Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15845

Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15840 and A4249_RS15845 are separated by 84 nucleotidesA4249_RS15845 and A4249_RS15850 are separated by 76 nucleotidesA4249_RS15850 and A4249_RS15855 are separated by 46 nucleotides A4249_RS15840: A4249_RS15840 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,200,298 to 3,201,071 _RS15840 A4249_RS15845: A4249_RS15845 - hemerythrin domain-containing protein, at 3,201,156 to 3,201,674 _RS15845 A4249_RS15850: A4249_RS15850 - MgtC/SapB family protein, at 3,201,751 to 3,202,446 _RS15850 A4249_RS15855: A4249_RS15855 - crossover junction endodeoxyribonuclease RuvC, at 3,202,493 to 3,203,011 _RS15855 Position (kb) 3201 3202Strain fitness (log2 ratio) -1 0 1 2at 3200.156 kb on - strandat 3200.156 kb on - strandat 3200.183 kb on + strandat 3200.183 kb on + strandat 3200.183 kb on + strandat 3200.183 kb on + strandat 3200.184 kb on - strandat 3200.184 kb on - strandat 3200.184 kb on - strandat 3200.229 kb on + strandat 3200.229 kb on + strandat 3201.060 kb on + strandat 3201.060 kb on + strandat 3201.060 kb on + strandat 3201.060 kb on + strandat 3201.061 kb on - strandat 3201.123 kb on - strandat 3201.155 kb on + strandat 3201.155 kb on + strandat 3201.318 kb on + strand, within A4249_RS15845at 3201.612 kb on + strand, within A4249_RS15845at 3201.612 kb on + strand, within A4249_RS15845at 3201.613 kb on - strand, within A4249_RS15845at 3201.613 kb on - strand, within A4249_RS15845at 3201.613 kb on - strand, within A4249_RS15845at 3201.613 kb on - strand, within A4249_RS15845at 3201.613 kb on - strand, within A4249_RS15845at 3201.613 kb on - strand, within A4249_RS15845at 3201.613 kb on - strand, within A4249_RS15845at 3201.654 kb on + strandat 3201.654 kb on + strandat 3201.654 kb on + strandat 3201.654 kb on + strandat 3201.654 kb on + strandat 3201.654 kb on + strandat 3201.654 kb on + strandat 3201.654 kb on + strandat 3201.655 kb on - strandat 3201.655 kb on - strandat 3201.655 kb on - strandat 3201.655 kb on - strandat 3201.655 kb on - strandat 3201.655 kb on - strandat 3201.655 kb on - strandat 3201.655 kb on - strandat 3201.655 kb on - strandat 3201.657 kb on - strandat 3201.763 kb on - strandat 3202.117 kb on + strand, within A4249_RS15850at 3202.117 kb on + strand, within A4249_RS15850at 3202.118 kb on - strand, within A4249_RS15850at 3202.373 kb on + strand, within A4249_RS15850at 3202.374 kb on - strand, within A4249_RS15850at 3202.374 kb on - strand, within A4249_RS15850at 3202.374 kb on - strand, within A4249_RS15850at 3202.420 kb on + strandat 3202.420 kb on + strandat 3202.420 kb on + strandat 3202.420 kb on + strandat 3202.421 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
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3,200,156 - +2.2
3,200,156 - +0.6
3,200,183 + -0.7
3,200,183 + -0.6
3,200,183 + +0.3
3,200,183 + +0.4
3,200,184 - -0.3
3,200,184 - +0.1
3,200,184 - -0.2
3,200,229 + +0.7
3,200,229 + +0.8
3,201,060 + -0.9
3,201,060 + +0.0
3,201,060 + -0.1
3,201,060 + +1.6
3,201,061 - -1.0
3,201,123 - +0.4
3,201,155 + -0.5
3,201,155 + +0.5
3,201,318 + A4249_RS15845 0.31 +0.3
3,201,612 + A4249_RS15845 0.88 +1.1
3,201,612 + A4249_RS15845 0.88 -0.3
3,201,613 - A4249_RS15845 0.88 -0.0
3,201,613 - A4249_RS15845 0.88 -0.8
3,201,613 - A4249_RS15845 0.88 -0.7
3,201,613 - A4249_RS15845 0.88 -0.5
3,201,613 - A4249_RS15845 0.88 -0.3
3,201,613 - A4249_RS15845 0.88 +0.9
3,201,613 - A4249_RS15845 0.88 +0.7
3,201,654 + -0.4
3,201,654 + -0.5
3,201,654 + -0.4
3,201,654 + -0.1
3,201,654 + +0.7
3,201,654 + -0.8
3,201,654 + +0.1
3,201,654 + -0.6
3,201,655 - -1.6
3,201,655 - +0.8
3,201,655 - +0.2
3,201,655 - -0.5
3,201,655 - +0.6
3,201,655 - -0.4
3,201,655 - -0.3
3,201,655 - +0.6
3,201,655 - +0.4
3,201,657 - +0.5
3,201,763 - -0.7
3,202,117 + A4249_RS15850 0.53 +0.4
3,202,117 + A4249_RS15850 0.53 -0.6
3,202,118 - A4249_RS15850 0.53 -0.6
3,202,373 + A4249_RS15850 0.89 +0.4
3,202,374 - A4249_RS15850 0.90 +0.3
3,202,374 - A4249_RS15850 0.90 +2.0
3,202,374 - A4249_RS15850 0.90 -0.3
3,202,420 + +0.7
3,202,420 + -1.1
3,202,420 + -0.5
3,202,420 + -0.7
3,202,421 - +0.7

Or see this region's nucleotide sequence