Strain Fitness in Variovorax sp. SCN45 around GFF2540

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2539 and GFF2540 overlap by 4 nucleotidesGFF2540 and GFF2541 overlap by 1 nucleotidesGFF2541 and GFF2542 are separated by 113 nucleotides GFF2539 - FAD/FMN-containing dehydrogenases, at 600,434 to 604,312 GFF2539 GFF2540 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 604,309 to 604,755 GFF2540 GFF2541 - FIG00899427: hypothetical protein, at 604,755 to 605,168 GFF2541 GFF2542 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase (EC 2.1.1.201), at 605,282 to 606,013 GFF2542 Position (kb) 604 605Strain fitness (log2 ratio) -2 -1 0 1 2at 603.464 kb on + strand, within GFF2539at 603.464 kb on + strand, within GFF2539at 603.464 kb on + strand, within GFF2539at 603.465 kb on - strand, within GFF2539at 603.465 kb on - strand, within GFF2539at 603.465 kb on - strand, within GFF2539at 603.465 kb on - strand, within GFF2539at 603.521 kb on + strand, within GFF2539at 603.521 kb on + strand, within GFF2539at 603.521 kb on + strand, within GFF2539at 603.522 kb on - strand, within GFF2539at 603.522 kb on - strand, within GFF2539at 603.522 kb on - strand, within GFF2539at 603.624 kb on - strand, within GFF2539at 603.731 kb on + strand, within GFF2539at 603.731 kb on + strand, within GFF2539at 603.731 kb on + strand, within GFF2539at 603.731 kb on + strand, within GFF2539at 603.732 kb on - strand, within GFF2539at 603.732 kb on - strand, within GFF2539at 603.732 kb on - strand, within GFF2539at 603.753 kb on + strand, within GFF2539at 603.753 kb on + strand, within GFF2539at 603.753 kb on + strand, within GFF2539at 603.753 kb on + strand, within GFF2539at 603.753 kb on + strand, within GFF2539at 603.753 kb on + strand, within GFF2539at 603.754 kb on - strand, within GFF2539at 603.754 kb on - strand, within GFF2539at 603.754 kb on - strand, within GFF2539at 603.754 kb on - strand, within GFF2539at 603.773 kb on + strand, within GFF2539at 603.773 kb on + strand, within GFF2539at 603.774 kb on - strand, within GFF2539at 603.791 kb on + strand, within GFF2539at 603.791 kb on + strand, within GFF2539at 603.791 kb on + strand, within GFF2539at 603.791 kb on + strand, within GFF2539at 603.792 kb on - strand, within GFF2539at 603.842 kb on + strand, within GFF2539at 603.843 kb on - strand, within GFF2539at 603.843 kb on - strand, within GFF2539at 603.843 kb on - strand, within GFF2539at 603.843 kb on - strand, within GFF2539at 603.843 kb on - strand, within GFF2539at 603.843 kb on - strand, within GFF2539at 603.891 kb on - strand, within GFF2539at 603.891 kb on - strand, within GFF2539at 603.896 kb on + strand, within GFF2539at 603.896 kb on + strand, within GFF2539at 603.897 kb on - strand, within GFF2539at 603.897 kb on - strand, within GFF2539at 604.211 kb on + strandat 604.211 kb on + strandat 604.211 kb on + strandat 604.211 kb on + strandat 604.211 kb on + strandat 604.211 kb on + strandat 604.212 kb on - strandat 604.212 kb on - strandat 604.212 kb on - strandat 604.212 kb on - strandat 604.212 kb on - strandat 604.265 kb on + strandat 604.265 kb on + strandat 604.265 kb on + strandat 604.265 kb on + strandat 604.265 kb on + strandat 604.265 kb on + strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.266 kb on - strandat 604.308 kb on + strandat 604.308 kb on + strandat 604.308 kb on + strandat 604.309 kb on - strandat 604.309 kb on - strandat 604.426 kb on + strand, within