Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS12650 and A4249_RS12655 overlap by 4 nucleotides A4249_RS12655 and A4249_RS12660 are separated by 47 nucleotides A4249_RS12660 and A4249_RS12665 overlap by 4 nucleotides
A4249_RS12650: A4249_RS12650 - LLM class flavin-dependent oxidoreductase, at 2,537,889 to 2,538,893
_RS12650
A4249_RS12655: A4249_RS12655 - alpha/beta hydrolase, at 2,538,890 to 2,539,861
_RS12655
A4249_RS12660: A4249_RS12660 - aldo/keto reductase, at 2,539,909 to 2,540,745
_RS12660
A4249_RS12665: A4249_RS12665 - HIT family protein, at 2,540,742 to 2,541,140
_RS12665
Position (kb)
2538
2539
2540 Strain fitness (log2 ratio)
-1
0
1
2 at 2537.997 kb on + strand, within A4249_RS12650 at 2537.997 kb on + strand, within A4249_RS12650 at 2537.997 kb on + strand, within A4249_RS12650 at 2537.997 kb on + strand, within A4249_RS12650 at 2537.998 kb on - strand, within A4249_RS12650 at 2538.029 kb on + strand, within A4249_RS12650 at 2538.030 kb on - strand, within A4249_RS12650 at 2538.030 kb on - strand, within A4249_RS12650 at 2538.030 kb on - strand, within A4249_RS12650 at 2538.030 kb on - strand, within A4249_RS12650 at 2538.030 kb on - strand, within A4249_RS12650 at 2538.030 kb on - strand, within A4249_RS12650 at 2538.255 kb on + strand, within A4249_RS12650 at 2538.255 kb on + strand, within A4249_RS12650 at 2538.255 kb on + strand, within A4249_RS12650 at 2538.256 kb on - strand, within A4249_RS12650 at 2538.432 kb on + strand, within A4249_RS12650 at 2538.486 kb on + strand, within A4249_RS12650 at 2538.487 kb on - strand, within A4249_RS12650 at 2538.487 kb on - strand, within A4249_RS12650 at 2538.717 kb on + strand, within A4249_RS12650 at 2538.717 kb on + strand, within A4249_RS12650 at 2538.717 kb on + strand, within A4249_RS12650 at 2538.718 kb on - strand, within A4249_RS12650 at 2538.718 kb on - strand, within A4249_RS12650 at 2538.718 kb on - strand, within A4249_RS12650 at 2538.891 kb on + strand at 2538.891 kb on + strand at 2538.892 kb on - strand at 2539.036 kb on - strand, within A4249_RS12655 at 2539.188 kb on + strand, within A4249_RS12655 at 2539.188 kb on + strand, within A4249_RS12655 at 2539.188 kb on + strand, within A4249_RS12655 at 2539.189 kb on - strand, within A4249_RS12655 at 2539.189 kb on - strand, within A4249_RS12655 at 2539.189 kb on - strand, within A4249_RS12655 at 2539.189 kb on - strand, within A4249_RS12655 at 2539.189 kb on - strand, within A4249_RS12655 at 2539.189 kb on - strand, within A4249_RS12655 at 2539.314 kb on + strand, within A4249_RS12655 at 2539.314 kb on + strand, within A4249_RS12655 at 2539.315 kb on - strand, within A4249_RS12655 at 2539.315 kb on - strand, within A4249_RS12655 at 2539.320 kb on + strand, within A4249_RS12655 at 2539.320 kb on + strand, within A4249_RS12655 at 2539.320 kb on + strand, within