Strain Fitness in Variovorax sp. SCN45 around GFF255

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF254 and GFF255 are separated by 40 nucleotidesGFF255 and GFF256 are separated by 65 nucleotides GFF254 - N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17), type 2, at 285,759 to 286,979 GFF254 GFF255 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 287,020 to 287,853 GFF255 GFF256 - Twitching motility protein PilT, at 287,919 to 289,067 GFF256 Position (kb) 287 288Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 286.137 kb on + strand, within GFF254at 286.137 kb on + strand, within GFF254at 286.138 kb on - strand, within GFF254at 286.138 kb on - strand, within GFF254at 286.138 kb on - strand, within GFF254at 286.147 kb on - strand, within GFF254at 286.147 kb on - strand, within GFF254at 286.147 kb on - strand, within GFF254at 286.147 kb on - strand, within GFF254at 286.147 kb on - strand, within GFF254at 286.147 kb on - strand, within GFF254at 286.182 kb on + strand, within GFF254at 286.182 kb on + strand, within GFF254at 286.182 kb on + strand, within GFF254at 286.183 kb on - strand, within GFF254at 286.185 kb on + strand, within GFF254at 286.185 kb on + strand, within GFF254at 286.186 kb on - strand, within GFF254at 286.186 kb on - strand, within GFF254at 286.186 kb on - strand, within GFF254at 286.186 kb on - strand, within GFF254at 286.380 kb on + strand, within GFF254at 286.380 kb on + strand, within GFF254at 286.380 kb on + strand, within GFF254at 286.381 kb on - strand, within GFF254at 286.381 kb on - strand, within GFF254at 286.381 kb on - strand, within GFF254at 286.393 kb on - strand, within GFF254at 286.393 kb on - strand, within GFF254at 286.393 kb on - strand, within GFF254at 286.393 kb on - strand, within GFF254at 286.393 kb on - strand, within GFF254at 286.393 kb on - strand, within GFF254at 286.525 kb on + strand, within GFF254at 286.526 kb on - strand, within GFF254at 286.564 kb on - strand, within GFF254at 286.572 kb on + strand, within GFF254at 286.572 kb on + strand, within GFF254at 286.572 kb on + strand, within GFF254at 286.572 kb on + strand, within GFF254at 286.573 kb on - strand, within GFF254at 286.573 kb on - strand, within GFF254at 286.573 kb on - strand, within GFF254at 286.573 kb on - strand, within GFF254at 286.662 kb on + strand, within GFF254at 286.663 kb on - strand, within GFF254at 286.663 kb on - strand, within GFF254at 286.663 kb on - strand, within GFF254at 286.737 kb on + strand, within GFF254at 286.737 kb on + strand, within GFF254at 286.737 kb on + strand, within GFF254at 286.737 kb on + strand, within GFF254at 286.738 kb on - strand, within GFF254at 286.753 kb on + strand, within GFF254at 286.800 kb on + strand, within GFF254at 286.800 kb on + strand, within GFF254at 286.800 kb on + strand, within GFF254at 286.801 kb on - strand, within GFF254at 286.801 