Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS08680 and A4249_RS08685 are separated by 55 nucleotides A4249_RS08685 and A4249_RS08690 are separated by 1 nucleotides A4249_RS08690 and A4249_RS08695 overlap by 1 nucleotides
A4249_RS08680: A4249_RS08680 - thioesterase family protein, at 1,745,366 to 1,746,214
_RS08680
A4249_RS08685: A4249_RS08685 - hypothetical protein, at 1,746,270 to 1,746,548
_RS08685
A4249_RS08690: A4249_RS08690 - 6-carboxytetrahydropterin synthase, at 1,746,550 to 1,746,918
_RS08690
A4249_RS08695: A4249_RS08695 - 7-carboxy-7-deazaguanine synthase, at 1,746,918 to 1,747,553
_RS08695
Position (kb)
1746
1747 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1745.398 kb on + strand at 1745.398 kb on + strand at 1745.398 kb on + strand at 1745.399 kb on - strand at 1745.399 kb on - strand at 1745.399 kb on - strand at 1745.582 kb on + strand, within A4249_RS08680 at 1745.582 kb on + strand, within A4249_RS08680 at 1745.582 kb on + strand, within A4249_RS08680 at 1745.582 kb on + strand, within A4249_RS08680 at 1745.582 kb on + strand, within A4249_RS08680 at 1745.583 kb on - strand, within A4249_RS08680 at 1745.583 kb on - strand, within A4249_RS08680 at 1745.583 kb on - strand, within A4249_RS08680 at 1745.583 kb on - strand, within A4249_RS08680 at 1745.583 kb on - strand, within A4249_RS08680 at 1745.583 kb on - strand, within A4249_RS08680 at 1745.657 kb on + strand, within A4249_RS08680 at 1745.657 kb on + strand, within A4249_RS08680 at 1745.657 kb on + strand, within A4249_RS08680 at 1745.657 kb on + strand, within A4249_RS08680 at 1745.658 kb on - strand, within A4249_RS08680 at 1745.658 kb on - strand, within A4249_RS08680 at 1745.658 kb on - strand, within A4249_RS08680 at 1745.714 kb on + strand, within A4249_RS08680 at 1745.714 kb on + strand, within A4249_RS08680 at 1745.714 kb on + strand, within A4249_RS08680 at 1745.714 kb on + strand, within A4249_RS08680 at 1745.714 kb on + strand, within A4249_RS08680 at 1745.715 kb on - strand, within A4249_RS08680 at 1745.799 kb on + strand, within A4249_RS08680 at 1745.799 kb on + strand, within A4249_RS08680 at 1745.799 kb on + strand, within A4249_RS08680 at 1745.800 kb on - strand, within A4249_RS08680 at 1745.800 kb on - strand, within A4249_RS08680 at 1745.800 kb on - strand, within A4249_RS08680 at 1745.884 kb on + strand, within A4249_RS08680 at 1745.884 kb on + strand, within A4249_RS08680 at 1745.884 kb on + strand, within A4249_RS08680 at 1745.884 kb on + strand, within A4249_RS08680 at 1745.885 kb on - strand, within A4249_RS08680 at 1745.885 kb on - strand, within A4249_RS08680 at 1745.954 kb on + strand, within A4249_RS08680 at 1745.954 kb on + strand, within A4249_RS08680 at 1745.955 kb on - strand, within A4249_RS08680 at 1745.955 kb on - strand, within A4249_RS08680 at 1745.955 kb on - strand, within A4249_RS08680 at 1745.955 kb on - strand, within A4249_RS08680 at 1745.955 kb on - strand, within A4249_RS08680 at 1745.973 kb on - strand, within