GFF2540at 604.426 kb on + strand, within GFF2540at 604.426 kb on + strand, within GFF2540at 604.426 kb on + strand, within GFF2540at 604.427 kb on - strand, within GFF2540at 604.427 kb on - strand, within GFF2540at 604.427 kb on - strand, within GFF2540at 604.614 kb on + strand, within GFF2540at 604.881 kb on + strand, within GFF2541at 604.881 kb on + strand, within GFF2541at 604.881 kb on + strand, within GFF2541at 604.881 kb on + strand, within GFF2541at 604.881 kb on + strand, within GFF2541at 604.881 kb on + strand, within GFF2541at 604.882 kb on - strand, within GFF2541at 604.882 kb on - strand, within GFF2541at 604.882 kb on - strand, within GFF2541at 604.882 kb on - strand, within GFF2541at 604.882 kb on - strand, within GFF2541at 604.882 kb on - strand, within GFF2541at 604.882 kb on - strand, within GFF2541at 604.882 kb on - strand, within GFF2541at 604.882 kb on - strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.983 kb on + strand, within GFF2541at 604.984 kb on - strand, within GFF2541at 604.984 kb on - strand, within GFF2541at 604.984 kb on - strand, within GFF2541at 604.984 kb on - strand, within GFF2541at 604.984 kb on - strand, within GFF2541at 604.984 kb on - strand, within GFF2541at 604.984 kb on - strand, within GFF2541at 604.984 kb on - strand, within GFF2541at 604.984 kb on - strand, within GFF2541at 605.028 kb on + strand, within GFF2541at 605.028 kb on + strand, within GFF2541at 605.028 kb on + strand, within GFF2541at 605.028 kb on + strand, within GFF2541at 605.028 kb on + strand, within GFF2541at 605.029 kb on - strand, within GFF2541at 605.029 kb on - strand, within GFF2541at 605.029 kb on - strand, within GFF2541at 605.029 kb on - strand, within GFF2541at 605.029 kb on - strand, within GFF2541at 605.029 kb on - strand, within GFF2541at 605.046 kb on + strand, within GFF2541at 605.046 kb on + strand, within GFF2541at 605.046 kb on + strand, within GFF2541at 605.047 kb on - strand, within GFF2541at 605.085 kb on + strand, within GFF2541at 605.085 kb on + strand, within GFF2541at 605.085 kb on + strand, within GFF2541at 605.085 kb on + strand, within GFF2541at 605.085 kb on + strand, within GFF2541at 605.085 kb on + strand, within GFF2541at 605.085 kb on + strand, within GFF2541at 605.085 kb on + strand, within GFF2541at 605.086 kb on - strand, within GFF2541at 605.086 kb on - strand, within GFF2541at 605.086 kb on - strand, within GFF2541at 605.185 kb on + strandat 605.185 kb on + strandat 605.186 kb on - strandat 605.186 kb on - strandat 605.269 kb on + strandat 605.270 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
603,464 + GFF2539 0.78 -0.2
603,464 + GFF2539 0.78 +0.6
603,464 + GFF2539 0.78 +0.2
603,465 - GFF2539 0.78 -0.2
603,465 - GFF2539 0.78 -0.1
603,465 - GFF2539 0.78 -0.4
603,465 - GFF2539 0.78 +0.4
603,521 + GFF2539 0.80 -1.0
603,521 + GFF2539 0.80 +0.1
603,521 + GFF2539 0.80 -0.2
603,522 - GFF2539 0.80 -0.5
603,522 - GFF2539 0.80 +2.3
603,522 - GFF2539 0.80 -0.4
603,624 - GFF2539 0.82 -0.4
603,731 + GFF2539 0.85 +0.8
603,731 + GFF2539 0.85 -0.4
603,731 + GFF2539 0.85 +1.8
603,731 + GFF2539 0.85 +0.4
603,732 - GFF2539 0.85 +0.0
603,732 - GFF2539 0.85 -0.1
603,732 - GFF2539 0.85 -0.0
603,753 + GFF2539 0.86 -1.6
603,753 + GFF2539 0.86 +0.2
603,753 + GFF2539 0.86 -0.2
603,753 + GFF2539 0.86 -1.4
603,753 + GFF2539 0.86 +1.1
603,753 + GFF2539 0.86 -0.5
603,754 - GFF2539 0.86 -0.0
603,754 - GFF2539 0.86 +0.4
603,754 - GFF2539 0.86 +0.2
