Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2341 and GFF2342 overlap by 4 nucleotides GFF2342 and GFF2343 are separated by 5 nucleotides GFF2343 and GFF2344 overlap by 4 nucleotides
GFF2341 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 392,860 to 393,690
GFF2341
GFF2342 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 393,687 to 394,676
GFF2342
GFF2343 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 394,682 to 395,557
GFF2343
GFF2344 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 395,554 to 396,504
GFF2344
Position (kb) 394
395
396 Strain fitness (log2 ratio) -2
-1
0
1 at 393.802 kb on + strand, within GFF2342 at 393.802 kb on + strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.934 kb on + strand, within GFF2342 at 393.935 kb on - strand, within GFF2342 at 393.997 kb on + strand, within GFF2342 at 393.998 kb on - strand, within GFF2342 at 394.609 kb on - strand at 394.683 kb on + strand at 394.683 kb on + strand at 394.684 kb on - strand at 394.684 kb on - strand at 395.250 kb on - strand, within GFF2343 at 395.334 kb on + strand, within GFF2343 at 395.334 kb on + strand, within GFF2343 at 395.335 kb on - strand, within GFF2343 at 395.335 kb on - strand, within GFF2343 at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.720 kb on + strand, within GFF2344 at 395.720 kb on + strand, within GFF2344 at 395.720 kb on + strand, within GFF2344 at 396.263 kb on + strand, within GFF2344 at 396.263 kb on + strand, within GFF2344 at 396.490 kb on + strand at 396.491 kb on - strand at 396.521 kb on + strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 393,802 + GFF2342 0.12 -0.5 393,802 + GFF2342 0.12 -1.5 393,803 - GFF2342 0.12 -0.6 393,803 - GFF2342 0.12 +0.8 393,803 - GFF2342 0.12 -0.6 393,803 - GFF2342 0.12 +0.8 393,803 - GFF2342 0.12 -1.1 393,934 + GFF2342 0.25 -1.3 393,935 - GFF2342 0.25 -1.2 393,997 + GFF2342 0.31 +1.1 393,998 - GFF2342 0.31 -1.4 394,609 - +0.2 394,683 + +1.4 394,683 + +1.5 394,684 - -1.1 394,684 - -1.4 395,250 - GFF2343 0.65 +0.2 395,334 + GFF2343 0.74 -0.8 395,334 + GFF2343 0.74 -1.9 395,335 - GFF2343 0.75 -1.5 395,335 - GFF2343 0.75 -1.0 395,558 - -1.2 395,558 - -0.4 395,558 - +0.6 395,558 - +0.2 395,558 - -0.1 395,558 - +0.8 395,720 + GFF2344 0.17 -0.4 395,720 + GFF2344 0.17 +0.2 395,720 + GFF2344 0.17 -2.0 396,263 + GFF2344 0.75 -1.2 396,263 + GFF2344 0.75 -1.0 396,490 + -1.1 396,491 - -1.4 396,521 + +0.3 396,522 - -0.2 396,522 - +1.4 396,522 - +0.6 396,522 - -0.5 396,522 - -1.5 396,522 - -0.3
Or see this region's nucleotide sequence