Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2229 and GFF2230 are separated by 136 nucleotides GFF2230 and GFF2231 overlap by 4 nucleotides GFF2231 and GFF2232 are separated by 34 nucleotides
GFF2229 - Pca regulon regulatory protein PcaR, at 291,162 to 291,947
GFF2229
GFF2230 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6), at 292,084 to 292,785
GFF2230
GFF2231 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6), at 292,782 to 293,429
GFF2231
GFF2232 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ 3-oxoadipyl-CoA thiolase (EC 2.3.1.174), at 293,464 to 294,669
GFF2232
Position (kb) 292
293
294 Strain fitness (log2 ratio) -1
0
1 at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.899 kb on - strand at 291.899 kb on - strand at 291.899 kb on - strand at 291.899 kb on - strand at 291.899 kb on - strand at 291.899 kb on - strand at 291.899 kb on - strand at 292.460 kb on - strand, within GFF2230 at 292.592 kb on - strand, within GFF2230 at 292.653 kb on + strand, within GFF2230 at 292.794 kb on + strand at 292.794 kb on + strand at 292.794 kb on + strand at 292.795 kb on - strand at 292.987 kb on - strand, within GFF2231 at 292.987 kb on - strand, within GFF2231 at 292.987 kb on - strand, within GFF2231 at 292.987 kb on - strand, within GFF2231 at 293.445 kb on + strand at 293.445 kb on + strand at 293.445 kb on + strand at 293.446 kb on - strand at 293.515 kb on + strand at 293.888 kb on - strand, within GFF2232 at 293.939 kb on - strand, within GFF2232 at 293.986 kb on + strand, within GFF2232
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 291,898 + +0.6 291,898 + -0.2 291,898 + -0.1 291,898 + -0.0 291,898 + +0.4 291,898 + -0.4 291,898 + -0.2 291,898 + -0.2 291,898 + -0.1 291,898 + -0.2 291,898 + -0.8 291,899 - +1.4 291,899 - -1.2 291,899 - -0.1 291,899 - -0.4 291,899 - -0.6 291,899 - +0.2 291,899 - -0.2 292,460 - GFF2230 0.54 +0.4 292,592 - GFF2230 0.72 -0.4 292,653 + GFF2230 0.81 +0.0 292,794 + -0.0 292,794 + -1.0 292,794 + +0.8 292,795 - -0.3 292,987 - GFF2231 0.32 -0.8 292,987 - GFF2231 0.32 -0.5 292,987 - GFF2231 0.32 -1.2 292,987 - GFF2231 0.32 +0.8 293,445 + +0.1 293,445 + -0.9 293,445 + +0.4 293,446 - -0.8 293,515 + +0.5 293,888 - GFF2232 0.35 -0.8 293,939 - GFF2232 0.39 -0.1 293,986 + GFF2232 0.43 +0.0
Or see this region's nucleotide sequence