603,754 - GFF2539 0.86 +0.2
603,773 + GFF2539 0.86 +0.1
603,773 + GFF2539 0.86 +0.8
603,774 - GFF2539 0.86 -0.6
603,791 + GFF2539 0.87 -0.4
603,791 + GFF2539 0.87 +0.5
603,791 + GFF2539 0.87 -0.2
603,791 + GFF2539 0.87 +1.2
603,792 - GFF2539 0.87 +0.3
603,842 + GFF2539 0.88 +0.6
603,843 - GFF2539 0.88 -0.2
603,843 - GFF2539 0.88 +0.0
603,843 - GFF2539 0.88 +2.2
603,843 - GFF2539 0.88 -1.0
603,843 - GFF2539 0.88 -0.1
603,843 - GFF2539 0.88 -0.5
603,891 - GFF2539 0.89 -0.1
603,891 - GFF2539 0.89 +0.2
603,896 + GFF2539 0.89 -0.0
603,896 + GFF2539 0.89 +0.5
603,897 - GFF2539 0.89 +0.5
603,897 - GFF2539 0.89 -0.8
604,211 + +0.4
604,211 + -1.1
604,211 + +0.3
604,211 + +0.2
604,211 + +0.2
604,211 + +1.0
604,212 - +0.7
604,212 - +0.5
604,212 - +0.6
604,212 - -0.3
604,212 - -2.0
604,265 + -1.4
604,265 + -0.9
604,265 + -1.3
604,265 + -0.2
604,265 + +0.7
604,265 + -0.6
604,266 - +1.3
604,266 - +0.9
604,266 - -0.6
604,266 - +0.4
604,266 - -0.8
604,266 - +0.9
604,266 - +0.0
604,266 - -0.3
604,266 - -0.9
604,266 - -1.2
604,266 - +0.1
604,266 - +0.5
604,266 - +0.8
604,266 - +0.2
604,266 - -1.2
604,308 + +0.5
604,308 + -0.0
604,308 + -0.2
604,309 - -0.2
604,309 - -1.0
604,426 + GFF2540 0.26 +0.6
604,426 + GFF2540 0.26 -0.7
604,426 + GFF2540 0.26 -0.7
604,426 + GFF2540 0.26 -1.1
604,427 - GFF2540 0.26 +0.2
604,427 - GFF2540 0.26 -1.7
604,427 - GFF2540 0.26 -0.5
604,614 + GFF2540 0.68 -0.3
604,881 + GFF2541 0.30 +0.5
604,881 + GFF2541 0.30 -0.9
604,881 + GFF2541 0.30 +0.2
604,881 + GFF2541 0.30 -0.7
604,881 + GFF2541 0.30 -0.1
604,881 + GFF2541 0.30 +0.8
604,882 - GFF2541 0.31 -0.9
604,882 - GFF2541 0.31 -0.2
604,882 - GFF2541 0.31 +0.4
604,882 - GFF2541 0.31 -0.2
604,882 - GFF2541 0.31 -0.7
604,882 - GFF2541 0.31 -0.7
604,882 - GFF2541 0.31 +1.2
604,882 - GFF2541 0.31 +0.8
604,882 - GFF2541 0.31 -0.0
604,983 + GFF2541 0.55 +1.4
604,983 + GFF2541 0.55 -0.2
604,983 + GFF2541 0.55 +0.6
604,983 + GFF2541 0.55 -0.0
604,983 + GFF2541 0.55 -0.6
604,983 + GFF2541 0.55 -1.4
604,983 + GFF2541 0.55 +0.1
604,983 + GFF2541 0.55 -0.3
604,983 + GFF2541 0.55 +0.1
604,983 + GFF2541 0.55 +0.1
604,983 + GFF2541 0.55 +0.5
604,983 + GFF2541 0.55 +0.5
604,983 + GFF2541 0.55 -0.7
604,983 + GFF2541 0.55 +0.0
604,983 + GFF2541 0.55 -0.4
604,983 + GFF2541 0.55 -0.2
604,983 + GFF2541 0.55 +0.3
604,983 + GFF2541 0.55 -0.4
604,984 - GFF2541 0.55 -1.2
604,984 - GFF2541 0.55 -0.4
604,984 - GFF2541 0.55 -0.8
604,984 - GFF2541 0.55 +0.6
604,984 - GFF2541 0.55 -1.3
604,984 - GFF2541 0.55 -0.2
604,984 - GFF2541 0.55 -0.5
604,984 - GFF2541 0.55 +0.2
604,984 - GFF2541 0.55 -0.3
605,028 + GFF2541 0.66 -1.0
605,028 + GFF2541 0.66 -0.2
605,028 + GFF2541 0.66 -1.1
605,028 + GFF2541 0.66 +0.5
605,028 + GFF2541 0.66 +0.0
605,029 - GFF2541 0.66 +0.3
605,029 - GFF2541 0.66 +0.6
605,029 - GFF2541 0.66 +0.7
605,029 - GFF2541 0.66 -0.6
605,029 - GFF2541 0.66 -1.3
605,029 - GFF2541 0.66 -0.4
605,046 + GFF2541 0.70 +0.4
605,046 + GFF2541 0.70 -1.0
605,046 + GFF2541 0.70 -1.0
605,047 - GFF2541 0.71 +0.1
605,085 + GFF2541 0.80 -1.1
605,085 + GFF2541 0.80 -0.2
605,085 + GFF2541 0.80 -0.6
605,085 + GFF2541 0.80 -0.2
605,085 + GFF2541 0.80 -0.1
605,085 + GFF2541 0.80 +0.4
605,085 + GFF2541 0.80 -0.1
605,085 + GFF2541 0.80 -1.4
605,086 - GFF2541 0.80 -1.0
605,086 - GFF2541 0.80 -0.2
605,086 - GFF2541 0.80 -0.4
605,185 + -0.1
605,185 + +0.1
605,186 - +0.8
605,186 - -0.8
605,269 + +0.2
605,270 - -1.4

Or see this region's nucleotide sequence