A4249_RS12655 at 2539.321 kb on - strand, within A4249_RS12655 at 2539.321 kb on - strand, within A4249_RS12655 at 2539.321 kb on - strand, within A4249_RS12655 at 2539.321 kb on - strand, within A4249_RS12655 at 2539.398 kb on + strand, within A4249_RS12655 at 2539.398 kb on + strand, within A4249_RS12655 at 2539.398 kb on + strand, within A4249_RS12655 at 2539.398 kb on + strand, within A4249_RS12655 at 2539.399 kb on - strand, within A4249_RS12655 at 2539.399 kb on - strand, within A4249_RS12655 at 2539.399 kb on - strand, within A4249_RS12655 at 2539.399 kb on - strand, within A4249_RS12655 at 2539.399 kb on - strand, within A4249_RS12655 at 2539.399 kb on - strand, within A4249_RS12655 at 2539.399 kb on - strand, within A4249_RS12655 at 2539.399 kb on - strand, within A4249_RS12655 at 2539.638 kb on + strand, within A4249_RS12655 at 2539.638 kb on + strand, within A4249_RS12655 at 2539.639 kb on - strand, within A4249_RS12655 at 2539.639 kb on - strand, within A4249_RS12655 at 2539.675 kb on - strand, within A4249_RS12655 at 2539.675 kb on - strand, within A4249_RS12655 at 2539.704 kb on + strand, within A4249_RS12655 at 2539.704 kb on + strand, within A4249_RS12655 at 2539.704 kb on + strand, within A4249_RS12655 at 2539.705 kb on - strand, within A4249_RS12655 at 2539.705 kb on - strand, within A4249_RS12655 at 2539.705 kb on - strand, within A4249_RS12655 at 2539.846 kb on + strand at 2539.846 kb on + strand at 2539.846 kb on + strand at 2539.847 kb on - strand at 2539.847 kb on - strand at 2539.847 kb on - strand at 2539.939 kb on - strand at 2540.068 kb on + strand, within A4249_RS12660 at 2540.069 kb on - strand, within A4249_RS12660 at 2540.233 kb on + strand, within A4249_RS12660 at 2540.233 kb on + strand, within A4249_RS12660 at 2540.233 kb on + strand, within A4249_RS12660 at 2540.233 kb on + strand, within A4249_RS12660 at 2540.233 kb on + strand, within A4249_RS12660 at 2540.234 kb on - strand, within A4249_RS12660 at 2540.234 kb on - strand, within A4249_RS12660 at 2540.234 kb on - strand, within A4249_RS12660 at 2540.234 kb on - strand, within A4249_RS12660 at 2540.234 kb on - strand, within A4249_RS12660 at 2540.234 kb on - strand, within A4249_RS12660 at 2540.234 kb on - strand, within A4249_RS12660 at 2540.237 kb on + strand, within A4249_RS12660 at 2540.237 kb on + strand, within A4249_RS12660 at 2540.237 kb on + strand, within A4249_RS12660 at 2540.238 kb on - strand, within A4249_RS12660 at 2540.238 kb on - strand, within A4249_RS12660 at 2540.258 kb on + strand, within A4249_RS12660 at 2540.258 kb on + strand, within A4249_RS12660 at 2540.258 kb on + strand, within A4249_RS12660 at 2540.258 kb on + strand, within A4249_RS12660 at 2540.259 kb on - strand, within A4249_RS12660 at 2540.259 kb on - strand, within A4249_RS12660 at 2540.259 kb on - strand, within