Strain Fitness in Variovorax sp. SCN45 around GFF2515

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2514 and GFF2515 are separated by 101 nucleotidesGFF2515 and GFF2516 are separated by 43 nucleotidesGFF2516 and GFF2517 overlap by 50 nucleotides GFF2514 - GTP-binding protein Obg, at 575,205 to 576,281 GFF2514 GFF2515 - Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA, at 576,383 to 577,495 GFF2515 GFF2516 - hypothetical protein, at 577,539 to 578,129 GFF2516 GFF2517 - Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase, at 578,080 to 578,745 GFF2517 Position (kb) 576 577 578Strain fitness (log2 ratio) -2 -1 0 1 2at 576.307 kb on + strandat 576.346 kb on + strandat 577.373 kb on + strand, within GFF2515at 577.373 kb on + strand, within GFF2515at 577.373 kb on + strand, within GFF2515at 577.374 kb on - strand, within GFF2515at 577.374 kb on - strand, within GFF2515at 577.374 kb on - strand, within GFF2515at 577.374 kb on - strand, within GFF2515at 577.540 kb on + strandat 577.540 kb on + strandat 577.540 kb on + strandat 577.540 kb on + strandat 577.540 kb on + strandat 577.540 kb on + strandat 577.540 kb on + strandat 577.540 kb on + strandat 577.541 kb on - strandat 577.541 kb on - strandat 577.541 kb on - strandat 577.541 kb on - strandat 577.541 kb on - strandat 577.541 kb on - strandat 577.541 kb on - strandat 577.541 kb on - strandat 577.607 kb on + strand, within GFF2516at 577.608 kb on - strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.645 kb on + strand, within GFF2516at 577.646 kb on - strand, within GFF2516at 577.646 kb on - strand, within GFF2516at 577.646 kb on - strand, within GFF2516at 577.646 kb on - strand, within GFF2516at 577.646 kb on - strand, within GFF2516at 577.646 kb on - strand, within GFF2516at 577.646 kb on - strand, within GFF2516at 577.646 kb on - strand, within GFF2516at 577.663 kb on + strand, within GFF2516at 577.663 kb on + strand, within GFF2516at 577.663 kb on + strand, within GFF2516at 577.663 kb on + strand, within GFF2516at 577.663 kb on + strand, within GFF2516at 577.663 kb on + strand, within GFF2516at 577.663 kb on + strand, within GFF2516at 577.663 kb on + strand, within GFF2516at 577.663 kb on + strand, within GFF2516at 577.663 kb on + strand, within GFF2516at 577.664 kb on - strand, within GFF2516at 577.664 kb on - strand, within GFF2516at 577.664 kb on - strand, within GFF2516at 577.664 kb on - strand, within GFF2516at 577.664 kb on - strand, within GFF2516at 577.664 kb on - strand, within GFF2516at 577.707 kb on + strand, within GFF2516at 577.714 kb on + strand, within GFF2516at 577.714 kb on + strand, within GFF2516at 577.715 kb on - strand, within GFF2516at 577.723 kb on + strand, within GFF2516at 577.723 kb on + strand, within GFF2516at 