Strain Fitness in Variovorax sp. SCN45 around GFF1625

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1624 and GFF1625 are separated by 212 nucleotidesGFF1625 and GFF1626 are separated by 71 nucleotidesGFF1626 and GFF1627 are separated by 75 nucleotides GFF1624 - Alcohol dehydrogenase (EC 1.1.1.1), at 224,728 to 225,819 GFF1624 GFF1625 - Transcriptional regulator, LysR family, at 226,032 to 226,898 GFF1625 GFF1626 - hypothetical protein, at 226,970 to 227,512 GFF1626 GFF1627 - ABC-type siderophore export system, fused ATPase and permease components, at 227,588 to 229,267 GFF1627 Position (kb) 226 227Strain fitness (log2 ratio) -1 0 1at 225.338 kb on + strand, within GFF1624at 225.943 kb on + strandat 226.234 kb on - strand, within GFF1625at 226.670 kb on - strand, within GFF1625at 226.825 kb on - strandat 226.971 kb on + strandat 226.971 kb on + strandat 226.972 kb on - strandat 227.745 kb on + strandat 227.746 kb on - strandat 227.820 kb on + strand, within GFF1627at 227.820 kb on + strand, within GFF1627at 227.869 kb on - strand, within GFF1627

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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225,338 + GFF1624 0.56 +0.0
225,943 + -0.2
226,234 - GFF1625 0.23 -0.5
226,670 - GFF1625 0.74 -1.1
226,825 - -0.3
226,971 + -1.2
226,971 + +0.5
226,972 - +0.9
227,745 + -0.9
227,746 - +0.5
227,820 + GFF1627 0.14 +0.9
227,820 + GFF1627 0.14 -0.1
227,869 - GFF1627 0.17 -0.2

Or see this region's nucleotide sequence