A4249_RS12660 at 2540.259 kb on - strand, within A4249_RS12660 at 2540.264 kb on + strand, within A4249_RS12660 at 2540.264 kb on + strand, within A4249_RS12660 at 2540.264 kb on + strand, within A4249_RS12660 at 2540.264 kb on + strand, within A4249_RS12660 at 2540.264 kb on + strand, within A4249_RS12660 at 2540.264 kb on + strand, within A4249_RS12660 at 2540.264 kb on + strand, within A4249_RS12660 at 2540.264 kb on + strand, within A4249_RS12660 at 2540.265 kb on - strand, within A4249_RS12660 at 2540.265 kb on - strand, within A4249_RS12660 at 2540.407 kb on + strand, within A4249_RS12660 at 2540.407 kb on + strand, within A4249_RS12660 at 2540.407 kb on + strand, within A4249_RS12660 at 2540.407 kb on + strand, within A4249_RS12660 at 2540.407 kb on + strand, within A4249_RS12660 at 2540.408 kb on - strand, within A4249_RS12660 at 2540.482 kb on + strand, within A4249_RS12660 at 2540.483 kb on - strand, within A4249_RS12660 at 2540.483 kb on - strand, within A4249_RS12660 at 2540.483 kb on - strand, within A4249_RS12660 at 2540.743 kb on + strand at 2540.743 kb on + strand at 2540.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C) remove 2,537,997 + A4249_RS12650 0.11 +0.1 2,537,997 + A4249_RS12650 0.11 -1.3 2,537,997 + A4249_RS12650 0.11 +0.2 2,537,997 + A4249_RS12650 0.11 -0.6 2,537,998 - A4249_RS12650 0.11 -1.3 2,538,029 + A4249_RS12650 0.14 +0.3 2,538,030 - A4249_RS12650 0.14 +0.5 2,538,030 - A4249_RS12650 0.14 +0.0 2,538,030 - A4249_RS12650 0.14 -0.9 2,538,030 - A4249_RS12650 0.14 +0.7 2,538,030 - A4249_RS12650 0.14 +0.1 2,538,030 - A4249_RS12650 0.14 -1.1 2,538,255 + A4249_RS12650 0.36 -1.1 2,538,255 + A4249_RS12650 0.36 -0.4 2,538,255 + A4249_RS12650 0.36 -0.3 2,538,256 - A4249_RS12650 0.37 +0.2 2,538,432 + A4249_RS12650 0.54 -0.2 2,538,486 + A4249_RS12650 0.59 -0.8 2,538,487 - A4249_RS12650 0.60 +0.3 2,538,487 - A4249_RS12650 0.60 +0.0 2,538,717 + A4249_RS12650 0.82 -0.4 2,538,717 + A4249_RS12650 0.82 +1.6 2,538,717 + A4249_RS12650 0.82 +0.3 2,538,718 - A4249_RS12650 0.82 +0.3 2,538,718 - A4249_RS12650 0.82 -0.1 2,538,718 - A4249_RS12650 0.82 +0.4 2,538,891 + +0.1 2,538,891 + -0.1 2,538,892 - +0.4 2,539,036 - A4249_RS12655 0.15 -0.2 2,539,188 + A4249_RS12655 0.31 +0.4 2,539,188 + A4249_RS12655 0.31 -0.1 2,539,188 + A4249_RS12655 0.31 -0.2 2,539,189 - A4249_RS12655 0.31 +1.7 2,539,189 - A4249_RS12655 0.31 -0.7 2,539,189 - A4249_RS12655 0.31 -0.3 2,539,189 - A4249_RS12655 0.31 +0.4 2,539,189 - A4249_RS12655 0.31 +0.5 2,539,189 - A4249_RS12655 0.31 -0.4 2,539,314 + A4249_RS12655 0.44 +0.5 2,539,314 + A4249_RS12655 0.44 -0.5 2,539,315 - A4249_RS12655 0.44 -1.0 2,539,315 - A4249_RS12655 0.44 +0.9 2,539,320 + A4249_RS12655 0.44 -0.5 2,539,320 + A4249_RS12655 0.44 +0.3 2,539,320 + A4249_RS12655 0.44 -0.0 2,539,321 - A4249_RS12655 0.44 +0.1 2,539,321 - A4249_RS12655 0.44 -0.3 