
168,403 - -0.0
168,403 - -0.5
168,403 - -0.2
168,403 - -0.5
168,403 - +0.3
168,403 - -0.3
168,474 + +0.7
168,474 + +0.0
168,475 - -0.1
168,475 - +0.1
168,475 - -0.1
168,502 + -1.9
168,502 + +0.2
168,503 - -0.1
168,517 + +0.3
168,518 - -0.1
168,976 + -0.4
168,977 - -0.4
169,235 + GFF2734 0.12 -0.4
169,235 + GFF2734 0.12 -1.3
169,236 - GFF2734 0.12 -1.5
169,236 - GFF2734 0.12 -0.3
169,282 + GFF2734 0.15 -0.9
169,282 + GFF2734 0.15 -0.6
169,351 + GFF2734 0.18 -0.6
169,351 + GFF2734 0.18 -0.7
169,351 + GFF2734 0.18 -2.0
169,351 + GFF2734 0.18 -0.3
169,351 + GFF2734 0.18 +0.1
169,351 + GFF2734 0.18 +0.1
169,351 + GFF2734 0.18 -2.1
169,351 + GFF2734 0.18 -0.9
169,352 - GFF2734 0.18 +0.4
169,352 - GFF2734 0.18 -1.6
169,352 - GFF2734 0.18 -0.6
169,352 - GFF2734 0.18 -1.6
169,352 - GFF2734 0.18 -1.5
169,352 - GFF2734 0.18 +0.1
169,352 - GFF2734 0.18 -1.9
169,352 - GFF2734 0.18 -1.3
169,969 + GFF2734 0.49 -2.0
169,969 + GFF2734 0.49 -2.1
169,969 + GFF2734 0.49 +0.1
169,970 - GFF2734 0.49 -0.3
170,122 + GFF2734 0.57 -1.5
170,122 + GFF2734 0.57 -1.3
170,122 + GFF2734 0.57 -2.0
170,122 + GFF2734 0.57 +0.3
170,122 + GFF2734 0.57 -0.3
170,122 + GFF2734 0.57 +0.1
170,122 + GFF2734 0.57 -0.5
170,122 + GFF2734 0.57 +0.7
170,122 + GFF2734 0.57 -2.1
170,123 - GFF2734 0.57 -0.4
170,272 + GFF2734 0.64 -2.2
170,272 + GFF2734 0.64 -0.6
170,273 - GFF2734 0.64 -0.5
170,273 - GFF2734 0.64 -0.6
170,293 + GFF2734 0.65 -1.5
170,294 - GFF2734 0.65 -1.2
170,294 - GFF2734 0.65 -0.1
170,294 - GFF2734 0.65 -2.4
170,419 + GFF2734 0.72 -1.0
170,419 + GFF2734 0.72 -2.1
170,626 + GFF2734 0.82 -0.2
170,677 + GFF2734 0.84 -2.6
170,677 + GFF2734 0.84 -2.2
170,677 + GFF2734 0.84 -1.8
170,678 - GFF2734 0.84 +0.7
170,678 - GFF2734 0.84 +0.1
170,872 + -1.3
170,872 + +0.1
170,872 + -0.9
170,872 + -1.3
170,872 + +0.1
170,873 - -0.6
170,873 - -0.0
170,873 - -0.6
170,873 - -0.7
170,873 - -2.5
170,873 - +0.3
170,873 - -1.6
170,873 - +0.1
170,873 - -0.8
171,000 + -0.1
171,000 + -0.9
171,001 - -0.8
171,001 - -0.9
171,001 - +0.7
171,001 - -0.9
171,001 - +0.2
171,001 - -0.8
171,018 + -0.1
171,019 - -1.6
171,019 - -0.4
171,019 - +0.1
171,033 - -0.8
171,033 - -0.3
171,049 + +1.7
171,049 + -1.8
171,049 + -0.6
171,049 + -0.5
171,049 + -0.2
171,050 - -0.6
171,050 - -0.1
171,050 - -0.1
171,361 + GFF2735 0.35 -0.0
171,367 + GFF2735 0.36 -0.4
171,430 + GFF2735 0.43 -0.7
171,430 + GFF2735 0.43 +0.3
171,430 + GFF2735 0.43 -1.4
171,431 - GFF2735 0.43 -1.3
171,431 - GFF2735 0.43 +1.1
171,431 - GFF2735 0.43 +0.1
171,589 + GFF2735 0.61 -0.1
171,589 + GFF2735 0.61 +0.7
171,590 - GFF2735 0.61 -1.1
171,590 - GFF2735 0.61 -1.0

Or see this region's nucleotide sequence