Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS11115 and A4249_RS11120 are separated by 84 nucleotides A4249_RS11120 and A4249_RS11125 are separated by 125 nucleotides
A4249_RS11115: A4249_RS11115 - MFS transporter, at 2,236,832 to 2,238,136
_RS11115
A4249_RS11120: A4249_RS11120 - translation initiation factor IF-3, at 2,238,221 to 2,238,742
_RS11120
A4249_RS11125: A4249_RS11125 - glycosyltransferase family 9 protein, at 2,238,868 to 2,239,830
_RS11125
Position (kb)
2238
2239 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2237.366 kb on + strand, within A4249_RS11115 at 2237.374 kb on - strand, within A4249_RS11115 at 2237.428 kb on + strand, within A4249_RS11115 at 2237.429 kb on - strand, within A4249_RS11115 at 2237.429 kb on - strand, within A4249_RS11115 at 2237.430 kb on + strand, within A4249_RS11115 at 2237.430 kb on + strand, within A4249_RS11115 at 2237.430 kb on + strand, within A4249_RS11115 at 2237.430 kb on + strand, within A4249_RS11115 at 2237.430 kb on + strand, within A4249_RS11115 at 2237.430 kb on + strand, within A4249_RS11115 at 2237.430 kb on + strand, within A4249_RS11115 at 2237.430 kb on + strand, within A4249_RS11115 at 2237.430 kb on + strand, within A4249_RS11115 at 2237.430 kb on + strand, within A4249_RS11115 at 2237.430 kb on + strand, within A4249_RS11115 at 2237.430 kb on + strand, within A4249_RS11115 at 2237.431 kb on - strand, within A4249_RS11115 at 2237.431 kb on - strand, within A4249_RS11115 at 2237.431 kb on - strand, within A4249_RS11115 at 2237.431 kb on - strand, within A4249_RS11115 at 2237.431 kb on - strand, within A4249_RS11115 at 2237.431 kb on - strand, within A4249_RS11115 at 2237.431 kb on - strand, within A4249_RS11115 at 2237.431 kb on - strand, within A4249_RS11115 at 2237.431 kb on - strand, within A4249_RS11115 at 2237.431 kb on - strand, within A4249_RS11115 at 2237.613 kb on + strand, within A4249_RS11115 at 2237.748 kb on + strand, within A4249_RS11115 at 2237.748 kb on + strand, within A4249_RS11115 at 2237.748 kb on + strand, within A4249_RS11115 at 2237.748 kb on + strand, within A4249_RS11115 at 2237.748 kb on + strand, within A4249_RS11115 at 2237.748 kb on + strand, within A4249_RS11115 at 2237.748 kb on + strand, within A4249_RS11115 at 2237.748 kb on + strand, within A4249_RS11115 at 2237.748 kb on + strand, within A4249_RS11115 at 2237.748 kb on + strand, within A4249_RS11115 at 2237.749 kb on - strand, within A4249_RS11115 at 2237.749 kb on - strand, within A4249_RS11115 at 2237.749 kb on - strand, within A4249_RS11115 at 2237.749 kb on - strand, within A4249_RS11115 at 2237.749 kb on - strand, within A4249_RS11115 at 2237.767 kb on + strand, within A4249_RS11115 at 2237.767 kb on + strand, within A4249_RS11115 at 2237.767 kb on + strand, within A4249_RS11115 at 2237.767 kb on + strand, within A4249_RS11115 at 2237.767 kb on + strand, within A4249_RS11115 at 2237.768 kb on - strand, within A4249_RS11115 at 2237.768 kb on - strand, within A4249_RS11115 at 2237.768 kb on - strand, within A4249_RS11115 at 2237.768 kb on - strand, within A4249_RS11115 at 2237.844 kb on + strand, within A4249_RS11115 at 2237.845 kb on - strand, within A4249_RS11115 at 2238.088 kb on + strand at 2238.088 kb on + strand at 2238.088 kb on + strand at 2238.088 kb on + strand at 2238.089 kb on - strand at 2238.089 kb on - strand at 2238.089 kb on - strand at 2238.089 kb on - strand at 2238.089 kb on - strand at 2238.089 kb on - strand at 2238.201 kb on + strand at 2238.201 kb on + strand at 2238.201 kb on + strand at 2238.202 kb on - strand at 2238.789 kb on - strand at 2238.789 kb on - strand at 2238.789 kb on - strand at 2238.789 kb on - strand at 2238.846 kb on - strand at 2238.846 kb on - strand at 2238.896 kb on + strand at 2238.896 kb on + strand at 2238.896 kb on + strand at 2238.897 kb on - strand at 2238.897 kb on - strand at 2238.897 kb on - strand at 2238.897 kb on - strand at 2238.897 kb on - strand at 2238.897 kb on - strand at 2238.943 