Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1491 and GFF1492 are separated by 1 nucleotides GFF1492 and GFF1493 are separated by 8 nucleotides GFF1493 and GFF1494 are separated by 45 nucleotides
GFF1491 - Gluconolactonase, at 84,309 to 85,241
GFF1491
GFF1492 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 85,243 to 86,142
GFF1492
GFF1493 - BUG/TctC family periplasmic protein, at 86,151 to 87,116
GFF1493
GFF1494 - BUG/TctC family periplasmic protein, at 87,162 to 88,142
GFF1494
Position (kb) 86
87
88 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 85.237 kb on + strand at 85.238 kb on - strand at 85.238 kb on - strand at 85.238 kb on - strand at 85.275 kb on - strand at 85.499 kb on + strand, within GFF1492 at 85.499 kb on + strand, within GFF1492 at 85.499 kb on + strand, within GFF1492 at 85.499 kb on + strand, within GFF1492 at 85.500 kb on - strand, within GFF1492 at 85.500 kb on - strand, within GFF1492 at 85.500 kb on - strand, within GFF1492 at 85.559 kb on + strand, within GFF1492 at 85.559 kb on + strand, within GFF1492 at 85.560 kb on - strand, within GFF1492 at 85.560 kb on - strand, within GFF1492 at 85.560 kb on - strand, within GFF1492 at 85.560 kb on - strand, within GFF1492 at 85.560 kb on - strand, within GFF1492 at 85.684 kb on + strand, within GFF1492 at 85.684 kb on + strand, within GFF1492 at 85.684 kb on + strand, within GFF1492 at 85.684 kb on + strand, within GFF1492 at 85.684 kb on + strand, within GFF1492 at 85.685 kb on - strand, within GFF1492 at 85.685 kb on - strand, within GFF1492 at 85.685 kb on - strand, within GFF1492 at 85.685 kb on - strand, within GFF1492 at 86.203 kb on + strand at 86.377 kb on + strand, within GFF1493 at 86.386 kb on + strand, within GFF1493 at 86.573 kb on - strand, within GFF1493 at 86.831 kb on - strand, within GFF1493 at 86.845 kb on + strand, within GFF1493 at 86.845 kb on + strand, within GFF1493 at 86.845 kb on + strand, within GFF1493 at 86.857 kb on + strand, within GFF1493 at 87.203 kb on - strand at 87.379 kb on + strand, within GFF1494 at 87.397 kb on + strand, within GFF1494 at 87.397 kb on + strand, within GFF1494 at 87.671 kb on - strand, within GFF1494 at 87.671 kb on - strand, within GFF1494 at 87.671 kb on - strand, within GFF1494 at 87.671 kb on - strand, within GFF1494 at 87.826 kb on + strand, within GFF1494 at 87.827 kb on - strand, within GFF1494 at 87.874 kb on + strand, within GFF1494 at 87.874 kb on + strand, within GFF1494 at 87.874 kb on + strand, within GFF1494 at 87.874 kb on + strand, within GFF1494 at 87.875 kb on - strand, within GFF1494
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 85,237 + +0.2 85,238 - +4.9 85,238 - +0.2 85,238 - -0.2 85,275 - +0.3 85,499 + GFF1492 0.28 -0.1 85,499 + GFF1492 0.28 -0.6 85,499 + GFF1492 0.28 +0.3 85,499 + GFF1492 0.28 +0.7 85,500 - GFF1492 0.29 -0.8 85,500 - GFF1492 0.29 +0.8 85,500 - GFF1492 0.29 +0.8 85,559 + GFF1492 0.35 +0.2 85,559 + GFF1492 0.35 -0.4 85,560 - GFF1492 0.35 -0.2 85,560 - GFF1492 0.35 -0.0 85,560 - GFF1492 0.35 +0.1 85,560 - GFF1492 0.35 -1.0 85,560 - GFF1492 0.35 -0.6 85,684 + GFF1492 0.49 -0.2 85,684 + GFF1492 0.49 -0.4 85,684 + GFF1492 0.49 +0.0 85,684 + GFF1492 0.49 +0.4 85,684 + GFF1492 0.49 +0.2 85,685 - GFF1492 0.49 -1.0 85,685 - GFF1492 0.49 -0.1 85,685 - GFF1492 0.49 +0.5 85,685 - GFF1492 0.49 +1.0 86,203 + +0.9 86,377 + GFF1493 0.23 -0.9 86,386 + GFF1493 0.24 -0.2 86,573 - GFF1493 0.44 +0.4 86,831 - GFF1493 0.70 -1.1 86,845 + GFF1493 0.72 +0.4 86,845 + GFF1493 0.72 -0.9 86,845 + GFF1493 0.72 -0.3 86,857 + GFF1493 0.73 -0.6 87,203 - +0.4 87,379 + GFF1494 0.22 -0.2 87,397 + GFF1494 0.24 -0.1 87,397 + GFF1494 0.24 +0.8 87,671 - GFF1494 0.52 -0.5 87,671 - GFF1494 0.52 +2.3 87,671 - GFF1494 0.52 -0.7 87,671 - GFF1494 0.52 -0.0 87,826 + GFF1494 0.68 +0.9 87,827 - GFF1494 0.68 -0.3 87,874 + GFF1494 0.73 -0.5 87,874 + GFF1494 0.73 -0.3 87,874 + GFF1494 0.73 -1.8 87,874 + GFF1494 0.73 -0.2 87,875 - GFF1494 0.73 +0.1
Or see this region's nucleotide sequence