Strain Fitness in Variovorax sp. SCN45 around GFF1919

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1917 and GFF1918 are separated by 59 nucleotidesGFF1918 and GFF1919 are separated by 114 nucleotidesGFF1919 and GFF1920 overlap by 4 nucleotidesGFF1920 and GFF1921 overlap by 4 nucleotides GFF1917 - ATP-dependent RNA helicase Bcep18194_A5658, at 596,937 to 598,406 GFF1917 GFF1918 - hypothetical protein, at 598,466 to 598,690 GFF1918 GFF1919 - Rhodanese-related sulfurtransferase, 4 domains, at 598,805 to 600,475 GFF1919 GFF1920 - Cysteine dioxygenase (EC 1.13.11.20), at 600,472 to 601,077 GFF1920 GFF1921 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 601,074 to 602,063 GFF1921 Position (kb) 598 599 600 601Strain fitness (log2 ratio) -2 -1 0 1 2at 597.889 kb on + strand, within GFF1917at 597.889 kb on + strand, within GFF1917at 597.889 kb on + strand, within GFF1917at 597.933 kb on + strand, within GFF1917at 597.934 kb on - strand, within GFF1917at 598.273 kb on - strandat 598.273 kb on - strandat 598.273 kb on - strandat 598.492 kb on - strand, within GFF1918at 598.530 kb on + strand, within GFF1918at 598.531 kb on - strand, within GFF1918at 598.531 kb on - strand, within GFF1918at 598.531 kb on - strand, within GFF1918at 598.531 kb on - strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.578 kb on + strand, within GFF1918at 598.578 kb on + strand, within GFF1918at 598.578 kb on + strand, within GFF1918at 598.578 kb on + strand, within GFF1918at 598.579 kb on - strand, within GFF1918at 598.579 kb on - strand, within GFF1918at 598.579 kb on - strand, within GFF1918at 598.579 kb on - strand, within GFF1918at 598.721 kb on + strandat 598.721 kb on + strandat 598.722 kb on - strandat 598.782 kb on + strandat 598.782 kb on + strandat 598.782 kb on + strandat 598.783 kb on - strandat 598.783 kb on - strandat 598.783 kb on - strandat 598.900 kb on - strandat 598.914 kb on + strandat 598.914 kb on + strandat 598.915 kb on - strandat 598.915 kb on - strandat 598.915 kb on - strandat 598.953 kb on + strandat 598.954 kb on - strandat 599.119 kb on - strand, within GFF1919at 599.155 kb on - strand, within GFF1919at 599.214 kb on + strand, within GFF1919at 599.214 kb on + strand, within GFF1919at 599.215 kb on - strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.619 kb on + strand, within GFF1919at 599.620 kb on - strand, within GFF1919at 599.620 kb on - strand, within GFF1919at 599.945 kb on + strand, within GFF1919at 599.945 kb on + strand, within GFF1919at 599.945 kb on + strand, within GFF1919at 599.997 kb on + strand, within GFF1919at 600.207 kb on + strand, within GFF1919at 600.271 kb on - strand, within GFF1919at 600.581 kb on + strand, within GFF1920at 600.581 kb on + strand, within GFF1920at 600.581 kb on + strand, within GFF1920at 600.581 kb on + strand, within GFF1920at 600.581 kb on + strand, within GFF1920at 600.582 kb on - strand, within GFF1920at 600.582 kb on - strand, within GFF1920at 600.582 kb on - strand, within GFF1920at 600.582 kb on - strand, within GFF1920at 600.585 kb on + strand, within GFF1920at 600.585 kb on + strand, within GFF1920at 600.585 kb on + strand, within GFF1920at 600.586 kb on - strand, within GFF1920at 600.586 kb on - strand, within GFF1920at 600.586 kb on - strand, within GFF1920at 600.779 kb on + strand, within GFF1920at 600.780 kb on - strand, within GFF1920at 600.914 kb on + strand, within GFF1920at 601.274 kb on - strand, within GFF1921at 601.285 kb on + strand, within GFF1921at 601.286 kb on - strand, within GFF1921at 601.286 kb on - strand, within GFF1921at 601.468 kb on + strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.472 kb on - strand, within GFF1921at 601.472 kb on - strand, within GFF1921

