Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2191 and GFF2192 are separated by 0 nucleotides GFF2192 and GFF2193 are separated by 300 nucleotides
GFF2191 - Pca operon transcriptional activator PcaQ, at 246,863 to 247,864
GFF2191
GFF2192 - FIG00932626: hypothetical protein, at 247,865 to 248,299
GFF2192
GFF2193 - PE_PGRS, at 248,600 to 252,736
GFF2193
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 247.500 kb on - strand, within GFF2191 at 247.500 kb on - strand, within GFF2191 at 247.500 kb on - strand, within GFF2191 at 247.500 kb on - strand, within GFF2191 at 247.902 kb on + strand at 247.903 kb on - strand at 247.903 kb on - strand at 247.903 kb on - strand at 247.903 kb on - strand at 248.127 kb on + strand, within GFF2192 at 248.127 kb on + strand, within GFF2192 at 248.128 kb on - strand, within GFF2192 at 248.172 kb on + strand, within GFF2192 at 248.250 kb on + strand, within GFF2192 at 248.251 kb on - strand, within GFF2192 at 248.251 kb on - strand, within GFF2192 at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.322 kb on + strand at 248.408 kb on - strand at 248.408 kb on - strand at 248.408 kb on - strand at 248.414 kb on + strand at 248.414 kb on + strand at 248.419 kb on + strand at 248.419 kb on + strand at 248.420 kb on - strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.495 kb on + strand at 248.496 kb on - strand at 248.497 kb on + strand at 248.498 kb on - strand at 248.559 kb on + strand at 248.560 kb on - strand at 248.560 kb on - strand at 248.560 kb on - strand at 248.560 kb on - strand at 248.560 kb on - strand at 248.560 kb on - strand at 248.573 kb on + strand at 248.574 kb on - strand at 248.574 kb on - strand at 248.634 kb on + strand at 248.634 kb on + strand at 248.635 kb on - strand at 248.635 kb on - strand at 248.635 kb on - strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.669 kb on - strand at 248.669 kb on - strand at 248.669 kb on - strand at 248.669 kb on - strand at 248.669 kb on - strand at 248.669 kb on - strand at 248.686 kb on + strand at 248.686 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 247,500 - GFF2191 0.64 -0.2 247,500 - GFF2191 0.64 -0.3 247,500 - GFF2191 0.64 -0.8 247,500 - GFF2191 0.64 +0.7 247,902 + -0.5 247,903 - -0.4 247,903 - -0.2 247,903 - +0.2 247,903 - +1.2 248,127 + GFF2192 0.60 +0.4 248,127 + GFF2192 0.60 -1.5 248,128 - GFF2192 0.60 -1.7 248,172 + GFF2192 0.71 -1.6 248,250 + GFF2192 0.89 -0.5 248,251 - GFF2192 0.89 -0.6 248,251 - GFF2192 0.89 -0.2 248,299 + -0.5 248,299 + -0.7 248,299 + -0.7 248,299 + +1.0 248,299 + -0.3 248,299 + +0.5 248,299 + -0.3 248,299 + +0.4 248,299 + +0.0 248,299 + -0.6 248,299 + -0.3 248,299 + +0.5 248,299 + -0.5 248,299 + -0.6 248,299 + -1.0 248,300 - -1.2 248,300 - -0.4 248,300 - -0.5 248,300 - -0.8 248,300 - -1.2 248,300 - -0.8 248,300 - -0.3 248,300 - -1.1 248,300 - +0.3 248,300 - -0.1 248,300 - -0.5 248,300 - +1.3 248,300 - -0.8 248,300 - +0.9 248,300 - -1.1 248,300 - +0.0 248,301 + +0.1 248,301 + +0.0 248,301 + -0.1 248,301 + -0.9 248,301 + +0.3 248,301 + +0.3 248,301 + +0.1 248,301 + -1.9 248,301 + +0.1 248,301 + -0.5 248,301 + -0.6 248,301 + -0.0 248,301 + +0.3 248,301 + +0.1 248,301 + +1.0 248,301 + -0.5 248,301 + +0.1 248,301 + -0.3 248,301 + -0.2 248,301 + -0.7 248,301 + -0.0 248,301 + -0.0 248,301 + +0.4 248,301 + +0.2 248,301 + -0.5 248,301 + +0.2 248,301 + -0.9 248,301 + +0.8 248,301 + -0.9 248,301 + -0.3 248,301 + -0.1 248,301 + +0.3 248,301 + -1.0 248,301 + -0.8 248,301 + -1.0 248,301 + -0.8 248,301 + -0.4 248,301 + -0.0 248,301 + -0.6 248,301 + +0.8 248,301 + -1.5 248,301 + -0.5 248,301 + +0.8 248,301 + +0.1 248,301 + +0.4 248,301 + +1.2 248,301 + +0.2 248,301 + +0.0 248,301 + -1.3 248,301 + +0.5 248,301 + -0.2 