Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS17050

Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08620 and A4249_RS17050 are separated by 405 nucleotidesA4249_RS17050 and A4249_RS08630 are separated by 4 nucleotidesA4249_RS08630 and A4249_RS08635 are separated by 48 nucleotides A4249_RS08620: A4249_RS08620 - flagellar hook-associated protein FlgK, at 1,729,392 to 1,731,491 _RS08620 A4249_RS17050: A4249_RS17050 - flagellar hook-length control protein FliK, at 1,731,897 to 1,733,831 _RS17050 A4249_RS08630: A4249_RS08630 - flagellar hook capping FlgD N-terminal domain-containing protein, at 1,733,836 to 1,734,564 _RS08630 A4249_RS08635: A4249_RS08635 - flagellar hook protein FlgE, at 1,734,613 to 1,736,370 _RS08635 Position (kb) 1731 1732 1733 1734Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1731.109 kb on + strand, within A4249_RS08620at 1731.109 kb on + strand, within A4249_RS08620at 1731.109 kb on + strand, within A4249_RS08620at 1731.109 kb on + strand, within A4249_RS08620at 1731.109 kb on + strand, within A4249_RS08620at 1731.109 kb on + strand, within A4249_RS08620at 1731.109 kb on + strand, within A4249_RS08620at 1731.109 kb on + strand, within A4249_RS08620at 1731.109 kb on + strand, within A4249_RS08620at 1731.110 kb on - strand, within A4249_RS08620at 1731.110 kb on - strand, within A4249_RS08620at 1731.110 kb on - strand, within A4249_RS08620at 1731.110 kb on - strand, within A4249_RS08620at 1731.110 kb on - strand, within A4249_RS08620at 1731.110 kb on - strand, within A4249_RS08620at 1731.110 kb on - strand, within A4249_RS08620at 1731.110 kb on - strand, within A4249_RS08620at 1731.116 kb on + strand, within A4249_RS08620at 1731.117 kb on - strand, within A4249_RS08620at 1731.117 kb on - strand, within A4249_RS08620at 1731.153 kb on + strand, within A4249_RS08620at 1731.154 kb on - strand, within A4249_RS08620at 1731.163 kb on + strand, within A4249_RS08620at 1731.163 kb on + strand, within A4249_RS08620at 1731.163 kb on + strand, within A4249_RS08620at 1731.163 kb on + strand, within A4249_RS08620at 1731.163 kb on + strand, within A4249_RS08620at 1731.163 kb on + strand, within A4249_RS08620at 1731.163 kb on + strand, within A4249_RS08620at 1731.163 kb on + strand, within A4249_RS08620at 1731.164 kb on - strand, within A4249_RS08620at 1731.164 kb on - strand, within A4249_RS08620at 1731.164 kb on - strand, within A4249_RS08620at 1731.164 kb on - strand, within A4249_RS08620at 1731.164 kb on - strand, within A4249_RS08620at 1731.164 kb on - strand, within A4249_RS08620at 1731.164 kb on - strand, within A4249_RS08620at 1731.244 kb on + strand, within A4249_RS08620at 1731.244 kb on + strand, within A4249_RS08620at 1731.244 kb on + strand, within A4249_RS08620at 1731.244 kb on + strand, within A4249_RS08620at 1731.244 kb on + strand, within A4249_RS08620at 1731.245 kb on - strand, within A4249_RS08620at 1731.245 kb on - strand, within A4249_RS08620at 1731.253 kb on + strand, within A4249_RS08620at 1731.358 kb on + strandat 1731.358 kb on + strandat 1731.358 kb on + strandat 