kb on - strand, within GFF254at 286.809 kb on + strand, within GFF254at 286.809 kb on + strand, within GFF254at 286.809 kb on + strand, within GFF254at 286.809 kb on + strand, within GFF254at 286.809 kb on + strand, within GFF254at 286.809 kb on + strand, within GFF254at 286.809 kb on + strand, within GFF254at 286.809 kb on + strand, within GFF254at 286.810 kb on - strand, within GFF254at 286.810 kb on - strand, within GFF254at 286.810 kb on - strand, within GFF254at 286.810 kb on - strand, within GFF254at 286.810 kb on - strand, within GFF254at 286.810 kb on - strand, within GFF254at 286.810 kb on - strand, within GFF254at 286.810 kb on - strand, within GFF254at 286.810 kb on - strand, within GFF254at 286.836 kb on + strand, within GFF254at 286.836 kb on + strand, within GFF254at 286.836 kb on + strand, within GFF254at 286.836 kb on + strand, within GFF254at 286.837 kb on - strand, within GFF254at 286.837 kb on - strand, within GFF254at 286.837 kb on - strand, within GFF254at 286.837 kb on - strand, within GFF254at 286.837 kb on - strand, within GFF254at 287.423 kb on - strand, within GFF255at 287.644 kb on + strand, within GFF255at 287.644 kb on + strand, within GFF255at 287.644 kb on + strand, within GFF255at 287.644 kb on + strand, within GFF255at 287.644 kb on + strand, within GFF255at 287.693 kb on - strand, within GFF255at 287.767 kb on + strand, within GFF255at 287.776 kb on + strandat 287.776 kb on + strandat 287.777 kb on - strandat 287.972 kb on + strandat 287.972 kb on + strandat 287.972 kb on + strandat 287.973 kb on - strandat 287.973 kb on - strandat 287.973 kb on - strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 288.162 kb on + strand, within GFF256at 288.162 kb on + strand, within GFF256at 288.162 kb on + strand, within GFF256at 288.162 kb on + strand, within GFF256at 288.162 kb on + strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.168 kb on - strand, within GFF256at 288.168 kb on - strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.196 kb on - strand, within GFF256at 288.196 kb on - strand, within GFF256at 288.196 kb on - strand, within GFF256at 288.196 kb on - strand, within GFF256at 288.213 kb on + strand, within GFF256at 288.213 kb on + strand, within GFF256at 288.213 kb on + strand, within GFF256at 288.213 kb on + strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.357 kb on + strand, within GFF256at 288.357 kb on + strand, within GFF256at 288.409 kb on - strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.570 kb on + strand, within GFF256at 288.570 kb on + strand, within GFF256at 288.570 kb on + strand, within GFF256at 288.570 kb on + strand, within GFF256at 288.571 kb on - strand, within GFF256at 288.621 kb on + strand, within GFF256at 288.621 kb on + strand, within GFF256at 288.621 kb on + strand, within GFF256at 288.621 kb on + strand, within GFF256at 