248,301 + -0.3 248,301 + +1.1 248,301 + +0.8 248,302 - -1.2 248,302 - +1.0 248,302 - -0.5 248,302 - -0.1 248,302 - -0.4 248,302 - -0.4 248,302 - +0.1 248,302 - +0.2 248,302 - +0.2 248,302 - -0.2 248,302 - -0.4 248,302 - +0.0 248,302 - -0.3 248,302 - +0.2 248,302 - -1.0 248,302 - -1.5 248,302 - -0.2 248,302 - -0.1 248,302 - +0.5 248,302 - -0.4 248,302 - -0.2 248,302 - -0.5 248,302 - +0.2 248,302 - -0.9 248,302 - -0.0 248,302 - +3.4 248,302 - +0.1 248,302 - +0.5 248,302 - +0.0 248,302 - +0.6 248,302 - -0.4 248,302 - -1.5 248,302 - +0.0 248,302 - -0.5 248,302 - -1.6 248,302 - +1.2 248,302 - +0.3 248,302 - +0.0 248,302 - -0.3 248,302 - -0.1 248,302 - -0.5 248,302 - +0.3 248,302 - -1.3 248,302 - -0.2 248,302 - -0.4 248,302 - -1.0 248,302 - +0.2 248,302 - -0.7 248,302 - +0.6 248,302 - -0.1 248,302 - +0.2 248,302 - -1.0 248,302 - -0.6 248,302 - +0.7 248,302 - -0.2 248,303 + +0.7 248,303 + +0.7 248,303 + -0.5 248,303 + -0.4 248,303 + -0.3 248,303 + -0.0 248,303 + -0.7 248,303 + +1.0 248,303 + -0.8 248,303 + -0.9 248,303 + -0.4 248,303 + -1.6 248,303 + +0.7 248,303 + -1.2 248,303 + -0.3 248,303 + -1.7 248,303 + -0.0 248,303 + -0.2 248,303 + +0.6 248,303 + -0.1 248,303 + +0.2 248,303 + -0.2 248,303 + +0.2 248,303 + +0.5 248,303 + -0.3 248,303 + -1.1 248,303 + +0.5 248,303 + -0.5 248,303 + +0.2 248,303 + -1.2 248,303 + -0.2 248,303 + -0.2 248,303 + +0.0 248,303 + +0.2 248,304 - -0.0 248,304 - -0.5 248,304 - -0.2 248,304 - +0.1 248,304 - +0.1 248,304 - +0.2 248,304 - +0.4 248,304 - -0.4 248,304 - +0.2 248,304 - +0.0 248,304 - -0.2 248,304 - +0.5 248,304 - +1.4 248,304 - -0.7 248,304 - +0.0 248,304 - -0.2 248,304 - -0.4 248,304 - -1.5 248,304 - +0.4 248,304 - -0.2 248,304 - +0.7 248,304 - -0.4 248,304 - -0.8 248,304 - -1.3 248,304 - -1.9 248,304 - -0.2 248,304 - +0.2 248,304 - -2.3 248,304 - -0.5 248,304 - -1.3 248,304 - -0.8 248,304 - -0.6 248,304 - +0.4 248,304 - +0.4 248,304 - -1.0 248,304 - +0.7 248,304 - -0.4 248,304 - -0.6 248,304 - +1.0 248,304 - +0.8 248,304 - -0.3 248,304 - -0.6 248,304 - -0.3 248,304 - +0.0 248,304 - +0.4 248,304 - -0.6 248,304 - -0.5 248,304 - -0.5 248,304 - +0.7 248,304 - -0.3 248,307 + +0.1 248,307 + +0.8 248,307 + +0.4 248,307 + -0.5 248,307 + -1.0 248,307 + -1.2 248,307 + -0.4 248,307 + -0.4 248,307 + +0.8 248,307 + -0.6 248,307 + +0.8 248,307 + +0.1 248,307 + -0.2 248,307 + -1.2 248,307 + -0.0 248,307 + -0.3 248,307 + +0.2 248,307 + -0.3 248,307 + +0.4 248,307 + -0.2 248,307 + -0.2 248,307 + -0.6 248,307 + -0.8 248,307 + -0.9 248,307 + -0.9 248,307 + +0.2 248,308 - -0.5 248,308 - -1.1 248,308 - -0.1 248,308 - +0.1 248,308 - -0.3 248,308 - +0.1 248,308 - -0.7 248,308 - -1.4 248,308 - -0.2 248,308 - +0.2 248,308 - -0.2 248,308 - -0.1 248,308 - -0.8 248,308 - -0.3 248,308 - -0.9 248,308 - +0.0 248,322 + -0.1 248,408 - -0.1 248,408 - +0.7 248,408 - +0.2 248,414 + -1.0 248,414 + +0.8 248,419 + +0.6 248,419 + +0.2 248,420 - +0.8 248,443 + -0.5 248,443 + -0.3 248,443 + -2.6 248,443 + -0.3 248,443 + -0.2 248,443 + +0.4 248,443 + -0.1 248,443 + -0.2 248,444 - -0.7 248,444 - +0.2 248,444 - +0.2 248,444 - +0.1 248,444 - -0.5 248,444 - +1.1 248,444 - +0.0 248,444 - +0.0 248,444 - -0.2 248,444 - -1.2 248,495 + -0.0 248,496 - +0.0 248,497 + +0.2 248,498 - +0.2 248,559 + -0.6 248,560 - -0.3 248,560 - +1.1 248,560 - -0.8 248,560 - +1.0 248,560 - +0.5 248,560 - -0.1 248,573 + +0.8 248,574 - +0.7 248,574 - -1.0 248,634 + -0.5 248,634 + -0.5 248,635 - +0.0 248,635 - -0.2 248,635 - -0.0 248,668 + -0.6 248,668 + +0.2 248,668 + -0.1 248,668 + -0.7 248,668 + +0.4 248,668 + +0.0 248,668 + +0.1 248,668 + +0.2 248,669 - -1.5 248,669 - -1.0 248,669 - +0.8 248,669 - +0.1 248,669 - -0.8 248,669 - -0.2 248,686 + +0.8 248,686 + -1.3
Or see this region's nucleotide sequence