1731.358 kb on + strandat 1731.403 kb on + strandat 1731.403 kb on + strandat 1731.404 kb on - strandat 1731.404 kb on - strandat 1731.413 kb on + strandat 1731.428 kb on + strandat 1731.429 kb on - strandat 1732.145 kb on + strand, within A4249_RS17050at 1732.145 kb on + strand, within A4249_RS17050at 1732.146 kb on - strand, within A4249_RS17050at 1732.146 kb on - strand, within A4249_RS17050at 1732.146 kb on - strand, within A4249_RS17050at 1732.146 kb on - strand, within A4249_RS17050at 1732.430 kb on + strand, within A4249_RS17050at 1732.652 kb on + strand, within A4249_RS17050at 1732.652 kb on + strand, within A4249_RS17050at 1732.652 kb on + strand, within A4249_RS17050at 1732.652 kb on + strand, within A4249_RS17050at 1732.652 kb on + strand, within A4249_RS17050at 1732.652 kb on + strand, within A4249_RS17050at 1732.652 kb on + strand, within A4249_RS17050at 1732.653 kb on - strand, within A4249_RS17050at 1732.653 kb on - strand, within A4249_RS17050at 1732.653 kb on - strand, within A4249_RS17050at 1732.653 kb on - strand, within A4249_RS17050at 1734.097 kb on + strand, within A4249_RS08630at 1734.097 kb on + strand, within A4249_RS08630at 1734.097 kb on + strand, within A4249_RS08630at 1734.097 kb on + strand, within A4249_RS08630at 1734.097 kb on + strand, within A4249_RS08630at 1734.097 kb on + strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.166 kb on + strand, within A4249_RS08630at 1734.166 kb on + strand, within A4249_RS08630at 1734.167 kb on - strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.328 kb on + strand, within A4249_RS08630at 1734.328 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.419 kb on - strand, within A4249_RS08630at 1734.419 kb on - strand, within A4249_RS08630at 1734.419 kb on - strand, within A4249_RS08630at 1734.419 kb on - strand, within A4249_RS08630at 1734.419 kb on - strand, within A4249_RS08630at 1734.433 kb on + strand, within A4249_RS08630at 1734.433 kb on + strand, within A4249_RS08630at 1734.434 kb on - strand, within A4249_RS08630at 1734.434 kb on - strand, within A4249_RS08630at 1734.434 kb on - strand, within A4249_RS08630at 1734.593 kb on + strandat 1734.593 kb on + strandat 1734.593 kb on + strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.597 kb on + strandat 1734.597 kb on + strandat 1734.597 kb on + strandat 1734.597 kb on + strandat 1734.597 kb on + strandat 1734.597 kb on + strandat 1734.598 kb on - strandat 1734.598 kb on - strandat 1734.704 kb on + strandat 1734.705 kb on - strandat 1734.705 kb on - strandat 1734.705 kb on - strandat 1734.705 kb on - strandat 1734.718 kb on + strandat 1734.718 kb on + strandat 1734.719 kb on - strandat 1734.719 kb on - strandat 1734.719 kb on - strandat 1734.719 kb on - strandat 1734.719 kb on - strandat 1734.781 kb on + strandat 1734.781 kb on + strandat 1734.781 kb on + strandat 1734.781 kb on + strandat 1734.781 kb on + strandat 1734.782 kb on - strandat 1734.782 kb on - strandat 1734.782 kb on - strandat 1734.782 kb on - strandat 1734.782 kb on - strandat 1734.817 kb on + strand, within A4249_RS08635at 1734.817 kb on + strand, within A4249_RS08635at 1734.817 kb on + strand, within A4249_RS08635at 1734.817 kb on + strand, within A4249_RS08635at 1734.817 kb on + strand, within A4249_RS08635at 1734.817 kb on + strand, within A4249_RS08635at 1734.817 kb on + strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