A4249_RS08680 at 1745.973 kb on - strand, within A4249_RS08680 at 1746.246 kb on - strand at 1746.492 kb on + strand, within A4249_RS08685 at 1746.493 kb on - strand, within A4249_RS08685 at 1746.493 kb on - strand, within A4249_RS08685 at 1746.546 kb on + strand at 1746.546 kb on + strand at 1746.560 kb on - strand at 1746.839 kb on + strand, within A4249_RS08690 at 1746.839 kb on + strand, within A4249_RS08690 at 1746.920 kb on - strand at 1746.934 kb on + strand at 1746.935 kb on - strand at 1746.935 kb on - strand at 1746.935 kb on - strand at 1746.935 kb on - strand at 1746.982 kb on + strand, within A4249_RS08695 at 1746.983 kb on - strand, within A4249_RS08695 at 1747.546 kb on + strand at 1747.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C) remove 1,745,398 + -0.1 1,745,398 + +0.5 1,745,398 + -0.5 1,745,399 - +0.7 1,745,399 - +0.4 1,745,399 - -0.3 1,745,582 + A4249_RS08680 0.25 +0.8 1,745,582 + A4249_RS08680 0.25 -0.5 1,745,582 + A4249_RS08680 0.25 +0.5 1,745,582 + A4249_RS08680 0.25 +0.1 1,745,582 + A4249_RS08680 0.25 -1.7 1,745,583 - A4249_RS08680 0.26 -0.4 1,745,583 - A4249_RS08680 0.26 -0.2 1,745,583 - A4249_RS08680 0.26 -0.2 1,745,583 - A4249_RS08680 0.26 +0.2 1,745,583 - A4249_RS08680 0.26 +0.2 1,745,583 - A4249_RS08680 0.26 -0.0 1,745,657 + A4249_RS08680 0.34 +0.6 1,745,657 + A4249_RS08680 0.34 -0.6 1,745,657 + A4249_RS08680 0.34 +0.2 1,745,657 + A4249_RS08680 0.34 -0.3 1,745,658 - A4249_RS08680 0.34 +0.1 1,745,658 - A4249_RS08680 0.34 +0.2 1,745,658 - A4249_RS08680 0.34 -0.0 1,745,714 + A4249_RS08680 0.41 -1.0 1,745,714 + A4249_RS08680 0.41 -0.3 1,745,714 + A4249_RS08680 0.41 +0.4 1,745,714 + A4249_RS08680 0.41 -0.5 1,745,714 + A4249_RS08680 0.41 +0.3 1,745,715 - A4249_RS08680 0.41 +0.2 1,745,799 + A4249_RS08680 0.51 -0.3 1,745,799 + A4249_RS08680 0.51 +0.9 1,745,799 + A4249_RS08680 0.51 +1.2 1,745,800 - A4249_RS08680 0.51 -1.7 1,745,800 - A4249_RS08680 0.51 -0.3 1,745,800 - A4249_RS08680 0.51 -0.2 1,745,884 + A4249_RS08680 0.61 -0.7 1,745,884 + A4249_RS08680 0.61 +0.9 1,745,884 + A4249_RS08680 0.61 -0.3 1,745,884 + A4249_RS08680 0.61 -0.2 1,745,885 - A4249_RS08680 0.61 +0.4 1,745,885 - A4249_RS08680 0.61 +0.1 1,745,954 + A4249_RS08680 0.69 +0.1 1,745,954 + A4249_RS08680 0.69 +0.5 1,745,955 - A4249_RS08680 0.69 -0.2 1,745,955 - A4249_RS08680 0.69 -0.7 1,745,955 - A4249_RS08680 0.69 -0.9 1,745,955 - A4249_RS08680 0.69 +0.2 1,745,955 - A4249_RS08680 0.69 -0.3 1,745,973 - A4249_RS08680 0.71 +1.3 1,745,973 - A4249_RS08680 0.71 +0.8 1,746,246 - -0.0 1,746,492 + A4249_RS08685 0.80 -0.9 1,746,493 - A4249_RS08685 0.80 -0.5 1,746,493 - A4249_RS08685 0.80 -0.2 1,746,546 + -0.2 1,746,546 + -0.1 1,746,560 - -0.4 1,746,839 + A4249_RS08690 0.78 +1.9 1,746,839 + A4249_RS08690 0.78 -0.1 1,746,920 - -1.9 1,746,934 + -0.1 1,746,935 - -0.1 1,746,935 - +0.1 1,746,935 - +0.3 1,746,935 - +0.5 1,746,982 + A4249_RS08695 0.10 +0.5 1,746,983 - A4249_RS08695 0.10 +0.1 1,747,546 + +1.3 1,747,547 - +0.1
Or see this region's nucleotide sequence