Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2198 and GFF2199 are separated by 11 nucleotides GFF2199 and GFF2200 are separated by 26 nucleotides
GFF2198 - Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC, at 258,742 to 260,058
GFF2198
GFF2199 - Type I secretion outer membrane protein, TolC family, at 260,070 to 261,638
GFF2199
GFF2200 - sigma-54-dependent transcriptional regulator, at 261,665 to 263,089
GFF2200
Position (kb) 260
261
262 Strain fitness (log2 ratio) -2
-1
0
1
2 at 259.070 kb on - strand, within GFF2198 at 259.505 kb on - strand, within GFF2198 at 259.795 kb on + strand, within GFF2198 at 259.801 kb on + strand, within GFF2198 at 259.888 kb on + strand, within GFF2198 at 259.889 kb on - strand, within GFF2198 at 259.892 kb on - strand, within GFF2198 at 260.005 kb on + strand at 260.005 kb on + strand at 260.005 kb on + strand at 260.006 kb on - strand at 260.006 kb on - strand at 260.298 kb on + strand, within GFF2199 at 260.409 kb on + strand, within GFF2199 at 260.410 kb on - strand, within GFF2199 at 260.410 kb on - strand, within GFF2199 at 260.446 kb on - strand, within GFF2199 at 260.614 kb on - strand, within GFF2199 at 260.724 kb on - strand, within GFF2199 at 260.811 kb on + strand, within GFF2199 at 260.812 kb on - strand, within GFF2199 at 261.345 kb on + strand, within GFF2199 at 261.345 kb on + strand, within GFF2199 at 261.346 kb on - strand, within GFF2199 at 261.348 kb on + strand, within GFF2199 at 261.348 kb on + strand, within GFF2199 at 261.348 kb on + strand, within GFF2199 at 261.349 kb on - strand, within GFF2199 at 261.349 kb on - strand, within GFF2199 at 261.349 kb on - strand, within GFF2199 at 261.349 kb on - strand, within GFF2199 at 261.366 kb on + strand, within GFF2199 at 261.367 kb on - strand, within GFF2199 at 261.708 kb on + strand at 261.708 kb on + strand at 261.709 kb on - strand at 261.709 kb on - strand at 261.709 kb on - strand at 262.035 kb on + strand, within GFF2200 at 262.036 kb on - strand, within GFF2200 at 262.036 kb on - strand, within GFF2200 at 262.533 kb on + strand, within GFF2200 at 262.534 kb on - strand, within GFF2200 at 262.534 kb on - strand, within GFF2200
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 259,070 - GFF2198 0.25 +0.2 259,505 - GFF2198 0.58 -0.2 259,795 + GFF2198 0.80 -1.3 259,801 + GFF2198 0.80 +0.0 259,888 + GFF2198 0.87 -0.3 259,889 - GFF2198 0.87 +0.5 259,892 - GFF2198 0.87 -0.1 260,005 + +1.0 260,005 + -0.2 260,005 + -1.6 260,006 - +0.0 260,006 - +0.8 260,298 + GFF2199 0.15 +0.2 260,409 + GFF2199 0.22 -1.8 260,410 - GFF2199 0.22 -0.0 260,410 - GFF2199 0.22 -0.4 260,446 - GFF2199 0.24 -0.1 260,614 - GFF2199 0.35 -0.5 260,724 - GFF2199 0.42 +0.1 260,811 + GFF2199 0.47 +0.7 260,812 - GFF2199 0.47 +0.2 261,345 + GFF2199 0.81 -0.0 261,345 + GFF2199 0.81 +1.8 261,346 - GFF2199 0.81 +0.0 261,348 + GFF2199 0.81 -0.5 261,348 + GFF2199 0.81 -1.5 261,348 + GFF2199 0.81 +0.7 261,349 - GFF2199 0.82 +0.1 261,349 - GFF2199 0.82 +0.2 261,349 - GFF2199 0.82 -0.5 261,349 - GFF2199 0.82 -0.1 261,366 + GFF2199 0.83 +1.8 261,367 - GFF2199 0.83 +0.2 261,708 + -1.2 261,708 + -0.2 261,709 - -0.5 261,709 - -0.9 261,709 - -1.6 262,035 + GFF2200 0.26 -0.2 262,036 - GFF2200 0.26 -0.1 262,036 - GFF2200 0.26 +0.2 262,533 + GFF2200 0.61 -0.8 262,534 - GFF2200 0.61 -0.2 262,534 - GFF2200 0.61 -0.5
Or see this region's nucleotide sequence