2,539,321 - A4249_RS12655 0.44 -0.4 2,539,321 - A4249_RS12655 0.44 +1.4 2,539,398 + A4249_RS12655 0.52 +0.6 2,539,398 + A4249_RS12655 0.52 +1.2 2,539,398 + A4249_RS12655 0.52 -0.5 2,539,398 + A4249_RS12655 0.52 +0.5 2,539,399 - A4249_RS12655 0.52 -0.0 2,539,399 - A4249_RS12655 0.52 -0.6 2,539,399 - A4249_RS12655 0.52 +0.3 2,539,399 - A4249_RS12655 0.52 -0.1 2,539,399 - A4249_RS12655 0.52 -0.5 2,539,399 - A4249_RS12655 0.52 -0.9 2,539,399 - A4249_RS12655 0.52 -0.6 2,539,399 - A4249_RS12655 0.52 -0.7 2,539,638 + A4249_RS12655 0.77 -0.3 2,539,638 + A4249_RS12655 0.77 -0.5 2,539,639 - A4249_RS12655 0.77 -1.4 2,539,639 - A4249_RS12655 0.77 +1.4 2,539,675 - A4249_RS12655 0.81 +0.7 2,539,675 - A4249_RS12655 0.81 +0.8 2,539,704 + A4249_RS12655 0.84 -0.1 2,539,704 + A4249_RS12655 0.84 +0.6 2,539,704 + A4249_RS12655 0.84 +0.7 2,539,705 - A4249_RS12655 0.84 +0.8 2,539,705 - A4249_RS12655 0.84 -0.3 2,539,705 - A4249_RS12655 0.84 -1.0 2,539,846 + -0.1 2,539,846 + -0.8 2,539,846 + -0.1 2,539,847 - -0.7 2,539,847 - -0.0 2,539,847 - -0.5 2,539,939 - -0.5 2,540,068 + A4249_RS12660 0.19 +0.9 2,540,069 - A4249_RS12660 0.19 -0.1 2,540,233 + A4249_RS12660 0.39 -0.6 2,540,233 + A4249_RS12660 0.39 +0.8 2,540,233 + A4249_RS12660 0.39 -1.2 2,540,233 + A4249_RS12660 0.39 +0.8 2,540,233 + A4249_RS12660 0.39 -1.4 2,540,234 - A4249_RS12660 0.39 +0.9 2,540,234 - A4249_RS12660 0.39 -0.6 2,540,234 - A4249_RS12660 0.39 +0.1 2,540,234 - A4249_RS12660 0.39 -1.1 2,540,234 - A4249_RS12660 0.39 +0.3 2,540,234 - A4249_RS12660 0.39 +0.2 2,540,234 - A4249_RS12660 0.39 -0.6 2,540,237 + A4249_RS12660 0.39 +0.3 2,540,237 + A4249_RS12660 0.39 -0.4 2,540,237 + A4249_RS12660 0.39 -0.1 2,540,238 - A4249_RS12660 0.39 -1.1 2,540,238 - A4249_RS12660 0.39 -1.5 2,540,258 + A4249_RS12660 0.42 +0.4 2,540,258 + A4249_RS12660 0.42 +0.3 2,540,258 + A4249_RS12660 0.42 -1.0 2,540,258 + A4249_RS12660 0.42 -0.5 2,540,259 - A4249_RS12660 0.42 -1.4 2,540,259 - A4249_RS12660 0.42 +0.1 2,540,259 - A4249_RS12660 0.42 -1.4 2,540,259 - A4249_RS12660 0.42 -1.0 2,540,264 + A4249_RS12660 0.42 +0.9 2,540,264 + A4249_RS12660 0.42 -0.4 2,540,264 + A4249_RS12660 0.42 -0.2 2,540,264 + A4249_RS12660 0.42 +1.1 2,540,264 + A4249_RS12660 0.42 +2.6 2,540,264 + A4249_RS12660 0.42 -0.1 2,540,264 + A4249_RS12660 0.42 +1.3 2,540,264 + A4249_RS12660 0.42 -0.3 2,540,265 - A4249_RS12660 0.43 +0.7 2,540,265 - A4249_RS12660 0.43 -0.9 2,540,407 + A4249_RS12660 0.59 -0.6 2,540,407 + A4249_RS12660 0.59 +0.8 2,540,407 + A4249_RS12660 0.59 -1.7 2,540,407 + A4249_RS12660 0.59 +0.7 2,540,407 + A4249_RS12660 0.59 -0.1 2,540,408 - A4249_RS12660 0.60 +1.0 2,540,482 + A4249_RS12660 0.68 +0.9 2,540,483 - A4249_RS12660 0.69 -0.3 2,540,483 - A4249_RS12660 0.69 +0.3 2,540,483 - A4249_RS12660 0.69 +0.5 2,540,743 + +0.9 2,540,743 + +0.5 2,540,744 - +0.3
Or see this region's nucleotide sequence