Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2626 and GFF2627 overlap by 1 nucleotides GFF2627 and GFF2628 are separated by 33 nucleotides GFF2628 and GFF2629 are separated by 68 nucleotides
GFF2626 - major facilitator superfamily MFS_1, at 39,224 to 40,417
GFF2626
GFF2627 - Chorismate synthase (EC 4.2.3.5), at 40,417 to 41,526
GFF2627
GFF2628 - hypothetical protein, at 41,560 to 41,745
GFF2628
GFF2629 - hypothetical protein, at 41,814 to 42,896
GFF2629
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 39.697 kb on - strand, within GFF2626 at 39.714 kb on + strand, within GFF2626 at 39.732 kb on + strand, within GFF2626 at 39.732 kb on + strand, within GFF2626 at 39.732 kb on + strand, within GFF2626 at 39.733 kb on - strand, within GFF2626 at 39.733 kb on - strand, within GFF2626 at 39.733 kb on - strand, within GFF2626 at 40.144 kb on - strand, within GFF2626 at 40.225 kb on - strand, within GFF2626 at 40.317 kb on + strand at 40.318 kb on - strand at 40.347 kb on + strand at 40.347 kb on + strand at 40.347 kb on + strand at 40.348 kb on - strand at 40.348 kb on - strand at 40.348 kb on - strand at 40.418 kb on + strand at 40.418 kb on + strand at 40.418 kb on + strand at 40.419 kb on - strand at 40.419 kb on - strand at 40.445 kb on - strand at 40.836 kb on - strand, within GFF2627 at 40.862 kb on + strand, within GFF2627 at 40.955 kb on + strand, within GFF2627 at 40.955 kb on + strand, within GFF2627 at 40.956 kb on - strand, within GFF2627 at 40.956 kb on - strand, within GFF2627 at 41.081 kb on + strand, within GFF2627 at 41.081 kb on + strand, within GFF2627 at 41.196 kb on - strand, within GFF2627 at 41.243 kb on + strand, within GFF2627 at 41.244 kb on - strand, within GFF2627 at 41.312 kb on + strand, within GFF2627 at 41.312 kb on + strand, within GFF2627 at 41.313 kb on - strand, within GFF2627 at 41.313 kb on - strand, within GFF2627 at 41.537 kb on - strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.786 kb on + strand at 41.786 kb on + strand at 41.787 kb on - strand at 41.787 kb on - strand at 41.816 kb on - strand at 41.816 kb on - strand at 41.816 kb on - strand at 41.816 kb on - strand at 41.816 kb on - strand at 41.816 kb on - strand at 41.816 kb on - strand at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.108 kb on + strand, within GFF2629 at 42.109 kb on - strand, within GFF2629 at 42.109 kb on - strand, within GFF2629 at 42.109 kb on - strand, within GFF2629 at 42.109 kb on - strand, within GFF2629 at 42.119 kb on + strand, within GFF2629 at 42.119 kb on + strand, within GFF2629 at 42.119 kb on + strand, within GFF2629 at 42.119 kb on + strand, within GFF2629 at 42.120 kb on - strand, within GFF2629 at 42.120 kb on - strand, within GFF2629 at 42.120 kb on - strand, within GFF2629 at 42.120 kb on - strand, within GFF2629 at 42.120 kb on - strand, within GFF2629 at 42.120 kb on - strand, within GFF2629 at 42.123 kb on + strand, within GFF2629 at 42.123 kb on + strand, within GFF2629 at 42.123 kb on + strand, within GFF2629 at 42.123 kb on + strand, within GFF2629 at 42.123 kb on + strand, within GFF2629 at 42.123 kb on + strand, within GFF2629 at 42.124 kb on - strand, within GFF2629 at 42.327 kb on + strand, within GFF2629 at 42.327 kb on + strand, within GFF2629 at 42.327 kb on + strand, within GFF2629 at 42.328 kb on - strand, within GFF2629 at 42.328 kb on - strand, within GFF2629 at 42.328 kb on - strand, within GFF2629 at 42.353 kb on + strand, within GFF2629 at 42.353 kb on + strand, within GFF2629 at 42.353 kb on + strand, within GFF2629 at 42.353 kb on + strand, within GFF2629 at 42.353 kb on + strand, within GFF2629 at 42.353 kb on + strand, within GFF2629 at 42.354 kb on - strand, within GFF2629 at 42.354 kb on - strand, within GFF2629 at 42.354 kb on - strand, within GFF2629 at 42.459 kb on + strand, within GFF2629 at 42.459 kb on + strand, within GFF2629 at 42.460 kb on - strand, within GFF2629 at 42.460 kb on - strand, within GFF2629 at 42.460 kb on - strand, within GFF2629 at 42.466 kb on - strand, within GFF2629 at 42.489 kb on + strand, within GFF2629 at 42.521 kb on - strand, within GFF2629
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 39,697 - GFF2626 0.40 -0.0 39,714 + GFF2626 0.41 +0.5 39,732 + GFF2626 0.43 +1.3 39,732 + GFF2626 0.43 -1.5 39,732 + GFF2626 0.43 -0.3 39,733 - GFF2626 0.43 -1.1 39,733 - GFF2626 0.43 -0.5 39,733 - GFF2626 0.43 -0.3 40,144 - GFF2626 0.77 +0.9 40,225 - GFF2626 0.84 -0.1 40,317 + -0.3 40,318 - -1.5 40,347 + +0.7 40,347 + -1.1 40,347 + -0.4 40,348 - -0.0 40,348 - +0.2 40,348 - +3.3 40,418 + -0.6 40,418 + +1.7 40,418 + -0.0 40,419 - -0.2 40,419 - -1.3 40,445 - -0.4 40,836 - GFF2627 0.38 -2.0 40,862 + GFF2627 0.40 -1.8 40,955 + GFF2627 0.48 -2.4 40,955 + GFF2627 0.48 -2.2 40,956 - GFF2627 0.49 -0.6 40,956 - GFF2627 0.49 -1.3 41,081 + GFF2627 0.60 -1.1 41,081 + GFF2627 0.60 -3.4 41,196 - GFF2627 0.70 +0.1 41,243 + GFF2627 0.74 +0.1 41,244 - GFF2627 0.75 -0.1 41,312 + GFF2627 0.81 +0.7 41,312 + GFF2627 0.81 -2.1 41,313 - GFF2627 0.81 -2.6 41,313 - GFF2627 0.81 -1.1 41,537 - +0.5 41,542 + -0.0 41,542 + +0.3 41,542 + -0.4 41,542 + -0.3 41,543 - +0.7 41,543 - -0.4 41,786 + +0.5 41,786 + +0.5 41,787 - -0.2 41,787 - -0.1 41,816 - +0.4 41,816 - -0.8 41,816 - -1.3 41,816 - -0.9 41,816 - -0.3 41,816 - -0.3 41,816 - -0.2 42,081 + GFF2629 0.25 -0.1 42,081 + GFF2629 0.25 -0.9 42,081 + GFF2629 0.25 -0.7 42,081 + GFF2629 0.25 -0.3 42,081 + GFF2629 0.25 +0.1 42,081 + GFF2629 0.25 -0.6 42,081 + GFF2629 0.25 -0.5 42,081 + GFF2629 0.25 +0.2 42,081 + GFF2629 0.25 +0.4 42,082 - GFF2629 0.25 -0.1 42,082 - GFF2629 0.25 -0.1 42,082 - GFF2629 0.25 +0.9 42,082 - GFF2629 0.25 -0.5 42,082 - GFF2629 0.25 +0.0 42,082 - GFF2629 0.25 -0.7 42,082 - GFF2629 0.25 -0.5 42,108 + GFF2629 0.27 +0.1 42,109 - GFF2629 0.27 -1.0 42,109 - GFF2629 0.27 -0.2 42,109 - GFF2629 0.27 -0.2 42,109 - GFF2629 0.27 -0.3 42,119 + GFF2629 0.28 -0.0 42,119 + GFF2629 0.28 -2.3 42,119 + GFF2629 0.28 +0.7 42,119 + GFF2629 0.28 -1.1 42,120 - GFF2629 0.28 +0.5 42,120 - GFF2629 0.28 +0.9 42,120 - GFF2629 0.28 -0.2 42,120 - GFF2629 0.28 -0.5 42,120 - GFF2629 0.28 -0.6 42,120 - GFF2629 0.28 +0.1 42,123 + GFF2629 0.29 -0.6 42,123 + GFF2629 0.29 +0.2 42,123 + GFF2629 0.29 -1.0 42,123 + GFF2629 0.29 +0.3 42,123 + GFF2629 0.29 +0.0 42,123 + GFF2629 0.29 -0.7 42,124 - GFF2629 0.29 +0.4 42,327 + GFF2629 0.47 -0.3 42,327 + GFF2629 0.47 -0.3 42,327 + GFF2629 0.47 +0.4 42,328 - GFF2629 0.47 +0.1 42,328 - GFF2629 0.47 -1.5 42,328 - GFF2629 0.47 +0.9 42,353 + GFF2629 0.50 -0.3 42,353 + GFF2629 0.50 -0.3 42,353 + GFF2629 0.50 -0.7 42,353 + GFF2629 0.50 -2.5 42,353 + GFF2629 0.50 -1.1 42,353 + GFF2629 0.50 -0.2 42,354 - GFF2629 0.50 -0.1 42,354 - GFF2629 0.50 -0.7 42,354 - GFF2629 0.50 -0.5 42,459 + GFF2629 0.60 -0.3 42,459 + GFF2629 0.60 -0.3 42,460 - GFF2629 0.60 +0.1 42,460 - GFF2629 0.60 -0.5 42,460 - GFF2629 0.60 -1.3 42,466 - GFF2629 0.60 -0.3 42,489 + GFF2629 0.62 -0.4 42,521 - GFF2629 0.65 +0.5
Or see this region's nucleotide sequence