577.723 kb on + strand, within GFF2516at 577.723 kb on + strand, within GFF2516at 577.724 kb on - strand, within GFF2516at 577.724 kb on - strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.762 kb on + strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.763 kb on - strand, within GFF2516at 577.810 kb on + strand, within GFF2516at 577.810 kb on + strand, within GFF2516at 577.811 kb on - strand, within GFF2516at 577.811 kb on - strand, within GFF2516at 577.811 kb on - strand, within GFF2516at 577.811 kb on - strand, within GFF2516at 577.876 kb on + strand, within GFF2516at 577.876 kb on + strand, within GFF2516at 577.876 kb on + strand, within GFF2516at 577.876 kb on + strand, within GFF2516at 577.876 kb on + strand, within GFF2516at 577.876 kb on + strand, within GFF2516at 577.876 kb on + strand, within GFF2516at 577.876 kb on + strand, within GFF2516at 577.876 kb on + strand, within GFF2516at 577.876 kb on + strand, within GFF2516at 577.876 kb on + strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 577.877 kb on - strand, within GFF2516at 578.285 kb on + strand, within GFF2517at 578.285 kb on + strand, within GFF2517at 578.285 kb on + strand, within GFF2517at 578.285 kb on + strand, within GFF2517at 578.286 kb on - strand, within GFF2517at 578.315 kb on + strand, within GFF2517at 578.315 kb on + strand, within GFF2517at 578.315 kb on + strand, within GFF2517at 578.316 kb on - strand, within GFF2517at 578.316 kb on - strand, within GFF2517at 578.316 kb on - strand, within GFF2517at 578.316 kb on - strand, within GFF2517at 578.316 kb on - strand, within GFF2517at 578.316 kb on - strand, within GFF2517at 578.316 kb on - strand, within GFF2517at 578.360 kb on + strand, within GFF2517at 578.360 kb on + strand, within GFF2517at 578.360 kb on + strand, within GFF2517at 578.360 kb on + strand, within GFF2517at 578.361 kb on - strand, within GFF2517at 578.361 kb on - strand, within GFF2517at 578.361 kb on - strand, within GFF2517at 578.361 kb on - strand, within GFF2517at 578.447 kb on + strand, within GFF2517at 578.447 kb on + strand, within GFF2517at 578.447 kb on + strand, within GFF2517at 578.448 kb on - strand, within GFF2517at 578.448 kb on - strand, within GFF2517at 578.448 kb on - strand, within GFF2517at 578.448 kb on - strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.471 kb on + strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517at 578.472 kb on - strand, within GFF2517

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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576,307 + -0.6
576,346 + -1.2
577,373 + GFF2515 0.89 -0.1
577,373 + GFF2515 0.89 -0.8
577,373 + GFF2515 0.89 -1.1
577,374 - GFF2515 0.89 -0.7
577,374 - GFF2515 0.89 +1.8
577,374 - GFF2515 0.89 -2.2
