Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1598 and GFF1599 overlap by 4 nucleotides GFF1599 and GFF1600 overlap by 4 nucleotides GFF1600 and GFF1601 are separated by 19 nucleotides
GFF1598 - no description, at 196,750 to 197,148
GFF1598
GFF1599 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 197,145 to 198,116
GFF1599
GFF1600 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 198,113 to 199,000
GFF1600
GFF1601 - no description, at 199,020 to 200,219
GFF1601
Position (kb) 198
199
200 Strain fitness (log2 ratio) -2
-1
0
1
2 at 197.431 kb on + strand, within GFF1599 at 197.461 kb on + strand, within GFF1599 at 197.461 kb on + strand, within GFF1599 at 197.461 kb on + strand, within GFF1599 at 197.462 kb on - strand, within GFF1599 at 197.462 kb on - strand, within GFF1599 at 197.500 kb on + strand, within GFF1599 at 197.518 kb on + strand, within GFF1599 at 197.518 kb on + strand, within GFF1599 at 197.518 kb on + strand, within GFF1599 at 197.518 kb on + strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.717 kb on - strand, within GFF1599 at 197.860 kb on + strand, within GFF1599 at 197.887 kb on + strand, within GFF1599 at 197.983 kb on + strand, within GFF1599 at 197.984 kb on - strand, within GFF1599 at 197.984 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 198.073 kb on + strand at 198.073 kb on + strand at 198.074 kb on - strand at 198.074 kb on - strand at 198.074 kb on - strand at 198.106 kb on + strand at 198.106 kb on + strand at 198.107 kb on - strand at 198.107 kb on - strand at 198.107 kb on - strand at 198.204 kb on + strand, within GFF1600 at 198.715 kb on + strand, within GFF1600 at 198.715 kb on + strand, within GFF1600 at 199.066 kb on + strand at 199.303 kb on + strand, within GFF1601 at 199.303 kb on + strand, within GFF1601 at 199.318 kb on + strand, within GFF1601 at 199.318 kb on + strand, within GFF1601 at 199.319 kb on - strand, within GFF1601 at 199.319 kb on - strand, within GFF1601 at 199.363 kb on + strand, within GFF1601 at 199.363 kb on + strand, within GFF1601 at 199.364 kb on - strand, within GFF1601 at 199.364 kb on - strand, within GFF1601 at 199.403 kb on - strand, within GFF1601 at 199.487 kb on - strand, within GFF1601 at 199.499 kb on - strand, within GFF1601 at 199.512 kb on + strand, within GFF1601 at 199.534 kb on + strand, within GFF1601 at 199.535 kb on - strand, within GFF1601 at 199.615 kb on + strand, within GFF1601 at 199.675 kb on + strand, within GFF1601 at 199.675 kb on + strand, within GFF1601 at 199.676 kb on - strand, within GFF1601 at 199.795 kb on + strand, within GFF1601 at 199.796 kb on - strand, within GFF1601 at 199.903 kb on + strand, within GFF1601 at 199.904 kb on - strand, within GFF1601 at 199.904 kb on - strand, within GFF1601 at 199.904 kb on - strand, within GFF1601
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 197,431 + GFF1599 0.29 -1.3 197,461 + GFF1599 0.33 +0.1 197,461 + GFF1599 0.33 -1.1 197,461 + GFF1599 0.33 -0.2 197,462 - GFF1599 0.33 -1.4 197,462 - GFF1599 0.33 -0.4 197,500 + GFF1599 0.37 -1.3 197,518 + GFF1599 0.38 -0.9 197,518 + GFF1599 0.38 -0.8 197,518 + GFF1599 0.38 -0.1 197,518 + GFF1599 0.38 -1.1 197,519 - GFF1599 0.38 -0.7 197,519 - GFF1599 0.38 -0.6 197,519 - GFF1599 0.38 -0.3 197,519 - GFF1599 0.38 +0.5 197,519 - GFF1599 0.38 -0.5 197,519 - GFF1599 0.38 -0.1 197,519 - GFF1599 0.38 +0.2 197,717 - GFF1599 0.59 -1.7 197,860 + GFF1599 0.74 -1.1 197,887 + GFF1599 0.76 -0.5 197,983 + GFF1599 0.86 +0.2 197,984 - GFF1599 0.86 -0.1 197,984 - GFF1599 0.86 -0.2 197,999 - GFF1599 0.88 +0.1 197,999 - GFF1599 0.88 +0.6 197,999 - GFF1599 0.88 -0.1 197,999 - GFF1599 0.88 -0.2 197,999 - GFF1599 0.88 +0.8 198,073 + +0.0 198,073 + -0.5 198,074 - +0.6 198,074 - -0.3 198,074 - -0.4 198,106 + -0.1 198,106 + -0.1 198,107 - -1.0 198,107 - +0.5 198,107 - -1.5 198,204 + GFF1600 0.10 -1.0 198,715 + GFF1600 0.68 -0.2 198,715 + GFF1600 0.68 -0.7 199,066 + +0.2 199,303 + GFF1601 0.24 +0.8 199,303 + GFF1601 0.24 +0.2 199,318 + GFF1601 0.25 -0.5 199,318 + GFF1601 0.25 -1.7 199,319 - GFF1601 0.25 -0.8 199,319 - GFF1601 0.25 -0.3 199,363 + GFF1601 0.29 -0.3 199,363 + GFF1601 0.29 -2.0 199,364 - GFF1601 0.29 +0.0 199,364 - GFF1601 0.29 -0.5 199,403 - GFF1601 0.32 +0.6 199,487 - GFF1601 0.39 +1.8 199,499 - GFF1601 0.40 +0.2 199,512 + GFF1601 0.41 -0.0 199,534 + GFF1601 0.43 -1.8 199,535 - GFF1601 0.43 +0.5 199,615 + GFF1601 0.50 -0.7 199,675 + GFF1601 0.55 -1.9 199,675 + GFF1601 0.55 -0.1 199,676 - GFF1601 0.55 -0.3 199,795 + GFF1601 0.65 -2.2 199,796 - GFF1601 0.65 -0.0 199,903 + GFF1601 0.74 -2.0 199,904 - GFF1601 0.74 -0.7 199,904 - GFF1601 0.74 +0.0 199,904 - GFF1601 0.74 -0.5
Or see this region's nucleotide sequence