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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597,889 + GFF1917 0.65 -1.4
597,889 + GFF1917 0.65 -0.3
597,889 + GFF1917 0.65 -0.4
597,933 + GFF1917 0.68 -1.1
597,934 - GFF1917 0.68 -0.6
598,273 - +0.6
598,273 - +0.2
598,273 - -1.2
598,492 - GFF1918 0.12 +0.1
598,530 + GFF1918 0.28 +1.8
598,531 - GFF1918 0.29 -1.1
598,531 - GFF1918 0.29 -0.1
598,531 - GFF1918 0.29 +0.3
598,531 - GFF1918 0.29 -0.1
598,563 + GFF1918 0.43 -0.3
598,563 + GFF1918 0.43 +0.4
598,563 + GFF1918 0.43 +0.6
598,563 + GFF1918 0.43 -1.2
598,563 + GFF1918 0.43 -0.0
598,563 + GFF1918 0.43 -0.2
598,563 + GFF1918 0.43 +1.0
598,563 + GFF1918 0.43 -0.5
598,564 - GFF1918 0.44 -0.5
598,564 - GFF1918 0.44 -0.7
598,564 - GFF1918 0.44 -0.4
598,564 - GFF1918 0.44 +0.3
598,564 - GFF1918 0.44 +0.3
598,564 - GFF1918 0.44 -0.9
598,564 - GFF1918 0.44 -0.5
598,564 - GFF1918 0.44 +0.1
598,564 - GFF1918 0.44 +0.6
598,564 - GFF1918 0.44 -0.2
598,564 - GFF1918 0.44 -0.5
598,564 - GFF1918 0.44 -0.5
598,564 - GFF1918 0.44 -0.2
598,564 - GFF1918 0.44 -0.5
598,578 + GFF1918 0.50 -0.4
598,578 + GFF1918 0.50 -0.4
598,578 + GFF1918 0.50 -0.3
598,578 + GFF1918 0.50 -0.3
598,579 - GFF1918 0.50 +0.2
598,579 - GFF1918 0.50 +0.1
598,579 - GFF1918 0.50 -0.5
598,579 - GFF1918 0.50 +0.3
598,721 + -0.1
598,721 + -0.4
598,722 - -0.4
598,782 + -0.7
598,782 + +1.0
598,782 + -1.4
598,783 - +1.0
598,783 - -1.0
598,783 - +2.2
598,900 - +0.5
598,914 + +0.6
598,914 + -1.4
598,915 - -0.3
598,915 - -0.1
598,915 - -0.5
598,953 + -0.6
598,954 - +0.4
599,119 - GFF1919 0.19 +0.8
599,155 - GFF1919 0.21 +1.0
599,214 + GFF1919 0.24 -0.4
599,214 + GFF1919 0.24 -0.5
599,215 - GFF1919 0.25 +0.1
599,244 + GFF1919 0.26 -2.1
599,244 + GFF1919 0.26 +2.2
599,244 + GFF1919 0.26 -0.6
599,244 + GFF1919 0.26 +0.4
599,244 + GFF1919 0.26 +0.7
599,244 + GFF1919 0.26 +0.0
599,244 + GFF1919 0.26 +0.5
599,245 - GFF1919 0.26 -0.9
599,245 - GFF1919 0.26 +0.5
599,245 - GFF1919 0.26 +0.3
599,245 - GFF1919 0.26 -0.2
599,245 - GFF1919 0.26 -0.1
599,245 - GFF1919 0.26 -1.5
599,619 + GFF1919 0.49 +0.2
599,620 - GFF1919 0.49 -0.1
599,620 - GFF1919 0.49 -0.7
599,945 + GFF1919 0.68 -0.4
599,945 + GFF1919 0.68 -0.0
599,945 + GFF1919 0.68 -0.1
599,997 + GFF1919 0.71 +1.3
600,207 + GFF1919 0.84 +0.4
600,271 - GFF1919 0.88 -0.2
600,581 + GFF1920 0.18 -1.2
600,581 + GFF1920 0.18 +0.2
600,581 + GFF1920 0.18 -1.2
600,581 + GFF1920 0.18 +0.3
600,581 + GFF1920 0.18 +0.3
600,582 - GFF1920 0.18 -0.3
600,582 - GFF1920 0.18 -0.0
600,582 - GFF1920 0.18 -0.8
600,582 - GFF1920 0.18 +1.0
600,585 + GFF1920 0.19 -0.0
600,585 + GFF1920 0.19 -0.8
600,585 + GFF1920 0.19 -0.3
600,586 - GFF1920 0.19 +0.4
600,586 - GFF1920 0.19 -0.6
600,586 - GFF1920 0.19 -0.8
600,779 + GFF1920 0.51 -0.2
600,780 - GFF1920 0.51 -0.3
600,914 + GFF1920 0.73 +0.2
601,274 - GFF1921 0.20 -0.5
601,285 + GFF1921 0.21 +0.8
601,286 - GFF1921 0.21 -0.8
601,286 - GFF1921 0.21 +0.1
601,468 + GFF1921 0.40 -0.1
601,469 - GFF1921 0.40 -0.3
601,469 - GFF1921 0.40 +1.3
601,469 - GFF1921 0.40 +1.5
601,469 - GFF1921 0.40 -0.5
601,469 - GFF1921 0.40 -0.3
601,472 - GFF1921 0.40 -0.1
601,472 - GFF1921 0.40 +0.8

Or see this region's nucleotide sequence