577,374 - GFF2515 0.89 +0.8
577,540 + -0.1
577,540 + -0.1
577,540 + -1.5
577,540 + +1.0
577,540 + -0.2
577,540 + -0.2
577,540 + +0.5
577,540 + -1.9
577,541 - -0.4
577,541 - +0.7
577,541 - -0.3
577,541 - +0.1
577,541 - -0.5
577,541 - +1.0
577,541 - -0.4
577,541 - +0.2
577,607 + GFF2516 0.12 -0.8
577,608 - GFF2516 0.12 -0.3
577,645 + GFF2516 0.18 +0.6
577,645 + GFF2516 0.18 +0.7
577,645 + GFF2516 0.18 +0.0
577,645 + GFF2516 0.18 -1.2
577,645 + GFF2516 0.18 -0.8
577,645 + GFF2516 0.18 -0.1
577,645 + GFF2516 0.18 -0.1
577,645 + GFF2516 0.18 -0.5
577,645 + GFF2516 0.18 -0.3
577,645 + GFF2516 0.18 -0.2
577,645 + GFF2516 0.18 -0.0
577,645 + GFF2516 0.18 -0.7
577,645 + GFF2516 0.18 +2.1
577,646 - GFF2516 0.18 -0.1
577,646 - GFF2516 0.18 -0.1
577,646 - GFF2516 0.18 -1.8
577,646 - GFF2516 0.18 -0.4
577,646 - GFF2516 0.18 -1.3
577,646 - GFF2516 0.18 +0.2
577,646 - GFF2516 0.18 +0.1
577,646 - GFF2516 0.18 -0.1
577,663 + GFF2516 0.21 +0.5
577,663 + GFF2516 0.21 -0.6
577,663 + GFF2516 0.21 +0.0
577,663 + GFF2516 0.21 -0.3
577,663 + GFF2516 0.21 +0.8
577,663 + GFF2516 0.21 -0.1
577,663 + GFF2516 0.21 -0.8
577,663 + GFF2516 0.21 -0.1
577,663 + GFF2516 0.21 -0.4
577,663 + GFF2516 0.21 -0.7
577,664 - GFF2516 0.21 +0.2
577,664 - GFF2516 0.21 -1.0
577,664 - GFF2516 0.21 -0.2
577,664 - GFF2516 0.21 -0.6
577,664 - GFF2516 0.21 +1.0
577,664 - GFF2516 0.21 +0.5
577,707 + GFF2516 0.28 -0.5
577,714 + GFF2516 0.30 -0.8
577,714 + GFF2516 0.30 +0.4
577,715 - GFF2516 0.30 -0.3
577,723 + GFF2516 0.31 -0.8
577,723 + GFF2516 0.31 -0.7
577,723 + GFF2516 0.31 +1.2
577,723 + GFF2516 0.31 +1.5
577,724 - GFF2516 0.31 -1.0
577,724 - GFF2516 0.31 +1.4
577,762 + GFF2516 0.38 -0.6
577,762 + GFF2516 0.38 -1.0
577,762 + GFF2516 0.38 -0.9
577,762 + GFF2516 0.38 -0.2
577,762 + GFF2516 0.38 -0.1
577,762 + GFF2516 0.38 -0.3
577,762 + GFF2516 0.38 +0.2
577,762 + GFF2516 0.38 -0.4
577,762 + GFF2516 0.38 -0.9
577,762 + GFF2516 0.38 +0.2
577,762 + GFF2516 0.38 +0.9
577,762 + GFF2516 0.38 -1.7
577,762 + GFF2516 0.38 +0.0
577,762 + GFF2516 0.38 +0.2
577,762 + GFF2516 0.38 +0.3
577,762 + GFF2516 0.38 -0.5
577,762 + GFF2516 0.38 +0.8
577,762 + GFF2516 0.38 -1.0
577,762 + GFF2516 0.38 +0.6
577,763 - GFF2516 0.38 -0.8
577,763 - GFF2516 0.38 +0.2
577,763 - GFF2516 0.38 +1.0
577,763 - GFF2516 0.38 +0.3
577,763 - GFF2516 0.38 -0.1
577,763 - GFF2516 0.38 -0.1
577,763 - GFF2516 0.38 -0.0
577,763 - GFF2516 0.38 +0.3
577,763 - GFF2516 0.38 -0.0
577,763 - GFF2516 0.38 -0.2
577,763 - GFF2516 0.38 -1.2
577,763 - GFF2516 0.38 -0.1
577,763 - GFF2516 0.38 -1.0
577,763 - GFF2516 0.38 -1.2
577,763 - GFF2516 0.38 -0.2
577,763 - GFF2516 0.38 -0.1
577,763 - GFF2516 0.38 -0.3
577,763 - GFF2516 0.38 -0.6
577,810 + GFF2516 0.46 +0.2
577,810 + GFF2516 0.46 -0.4
577,811 - GFF2516 0.46 -1.0