288.622 kb on - strand, within GFF256at 288.622 kb on - strand, within GFF256at 288.651 kb on + strand, within GFF256at 288.651 kb on + strand, within GFF256at 288.688 kb on + strand, within GFF256at 288.688 kb on + strand, within GFF256at 288.688 kb on + strand, within GFF256at 288.688 kb on + strand, within GFF256at 288.689 kb on - strand, within GFF256at 288.689 kb on - strand, within GFF256at 288.689 kb on - strand, within GFF256

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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286,137 + GFF254 0.31 +0.2
286,137 + GFF254 0.31 +0.8
286,138 - GFF254 0.31 -0.4
286,138 - GFF254 0.31 +0.0
286,138 - GFF254 0.31 -0.6
286,147 - GFF254 0.32 +0.4
286,147 - GFF254 0.32 +0.3
286,147 - GFF254 0.32 +0.2
286,147 - GFF254 0.32 +1.0
286,147 - GFF254 0.32 -1.8
286,147 - GFF254 0.32 -0.5
286,182 + GFF254 0.35 -0.2
286,182 + GFF254 0.35 -0.4
286,182 + GFF254 0.35 -0.7
286,183 - GFF254 0.35 -0.5
286,185 + GFF254 0.35 +0.5
286,185 + GFF254 0.35 -0.9
286,186 - GFF254 0.35 -0.4
286,186 - GFF254 0.35 +0.1
286,186 - GFF254 0.35 +0.1
286,186 - GFF254 0.35 -0.9
286,380 + GFF254 0.51 +0.4
286,380 + GFF254 0.51 +1.6
286,380 + GFF254 0.51 -0.8
286,381 - GFF254 0.51 -0.2
286,381 - GFF254 0.51 -0.6
286,381 - GFF254 0.51 -0.9
286,393 - GFF254 0.52 -0.1
286,393 - GFF254 0.52 -0.1
286,393 - GFF254 0.52 +0.1
286,393 - GFF254 0.52 -0.6
286,393 - GFF254 0.52 -0.7
286,393 - GFF254 0.52 -2.1
286,525 + GFF254 0.63 +0.2
286,526 - GFF254 0.63 -0.7
286,564 - GFF254 0.66 +1.0
286,572 + GFF254 0.67 -0.0
286,572 + GFF254 0.67 +1.4
286,572 + GFF254 0.67 +0.5
286,572 + GFF254 0.67 -1.4
286,573 - GFF254 0.67 +0.5
286,573 - GFF254 0.67 -0.3
286,573 - GFF254 0.67 -0.3
286,573 - GFF254 0.67 -0.2
286,662 + GFF254 0.74 -0.4
286,663 - GFF254 0.74 +0.0
286,663 - GFF254 0.74 +0.1
286,663 - GFF254 0.74 -0.6
286,737 + GFF254 0.80 -0.5
286,737 + GFF254 0.80 -1.8
286,737 + GFF254 0.80 -0.1
286,737 + GFF254 0.80 +0.1
286,738 - GFF254 0.80 -0.0
286,753 + GFF254 0.81 -0.2
286,800 + GFF254 0.85 +0.2
286,800 + GFF254 0.85 -1.1
286,800 + GFF254 0.85 -1.0
286,801 - GFF254 0.85 -0.8
286,801 - GFF254 0.85 +0.1
286,809 + GFF254 0.86 -0.1
286,809 + GFF254 0.86 +0.4
286,809 + GFF254 0.86 +0.8
286,809 + GFF254 0.86 +0.4
286,809 + GFF254 0.86 +0.9
286,809 + GFF254 0.86 -0.9
286,809 + GFF254 0.86 +0.2
286,809 + GFF254 0.86 -0.6
286,810 - GFF254 0.86 +1.1
286,810 - GFF254 0.86 -0.1
286,810 - GFF254 0.86 -1.2
286,810 - GFF254 0.86 +0.0
286,810 - GFF254 0.86 +0.8
286,810 - GFF254 0.86 -0.6
286,810 - GFF254 0.86 +0.8
286,810 - GFF254 0.86 -0.2
286,810 - GFF254 0.86 -0.2
286,836 + GFF254 0.88 -0.5
286,836 + GFF254 0.88 -0.0
286,836 + GFF254 0.88 -0.4
286,836 + GFF254 0.88 -0.0
286,837 - GFF254 0.88 -2.8
286,837 - GFF254 0.88 -0.9
286,837 - GFF254 0.88 -1.4
286,837 - GFF254 0.88 -0.2
286,837 - GFF254 0.88 +0.6
287,423 - GFF255 0.48 +1.4