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1,731,109 + A4249_RS08620 0.82 -0.0
1,731,109 + A4249_RS08620 0.82 -1.3
1,731,109 + A4249_RS08620 0.82 +0.2
1,731,109 + A4249_RS08620 0.82 +0.1
1,731,109 + A4249_RS08620 0.82 -1.4
1,731,109 + A4249_RS08620 0.82 -0.8
1,731,109 + A4249_RS08620 0.82 +0.3
1,731,109 + A4249_RS08620 0.82 -0.1
1,731,109 + A4249_RS08620 0.82 +0.6
1,731,110 - A4249_RS08620 0.82 +2.0
1,731,110 - A4249_RS08620 0.82 +0.1
1,731,110 - A4249_RS08620 0.82 -0.2
1,731,110 - A4249_RS08620 0.82 -1.3
1,731,110 - A4249_RS08620 0.82 +4.1
1,731,110 - A4249_RS08620 0.82 -0.3
1,731,110 - A4249_RS08620 0.82 +0.0
1,731,110 - A4249_RS08620 0.82 +0.9
1,731,116 + A4249_RS08620 0.82 +1.6
1,731,117 - A4249_RS08620 0.82 -0.7
1,731,117 - A4249_RS08620 0.82 -0.3
1,731,153 + A4249_RS08620 0.84 +0.0
1,731,154 - A4249_RS08620 0.84 +0.6
1,731,163 + A4249_RS08620 0.84 -1.1
1,731,163 + A4249_RS08620 0.84 -0.3
1,731,163 + A4249_RS08620 0.84 +0.4
1,731,163 + A4249_RS08620 0.84 +0.2
1,731,163 + A4249_RS08620 0.84 +1.0
1,731,163 + A4249_RS08620 0.84 -0.0
1,731,163 + A4249_RS08620 0.84 -1.6
1,731,163 + A4249_RS08620 0.84 -0.0
1,731,164 - A4249_RS08620 0.84 +0.0
1,731,164 - A4249_RS08620 0.84 -0.2
1,731,164 - A4249_RS08620 0.84 +0.6
1,731,164 - A4249_RS08620 0.84 +0.1
1,731,164 - A4249_RS08620 0.84 -0.0
1,731,164 - A4249_RS08620 0.84 -0.1
1,731,164 - A4249_RS08620 0.84 -0.7
1,731,244 + A4249_RS08620 0.88 +0.1
1,731,244 + A4249_RS08620 0.88 -0.3
1,731,244 + A4249_RS08620 0.88 -0.1
1,731,244 + A4249_RS08620 0.88 +0.1
1,731,244 + A4249_RS08620 0.88 +0.4
1,731,245 - A4249_RS08620 0.88 -0.3
1,731,245 - A4249_RS08620 0.88 +0.6
1,731,253 + A4249_RS08620 0.89 +1.3
1,731,358 + -0.7
1,731,358 + +1.5
1,731,358 + +1.0
1,731,358 + -1.7
1,731,403 + -0.9
1,731,403 + -0.6
1,731,404 - +1.3
1,731,404 - +0.7
1,731,413 + +0.1
1,731,428 + -0.2
1,731,429 - -0.9
1,732,145 + A4249_RS17050 0.13 +0.0
1,732,145 + A4249_RS17050 0.13 +2.0
1,732,146 - A4249_RS17050 0.13 +0.9
1,732,146 - A4249_RS17050 0.13 +0.4
1,732,146 - A4249_RS17050 0.13 +1.3
1,732,146 - A4249_RS17050 0.13 -1.1
1,732,430 + A4249_RS17050 0.28 -0.0
1,732,652 + A4249_RS17050 0.39 -0.9
1,732,652 + A4249_RS17050 0.39 -0.6
1,732,652 + A4249_RS17050 0.39 +1.5
1,732,652 + A4249_RS17050 0.39 +0.5
1,732,652 + A4249_RS17050 0.39 +0.3
1,732,652 + A4249_RS17050 0.39 -1.7
1,732,652 + A4249_RS17050 0.39 +0.4
1,732,653 - A4249_RS17050 0.39 +1.7
1,732,653 - A4249_RS17050 0.39 -1.0
1,732,653 - A4249_RS17050 0.39 +2.9
1,732,653 - A4249_RS17050 0.39 -0.8
1,734,097 + A4249_RS08630 0.36 +1.0
1,734,097 + A4249_RS08630 0.36 -1.3
1,734,097 + A4249_RS08630 0.36 -0.1
1,734,097 + A4249_RS08630 0.36 -2.2
1,734,097 + A4249_RS08630 0.36 -1.3
1,734,097 + A4249_RS08630 0.36 +0.5