kb on + strand at 2238.944 kb on - strand at 2238.944 kb on - strand at 2238.944 kb on - strand at 2238.993 kb on + strand, within A4249_RS11125 at 2238.994 kb on - strand, within A4249_RS11125 at 2238.994 kb on - strand, within A4249_RS11125 at 2238.994 kb on - strand, within A4249_RS11125 at 2239.020 kb on - strand, within A4249_RS11125 at 2239.020 kb on - strand, within A4249_RS11125 at 2239.520 kb on + strand, within A4249_RS11125 at 2239.521 kb on - strand, within A4249_RS11125 at 2239.521 kb on - strand, within A4249_RS11125 at 2239.550 kb on + strand, within A4249_RS11125 at 2239.550 kb on + strand, within A4249_RS11125 at 2239.550 kb on + strand, within A4249_RS11125 at 2239.551 kb on - strand, within A4249_RS11125 at 2239.551 kb on - strand, within A4249_RS11125 at 2239.551 kb on - strand, within A4249_RS11125
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C) remove 2,237,366 + A4249_RS11115 0.41 -0.5 2,237,374 - A4249_RS11115 0.42 -1.0 2,237,428 + A4249_RS11115 0.46 +0.0 2,237,429 - A4249_RS11115 0.46 -0.7 2,237,429 - A4249_RS11115 0.46 -0.4 2,237,430 + A4249_RS11115 0.46 -0.8 2,237,430 + A4249_RS11115 0.46 -1.5 2,237,430 + A4249_RS11115 0.46 -0.5 2,237,430 + A4249_RS11115 0.46 -0.1 2,237,430 + A4249_RS11115 0.46 +0.6 2,237,430 + A4249_RS11115 0.46 +0.7 2,237,430 + A4249_RS11115 0.46 -0.5 2,237,430 + A4249_RS11115 0.46 -0.9 2,237,430 + A4249_RS11115 0.46 +0.2 2,237,430 + A4249_RS11115 0.46 -1.9 2,237,430 + A4249_RS11115 0.46 +0.5 2,237,430 + A4249_RS11115 0.46 -0.2 2,237,431 - A4249_RS11115 0.46 -0.2 2,237,431 - A4249_RS11115 0.46 -0.3 2,237,431 - A4249_RS11115 0.46 -0.7 2,237,431 - A4249_RS11115 0.46 +1.4 2,237,431 - A4249_RS11115 0.46 +0.3 2,237,431 - A4249_RS11115 0.46 +1.0 2,237,431 - A4249_RS11115 0.46 -0.3 2,237,431 - A4249_RS11115 0.46 +0.5 2,237,431 - A4249_RS11115 0.46 -0.4 2,237,431 - A4249_RS11115 0.46 -1.5 2,237,613 + A4249_RS11115 0.60 -0.1 2,237,748 + A4249_RS11115 0.70 -1.0 2,237,748 + A4249_RS11115 0.70 -0.4 2,237,748 + A4249_RS11115 0.70 +0.5 2,237,748 + A4249_RS11115 0.70 +0.3 2,237,748 + A4249_RS11115 0.70 +0.1 2,237,748 + A4249_RS11115 0.70 +0.5 2,237,748 + A4249_RS11115 0.70 +0.2 2,237,748 + A4249_RS11115 0.70 -0.2 2,237,748 + A4249_RS11115 0.70 -0.2 2,237,748 + A4249_RS11115 0.70 +1.3 2,237,749 - A4249_RS11115 0.70 +0.4 2,237,749 - A4249_RS11115 0.70 -1.9 2,237,749 - A4249_RS11115 0.70 +0.1 2,237,749 - A4249_RS11115 0.70 -0.3 2,237,749 - A4249_RS11115 0.70 -0.1 2,237,767 + A4249_RS11115 0.72 +0.8 2,237,767 + A4249_RS11115 0.72 -0.6 2,237,767 + A4249_RS11115 0.72 -0.6 2,237,767 + A4249_RS11115 0.72 -0.4 2,237,767 + A4249_RS11115 0.72 +0.0 2,237,768 - A4249_RS11115 0.72 +1.2 2,237,768 - A4249_RS11115 0.72 -0.5 2,237,768 - A4249_RS11115 0.72 +0.9 2,237,768 - A4249_RS11115 0.72 -0.6 2,237,844 + A4249_RS11115 0.78 -0.3 2,237,845 - A4249_RS11115 0.78 -0.4 2,238,088 + +1.2 2,238,088 + +0.2 2,238,088 + -0.5 2,238,088 + -1.0 2,238,089 - +0.1 2,238,089 - +0.8 2,238,089 - +0.3 2,238,089 - +0.3 2,238,089 - -0.4 2,238,089 - +0.3 2,238,201 + -0.5 2,238,201 + -1.0 2,238,201 + -1.0 2,238,202 - -0.0 2,238,789 - -0.2 2,238,789 - -0.9 2,238,789 - -0.4 2,238,789 - -0.9 2,238,846 - -0.3 2,238,846 - +0.9 2,238,896 + +1.3 2,238,896 + +0.2 2,238,896 + +0.3 2,238,897 - +0.3 2,238,897 - +0.3 2,238,897 - -0.1 2,238,897 - -0.8 2,238,897 - +0.8 2,238,897 - -0.1 2,238,943 + -1.9 2,238,944 - -2.0 2,238,944 - -1.4 2,238,944 - -2.0 2,238,993 + A4249_RS11125 0.13 -1.3 2,238,994 - A4249_RS11125 0.13 -0.0 2,238,994 - A4249_RS11125 0.13 -0.8 2,238,994 - A4249_RS11125 0.13 -1.7 2,239,020 - A4249_RS11125 0.16 -1.9 2,239,020 - A4249_RS11125 0.16 -3.5 2,239,520 + A4249_RS11125 0.68 -1.6 2,239,521 - A4249_RS11125 0.68 -1.6 2,239,521 - A4249_RS11125 0.68 -1.7 2,239,550 + A4249_RS11125 0.71 -1.8 2,239,550 + A4249_RS11125 0.71 -2.2 2,239,550 + A4249_RS11125 0.71 -1.7 2,239,551 - A4249_RS11125 0.71 -1.9 2,239,551 - A4249_RS11125 0.71 -1.6 2,239,551 - A4249_RS11125 0.71 -0.7
Or see this region's nucleotide sequence