Strain Fitness in Variovorax sp. SCN45 around GFF272

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF271 and GFF272 overlap by 4 nucleotidesGFF272 and GFF273 are separated by 108 nucleotides GFF271 - 2-methylcitrate synthase (EC 2.3.3.5), at 307,217 to 308,380 GFF271 GFF272 - thioesterase superfamily protein, at 308,377 to 308,817 GFF272 GFF273 - Transcriptional regulator, Xre family, at 308,926 to 310,347 GFF273 Position (kb) 308 309Strain fitness (log2 ratio) -3 -2 -1 0 1at 307.392 kb on + strand, within GFF271at 307.392 kb on + strand, within GFF271at 307.392 kb on + strand, within GFF271at 307.392 kb on + strand, within GFF271at 307.392 kb on + strand, within GFF271at 307.393 kb on - strand, within GFF271at 307.393 kb on - strand, within GFF271at 307.393 kb on - strand, within GFF271at 307.482 kb on + strand, within GFF271at 307.557 kb on + strand, within GFF271at 307.557 kb on + strand, within GFF271at 307.558 kb on - strand, within GFF271at 307.558 kb on - strand, within GFF271at 307.558 kb on - strand, within GFF271at 307.558 kb on - strand, within GFF271at 307.558 kb on - strand, within GFF271at 307.642 kb on - strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.728 kb on + strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.729 kb on - strand, within GFF271at 307.797 kb on + strand, within GFF271at 307.798 kb on - strand, within GFF271at 307.936 kb on - strand, within GFF271at 307.936 kb on - strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 308.151 kb on + strand, within GFF271at 308.151 kb on + strand, within GFF271at 308.151 kb on + strand, within GFF271at 308.151 kb on + strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.194 kb on + strand, within GFF271at 308.257 kb on - strand, within GFF271at 308.257 kb on - strand, within GFF271at 308.414 kb on + strandat 308.415 kb on - strandat 308.415 kb on - strandat 308.723 kb on + strand, within GFF272at 308.723 kb on + strand, within GFF272at 308.822 kb on + strandat 309.025 kb on + strandat 309.025 kb on + strandat 309.025 kb on + strandat 309.025 kb on + strandat 309.026 kb on - strandat 309.026 kb on - strandat 309.026 kb on - strandat 309.026 kb on - strandat 309.026 kb on - strandat 309.730 kb on + strand, within GFF273at 309.730 kb on + strand, within GFF273at 309.730 kb on + strand, within GFF273at 309.793 kb on + strand, within GFF273at 309.794 kb on - strand, within GFF273

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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307,392 + GFF271 0.15 -0.3
307,392 + GFF271 0.15 -0.9
307,392 + GFF271 0.15 -0.7
307,392 + GFF271 0.15 +0.0
307,392 + GFF271 0.15 -0.8
307,393 - GFF271 0.15 -1.1
307,393 - GFF271 0.15 +0.4
307,393 - GFF271 0.15 -0.5
307,482 + GFF271 0.23 -0.0
307,557 + GFF271 0.29 -0.7
307,557 + GFF271 0.29 +0.5
307,558 - GFF271 0.29 -0.2
307,558 - GFF271 0.29 -0.5
307,558 - GFF271 0.29 -0.3
307,558 - GFF271 0.29 +0.0
307,558 - GFF271 0.29 +0.5
307,642 - GFF271 0.37 -0.1
307,728 + GFF271 0.44 -0.2
307,728 + GFF271 0.44 +0.3
307,728 + GFF271 0.44 +0.2
307,728 + GFF271 0.44 -0.2
307,728 + GFF271 0.44 -0.4
307,728 + GFF271 0.44 -1.9
307,728 + GFF271 0.44 -0.9
307,728 + GFF271 0.44 +0.7
307,728 + GFF271 0.44 -0.9
307,728 + GFF271 0.44 +0.2
307,729 - GFF271 0.44 -0.6
307,729 - GFF271 0.44 +0.9
307,729 - GFF271 0.44 -0.9
307,729 - GFF271 0.44 -1.1
307,729 - GFF271 0.44 +0.4
307,729 - GFF271 0.44 +0.5
307,729 - GFF271 0.44 -0.2
307,729 - GFF271 0.44 -0.3
307,729 - GFF271 0.44 -0.7
307,729 - GFF271 0.44 -0.3
307,729 - GFF271 0.44 -1.4
307,729 - GFF271 0.44 +0.1
307,729 - GFF271 0.44 -0.2
307,729 - GFF271 0.44 -1.2
307,797 + GFF271 0.50 +0.7
307,798 - GFF271 0.50 -1.0
307,936 - GFF271 0.62 -0.8
307,936 - GFF271 0.62 +0.0
307,941 + GFF271 0.62 -1.1
307,941 + GFF271 0.62 +0.9
307,941 + GFF271 0.62 +0.0
307,941 + GFF271 0.62 +0.7
307,941 + GFF271 0.62 -2.6
307,942 - GFF271 0.62 -0.7
307,942 - GFF271 0.62 +0.4
307,942 - GFF271 0.62 -2.2
307,942 - GFF271 0.62 +0.4
307,942 - GFF271 0.62 -0.2
307,942 - GFF271 0.62 +0.1
307,942 - GFF271 0.62 -1.0
308,151 + GFF271 0.80 -0.4
308,151 + GFF271 0.80 -0.6
308,151 + GFF271 0.80 +0.9
308,151 + GFF271 0.80 -2.5
308,152 - GFF271 0.80 +0.4
308,152 - GFF271 0.80 +1.1
308,152 - GFF271 0.80 +0.2
308,152 - GFF271 0.80 +0.6
308,152 - GFF271 0.80 -0.7
308,152 - GFF271 0.80 -1.2
308,194 + GFF271 0.84 +0.4
308,257 - GFF271 0.89 -1.9
308,257 - GFF271 0.89 -0.6
308,414 + -0.5
308,415 - -1.5
308,415 - -0.6
308,723 + GFF272 0.78 -1.0
308,723 + GFF272 0.78 -1.8
308,822 + -0.6
309,025 + +0.8
309,025 + -0.2
309,025 + +0.4
309,025 + +0.4
309,026 - -3.6
309,026 - -0.4
309,026 - +0.2
309,026 - -0.3
309,026 - +0.4
309,730 + GFF273 0.57 -1.8
309,730 + GFF273 0.57 -0.9
309,730 + GFF273 0.57 -1.2
309,793 + GFF273 0.61 -1.8
309,794 - GFF273 0.61 -2.9

Or see this region's nucleotide sequence