1,734,098 - A4249_RS08630 0.36 +0.2
1,734,098 - A4249_RS08630 0.36 +0.1
1,734,098 - A4249_RS08630 0.36 +1.4
1,734,098 - A4249_RS08630 0.36 -1.1
1,734,098 - A4249_RS08630 0.36 +0.3
1,734,098 - A4249_RS08630 0.36 +0.1
1,734,098 - A4249_RS08630 0.36 -0.0
1,734,166 + A4249_RS08630 0.45 -0.2
1,734,166 + A4249_RS08630 0.45 -0.4
1,734,167 - A4249_RS08630 0.45 -0.4
1,734,270 + A4249_RS08630 0.60 -0.3
1,734,270 + A4249_RS08630 0.60 -0.9
1,734,270 + A4249_RS08630 0.60 +0.5
1,734,270 + A4249_RS08630 0.60 -0.7
1,734,270 + A4249_RS08630 0.60 +0.4
1,734,270 + A4249_RS08630 0.60 -0.3
1,734,270 + A4249_RS08630 0.60 -0.3
1,734,270 + A4249_RS08630 0.60 +0.9
1,734,270 + A4249_RS08630 0.60 -0.2
1,734,270 + A4249_RS08630 0.60 +0.8
1,734,271 - A4249_RS08630 0.60 +0.1
1,734,271 - A4249_RS08630 0.60 +0.3
1,734,271 - A4249_RS08630 0.60 +0.6
1,734,271 - A4249_RS08630 0.60 +1.7
1,734,271 - A4249_RS08630 0.60 +0.7
1,734,271 - A4249_RS08630 0.60 -0.3
1,734,271 - A4249_RS08630 0.60 -0.1
1,734,271 - A4249_RS08630 0.60 -1.8
1,734,271 - A4249_RS08630 0.60 +0.2
1,734,271 - A4249_RS08630 0.60 -0.6
1,734,328 + A4249_RS08630 0.67 +0.2
1,734,328 + A4249_RS08630 0.67 -0.6
1,734,418 + A4249_RS08630 0.80 -1.1
1,734,418 + A4249_RS08630 0.80 -0.1
1,734,418 + A4249_RS08630 0.80 -1.5
1,734,418 + A4249_RS08630 0.80 +1.0
1,734,418 + A4249_RS08630 0.80 -1.7
1,734,418 + A4249_RS08630 0.80 -0.1
1,734,418 + A4249_RS08630 0.80 -0.5
1,734,418 + A4249_RS08630 0.80 +0.2
1,734,419 - A4249_RS08630 0.80 +0.6
1,734,419 - A4249_RS08630 0.80 -0.0
1,734,419 - A4249_RS08630 0.80 -0.4
1,734,419 - A4249_RS08630 0.80 -0.4
1,734,419 - A4249_RS08630 0.80 +0.3
1,734,433 + A4249_RS08630 0.82 +0.2
1,734,433 + A4249_RS08630 0.82 +0.9
1,734,434 - A4249_RS08630 0.82 -0.9
1,734,434 - A4249_RS08630 0.82 -0.1
1,734,434 - A4249_RS08630 0.82 +0.2
1,734,593 + -0.8
1,734,593 + -0.1
1,734,593 + -0.5
1,734,594 - -0.7
1,734,594 - -0.4
1,734,594 - -0.8
1,734,594 - +0.1
1,734,594 - +0.6
1,734,594 - -1.3
1,734,594 - -0.0
1,734,594 - +1.3
1,734,594 - -0.3
1,734,594 - +0.6
1,734,597 + -0.1
1,734,597 + -0.3
1,734,597 + -0.2
1,734,597 + -0.1
1,734,597 + +1.1
1,734,597 + +0.6
1,734,598 - +0.3
1,734,598 - +0.1
1,734,704 + -0.2
1,734,705 - +1.1
1,734,705 - +1.2
1,734,705 - -0.2
1,734,705 - +0.5
1,734,718 + +0.3
1,734,718 + -0.3
1,734,719 - +0.1
1,734,719 - +0.5
1,734,719 - +0.7
1,734,719 - +1.3
1,734,719 - -0.6
1,734,781 + +1.4
1,734,781 + -0.0
1,734,781 + -0.8
1,734,781 + -0.9
1,734,781 + +1.0
1,734,782 - +0.6
1,734,782 - -0.8
1,734,782 - +1.3
1,734,782 - -0.0
1,734,782 - +0.5
1,734,817 + A4249_RS08635 0.12 +0.5
1,734,817 + A4249_RS08635 0.12 +0.4
1,734,817 + A4249_RS08635 0.12 +0.1
1,734,817 + A4249_RS08635 0.12 -0.8
1,734,817 + A4249_RS08635 0.12 -0.6
1,734,817 + A4249_RS08635 0.12 +0.7
1,734,817 + A4249_RS08635 0.12 -0.2
1,734,818 - A4249_RS08635 0.12 -0.7
1,734,818 - A4249_RS08635 0.12 -0.0
1,734,818 - A4249_RS08635 0.12 +0.3
1,734,818 - A4249_RS08635 0.12 +0.2
1,734,818 - A4249_RS08635 0.12 +0.7
1,734,818 - A4249_RS08635 0.12 +0.2
1,734,818 - A4249_RS08635 0.12 +2.9

Or see this region's nucleotide sequence