287,644 + GFF255 0.75 -1.6
287,644 + GFF255 0.75 -1.2
287,644 + GFF255 0.75 -0.5
287,644 + GFF255 0.75 -1.6
287,644 + GFF255 0.75 -1.4
287,693 - GFF255 0.81 -1.9
287,767 + GFF255 0.90 -0.2
287,776 + +1.4
287,776 + -0.9
287,777 - -1.6
287,972 + -0.0
287,972 + +0.4
287,972 + -0.1
287,973 - -0.4
287,973 - +0.5
287,973 - -0.2
287,976 + -0.2
287,976 + +0.8
287,976 + +0.5
287,976 + -0.6
287,976 + +0.1
287,976 + -0.2
287,976 + -1.2
287,976 + -0.4
287,976 + +0.4
287,976 + +2.4
287,976 + +1.4
287,977 - -0.1
287,977 - -0.5
287,977 - +0.8
287,977 - -0.6
287,977 - -0.4
287,977 - -0.8
287,977 - +0.6
287,977 - -1.1
287,977 - -0.4
287,977 - -0.8
287,977 - -0.2
287,977 - +0.8
287,977 - -1.8
287,977 - -0.2
287,977 - -0.8
287,977 - -0.2
287,977 - -0.2
287,977 - -0.1
287,977 - -0.0
287,977 - -1.0
287,977 - -0.8
288,162 + GFF256 0.21 +3.0
288,162 + GFF256 0.21 +0.4
288,162 + GFF256 0.21 +1.2
288,162 + GFF256 0.21 -1.5
288,162 + GFF256 0.21 -0.1
288,163 - GFF256 0.21 -1.4
288,163 - GFF256 0.21 -0.3
288,163 - GFF256 0.21 +0.4
288,163 - GFF256 0.21 -0.4
288,163 - GFF256 0.21 -0.4
288,163 - GFF256 0.21 +0.2
288,163 - GFF256 0.21 -0.2
288,163 - GFF256 0.21 +0.4
288,168 - GFF256 0.22 -1.8
288,168 - GFF256 0.22 +1.0
288,195 + GFF256 0.24 -1.0
288,195 + GFF256 0.24 +0.8
288,195 + GFF256 0.24 +0.4
288,195 + GFF256 0.24 +0.9
288,195 + GFF256 0.24 +0.9
288,195 + GFF256 0.24 -0.0
288,195 + GFF256 0.24 -0.1
288,196 - GFF256 0.24 +0.7
288,196 - GFF256 0.24 -0.7
288,196 - GFF256 0.24 +0.2
288,196 - GFF256 0.24 -0.0
288,213 + GFF256 0.26 +0.0
288,213 + GFF256 0.26 -0.5
288,213 + GFF256 0.26 +0.9
288,213 + GFF256 0.26 -0.9
288,214 - GFF256 0.26 -0.2
288,214 - GFF256 0.26 -0.6
288,214 - GFF256 0.26 -1.4
288,214 - GFF256 0.26 -0.6
288,214 - GFF256 0.26 -0.7
288,357 + GFF256 0.38 +0.4
288,357 + GFF256 0.38 -0.2
288,409 - GFF256 0.43 +0.9
288,417 + GFF256 0.43 +0.7
288,417 + GFF256 0.43 -0.7
288,417 + GFF256 0.43 -0.2
288,417 + GFF256 0.43 -0.2
288,417 + GFF256 0.43 -0.1
288,418 - GFF256 0.43 -0.1
288,418 - GFF256 0.43 +0.2
288,418 - GFF256 0.43 -0.1
288,418 - GFF256 0.43 -0.1
288,418 - GFF256 0.43 +0.2
288,418 - GFF256 0.43 -0.8
288,418 - GFF256 0.43 -0.4
288,418 - GFF256 0.43 +0.1
288,418 - GFF256 0.43 -1.0
288,418 - GFF256 0.43 -0.2
288,418 - GFF256 0.43 +0.1
288,418 - GFF256 0.43 -0.0
288,570 + GFF256 0.57 -0.2
288,570 + GFF256 0.57 +0.3
288,570 + GFF256 0.57 +0.1
288,570 + GFF256 0.57 +0.0
288,571 - GFF256 0.57 +0.8
288,621 + GFF256 0.61 -0.7
288,621 + GFF256 0.61 -0.9
288,621 + GFF256 0.61 +0.6
288,621 + GFF256 0.61 -0.9
288,622 - GFF256 0.61 +0.3
288,622 - GFF256 0.61 +0.8
288,651 + GFF256 0.64 +1.4
288,651 + GFF256 0.64 -1.6
288,688 + GFF256 0.67 +0.5
288,688 + GFF256 0.67 -0.4
288,688 + GFF256 0.67 -0.1
288,688 + GFF256 0.67 -0.6
288,689 - GFF256 0.67 -0.7
288,689 - GFF256 0.67 -0.6
288,689 - GFF256 0.67 -1.3

Or see this region's nucleotide sequence