Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16010

Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS16000 and A4249_RS16005 are separated by 78 nucleotidesA4249_RS16005 and A4249_RS16010 are separated by 114 nucleotidesA4249_RS16010 and A4249_RS16015 overlap by 4 nucleotidesA4249_RS16015 and A4249_RS16020 are separated by 145 nucleotidesA4249_RS16020 and A4249_RS16025 are separated by 13 nucleotides A4249_RS16000: A4249_RS16000 - hypothetical protein, at 3,225,421 to 3,228,270 _RS16000 A4249_RS16005: A4249_RS16005 - HU family DNA-binding protein, at 3,228,349 to 3,228,627 _RS16005 A4249_RS16010: A4249_RS16010 - flagellar type III secretion system pore protein FliP, at 3,228,742 to 3,229,554 _RS16010 A4249_RS16015: A4249_RS16015 - flagellar biosynthetic protein FliO, at 3,229,551 to 3,229,841 _RS16015 A4249_RS16020: A4249_RS16020 - flagellar basal body rod protein FlgB, at 3,229,987 to 3,230,391 _RS16020 A4249_RS16025: A4249_RS16025 - flagellar basal body rod protein FlgC, at 3,230,405 to 3,230,824 _RS16025 Position (kb) 3228 3229 3230Strain fitness (log2 ratio) -1 0 1at 3227.944 kb on + strand, within A4249_RS16000at 3227.944 kb on + strand, within A4249_RS16000at 3227.944 kb on + strand, within A4249_RS16000at 3227.945 kb on - strand, within A4249_RS16000at 3227.945 kb on - strand, within A4249_RS16000at 3227.945 kb on - strand, within A4249_RS16000at 3227.945 kb on - strand, within A4249_RS16000at 3227.945 kb on - strand, within A4249_RS16000at 3227.968 kb on + strand, within A4249_RS16000at 3227.968 kb on + strand, within A4249_RS16000at 3227.969 kb on - strand, within A4249_RS16000at 3227.969 kb on - strand, within A4249_RS16000at 3228.720 kb on + strandat 3228.721 kb on - strandat 3228.728 kb on + strandat 3228.729 kb on - strandat 3228.744 kb on - strandat 3229.169 kb on + strand, within A4249_RS16010at 3229.170 kb on - strand, within A4249_RS16010at 3229.170 kb on - strand, within A4249_RS16010at 3229.754 kb on - strand, within A4249_RS16015at 3229.754 kb on - strand, within A4249_RS16015at 3229.924 kb on + strandat 3230.003 kb on + strandat 3230.004 kb on - strandat 3230.089 kb on - strand, within A4249_RS16020at 3230.089 kb on - strand, within A4249_RS16020at 3230.190 kb on + strand, within A4249_RS16020at 3230.191 kb on - strand, within A4249_RS16020at 3230.317 kb on + strand, within A4249_RS16020at 3230.317 kb on + strand, within A4249_RS16020at 3230.317 kb on + strand, within A4249_RS16020at 3230.317 kb on + strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.338 kb on + strand, within A4249_RS16020at 3230.338 kb on + strand, within A4249_RS16020at 3230.338 kb on + strand, within A4249_RS16020at 3230.338 kb on + strand, within A4249_RS16020at 3230.339 kb on - strand, within A4249_RS16020at 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.403 kb on - strandat 3230.403 kb on - strandat 3230.403 kb on - strandat 3230.403 kb on - strandat 3230.403 kb on - strandat 3230.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
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3,227,944 + A4249_RS16000 0.89 -0.8
3,227,944 + A4249_RS16000 0.89 -0.3
3,227,944 + A4249_RS16000 0.89 +0.6
3,227,945 - A4249_RS16000 0.89 +0.0
3,227,945 - A4249_RS16000 0.89 +0.3
3,227,945 - A4249_RS16000 0.89 +0.3
3,227,945 - A4249_RS16000 0.89 +0.4
3,227,945 - A4249_RS16000 0.89 -0.6
3,227,968 + A4249_RS16000 0.89 +0.8
3,227,968 + A4249_RS16000 0.89 -0.6
3,227,969 - A4249_RS16000 0.89 -1.7
3,227,969 - A4249_RS16000 0.89 +0.2
3,228,720 + -0.2
3,228,721 - +1.1
3,228,728 + +0.3
3,228,729 - +1.6
3,228,744 - +0.1
3,229,169 + A4249_RS16010 0.53 +1.0
3,229,170 - A4249_RS16010 0.53 +0.2
3,229,170 - A4249_RS16010 0.53 -0.0
3,229,754 - A4249_RS16015 0.70 +0.4
3,229,754 - A4249_RS16015 0.70 -0.8
3,229,924 + -1.6
3,230,003 + -0.4
3,230,004 - +0.4
3,230,089 - A4249_RS16020 0.25 -0.8
3,230,089 - A4249_RS16020 0.25 -0.4
3,230,190 + A4249_RS16020 0.50 -0.3
3,230,191 - A4249_RS16020 0.50 -0.1
3,230,317 + A4249_RS16020 0.81 +0.2
3,230,317 + A4249_RS16020 0.81 +0.1
3,230,317 + A4249_RS16020 0.81 -0.2
3,230,317 + A4249_RS16020 0.81 -0.2
3,230,318 - A4249_RS16020 0.82 +0.9
3,230,318 - A4249_RS16020 0.82 -0.6
3,230,318 - A4249_RS16020 0.82 -1.1
3,230,318 - A4249_RS16020 0.82 +1.4
3,230,318 - A4249_RS16020 0.82 -1.2
3,230,318 - A4249_RS16020 0.82 -0.5
3,230,318 - A4249_RS16020 0.82 +1.0
3,230,318 - A4249_RS16020 0.82 -1.2
3,230,318 - A4249_RS16020 0.82 +0.1
3,230,338 + A4249_RS16020 0.87 -0.2
3,230,338 + A4249_RS16020 0.87 -0.1
3,230,338 + A4249_RS16020 0.87 -0.6
3,230,338 + A4249_RS16020 0.87 -0.5
3,230,339 - A4249_RS16020 0.87 +0.5
3,230,402 + -0.5
3,230,402 + -0.5
3,230,402 + +0.4
3,230,402 + -0.4
3,230,402 + +0.5
3,230,402 + -0.0
3,230,402 + -0.2
3,230,402 + +0.3
3,230,402 + +0.1
3,230,403 - -0.2
3,230,403 - -0.6
3,230,403 - +0.1
3,230,403 - -1.2
3,230,403 - +0.3
3,230,403 - +0.1

Or see this region's nucleotide sequence