577,811 - GFF2516 0.46 +0.7
577,811 - GFF2516 0.46 -0.8
577,811 - GFF2516 0.46 -0.1
577,876 + GFF2516 0.57 -0.1
577,876 + GFF2516 0.57 -0.0
577,876 + GFF2516 0.57 +0.2
577,876 + GFF2516 0.57 +0.0
577,876 + GFF2516 0.57 +0.1
577,876 + GFF2516 0.57 +0.7
577,876 + GFF2516 0.57 +0.5
577,876 + GFF2516 0.57 +1.2
577,876 + GFF2516 0.57 -0.3
577,876 + GFF2516 0.57 -0.0
577,876 + GFF2516 0.57 -0.2
577,877 - GFF2516 0.57 -1.1
577,877 - GFF2516 0.57 +0.8
577,877 - GFF2516 0.57 +0.2
577,877 - GFF2516 0.57 -0.5
577,877 - GFF2516 0.57 -1.5
577,877 - GFF2516 0.57 -0.2
577,877 - GFF2516 0.57 -0.0
577,877 - GFF2516 0.57 +0.1
577,877 - GFF2516 0.57 +0.2
577,877 - GFF2516 0.57 +1.2
577,877 - GFF2516 0.57 -0.7
577,877 - GFF2516 0.57 -0.2
577,877 - GFF2516 0.57 -0.3
577,877 - GFF2516 0.57 -0.6
577,877 - GFF2516 0.57 -1.0
577,877 - GFF2516 0.57 +0.3
577,877 - GFF2516 0.57 +0.0
577,877 - GFF2516 0.57 -0.3
578,285 + GFF2517 0.31 +0.8
578,285 + GFF2517 0.31 +1.0
578,285 + GFF2517 0.31 -0.9
578,285 + GFF2517 0.31 -1.5
578,286 - GFF2517 0.31 +0.2
578,315 + GFF2517 0.35 +0.0
578,315 + GFF2517 0.35 -0.6
578,315 + GFF2517 0.35 +1.5
578,316 - GFF2517 0.35 +0.1
578,316 - GFF2517 0.35 -0.3
578,316 - GFF2517 0.35 +0.8
578,316 - GFF2517 0.35 +0.3
578,316 - GFF2517 0.35 -1.2
578,316 - GFF2517 0.35 -1.8
578,316 - GFF2517 0.35 -0.6
578,360 + GFF2517 0.42 +1.0
578,360 + GFF2517 0.42 -0.2
578,360 + GFF2517 0.42 -0.0
578,360 + GFF2517 0.42 -0.6
578,361 - GFF2517 0.42 -0.8
578,361 - GFF2517 0.42 +0.0
578,361 - GFF2517 0.42 -1.1
578,361 - GFF2517 0.42 -0.5
578,447 + GFF2517 0.55 -0.3
578,447 + GFF2517 0.55 -0.3
578,447 + GFF2517 0.55 +0.6
578,448 - GFF2517 0.55 -0.7
578,448 - GFF2517 0.55 -0.3
578,448 - GFF2517 0.55 +0.4
578,448 - GFF2517 0.55 +0.5
578,471 + GFF2517 0.59 -1.2
578,471 + GFF2517 0.59 +0.8
578,471 + GFF2517 0.59 -0.7
578,471 + GFF2517 0.59 +0.9
578,471 + GFF2517 0.59 +0.5
578,471 + GFF2517 0.59 +0.8
578,471 + GFF2517 0.59 -0.3
578,471 + GFF2517 0.59 +0.8
578,471 + GFF2517 0.59 -0.6
578,471 + GFF2517 0.59 +0.2
578,471 + GFF2517 0.59 -0.1
578,471 + GFF2517 0.59 -0.6
578,471 + GFF2517 0.59 -0.3
578,471 + GFF2517 0.59 +0.4
578,471 + GFF2517 0.59 -1.5
578,471 + GFF2517 0.59 -0.2
578,471 + GFF2517 0.59 -0.5
578,471 + GFF2517 0.59 -1.0
578,471 + GFF2517 0.59 -1.5
578,472 - GFF2517 0.59 -0.7
578,472 - GFF2517 0.59 +0.6
578,472 - GFF2517 0.59 +0.8
578,472 - GFF2517 0.59 -1.7
578,472 - GFF2517 0.59 -0.8
578,472 - GFF2517 0.59 +0.7
578,472 - GFF2517 0.59 -1.3
578,472 - GFF2517 0.59 -0.7
578,472 - GFF2517 0.59 +0.7
578,472 - GFF2517 0.59 +0.4
578,472 - GFF2517 0.59 -0.3
578,472 - GFF2517 0.59 -0.2
578,472 - GFF2517 0.59 -0.3
578,472 - GFF2517 0.59 -0.9
578,472 - GFF2517 0.59 +0.2
578,472 - GFF2517 0.59 -0.3

Or see this region's nucleotide sequence