Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08685

Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08680 and A4249_RS08685 are separated by 55 nucleotidesA4249_RS08685 and A4249_RS08690 are separated by 1 nucleotidesA4249_RS08690 and A4249_RS08695 overlap by 1 nucleotides A4249_RS08680: A4249_RS08680 - thioesterase family protein, at 1,745,366 to 1,746,214 _RS08680 A4249_RS08685: A4249_RS08685 - hypothetical protein, at 1,746,270 to 1,746,548 _RS08685 A4249_RS08690: A4249_RS08690 - 6-carboxytetrahydropterin synthase, at 1,746,550 to 1,746,918 _RS08690 A4249_RS08695: A4249_RS08695 - 7-carboxy-7-deazaguanine synthase, at 1,746,918 to 1,747,553 _RS08695 Position (kb) 1746 1747Strain fitness (log2 ratio) -2 -1 0 1 2at 1745.398 kb on + strandat 1745.398 kb on + strandat 1745.398 kb on + strandat 1745.399 kb on - strandat 1745.399 kb on - strandat 1745.399 kb on - strandat 1745.582 kb on + strand, within A4249_RS08680at 1745.582 kb on + strand, within A4249_RS08680at 1745.582 kb on + strand, within A4249_RS08680at 1745.582 kb on + strand, within A4249_RS08680at 1745.582 kb on + strand, within A4249_RS08680at 1745.583 kb on - strand, within A4249_RS08680at 1745.583 kb on - strand, within A4249_RS08680at 1745.583 kb on - strand, within A4249_RS08680at 1745.583 kb on - strand, within A4249_RS08680at 1745.583 kb on - strand, within A4249_RS08680at 1745.583 kb on - strand, within A4249_RS08680at 1745.657 kb on + strand, within A4249_RS08680at 1745.657 kb on + strand, within A4249_RS08680at 1745.657 kb on + strand, within A4249_RS08680at 1745.657 kb on + strand, within A4249_RS08680at 1745.658 kb on - strand, within A4249_RS08680at 1745.658 kb on - strand, within A4249_RS08680at 1745.658 kb on - strand, within A4249_RS08680at 1745.714 kb on + strand, within A4249_RS08680at 1745.714 kb on + strand, within A4249_RS08680at 1745.714 kb on + strand, within A4249_RS08680at 1745.714 kb on + strand, within A4249_RS08680at 1745.714 kb on + strand, within A4249_RS08680at 1745.715 kb on - strand, within A4249_RS08680at 1745.799 kb on + strand, within A4249_RS08680at 1745.799 kb on + strand, within A4249_RS08680at 1745.799 kb on + strand, within A4249_RS08680at 1745.800 kb on - strand, within A4249_RS08680at 1745.800 kb on - strand, within A4249_RS08680at 1745.800 kb on - strand, within A4249_RS08680at 1745.884 kb on + strand, within A4249_RS08680at 1745.884 kb on + strand, within A4249_RS08680at 1745.884 kb on + strand, within A4249_RS08680at 1745.884 kb on + strand, within A4249_RS08680at 1745.885 kb on - strand, within A4249_RS08680at 1745.885 kb on - strand, within A4249_RS08680at 1745.954 kb on + strand, within A4249_RS08680at 1745.954 kb on + strand, within A4249_RS08680at 1745.955 kb on - strand, within A4249_RS08680at 1745.955 kb on - strand, within A4249_RS08680at 1745.955 kb on - strand, within A4249_RS08680at 1745.955 kb on - strand, within A4249_RS08680at 1745.955 kb on - strand, within A4249_RS08680at 1745.973 kb on - strand, within A4249_RS08680at 1745.973 kb on - strand, within A4249_RS08680at 1746.246 kb on - strandat 1746.492 kb on + strand, within A4249_RS08685at 1746.493 kb on - strand, within A4249_RS08685at 1746.493 kb on - strand, within A4249_RS08685at 1746.546 kb on + strandat 1746.546 kb on + strandat 1746.560 kb on - strandat 1746.839 kb on + strand, within A4249_RS08690at 1746.839 kb on + strand, within A4249_RS08690at 1746.920 kb on - strandat 1746.934 kb on + strandat 1746.935 kb on - strandat 1746.935 kb on - strandat 1746.935 kb on - strandat 1746.935 kb on - strandat 1746.982 kb on + strand, within A4249_RS08695at 1746.983 kb on - strand, within A4249_RS08695at 1747.546 kb on + strandat 1747.547 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
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1,745,398 + -0.1
1,745,398 + +0.5
1,745,398 + -0.5
1,745,399 - +0.7
1,745,399 - +0.4
1,745,399 - -0.3
1,745,582 + A4249_RS08680 0.25 +0.8
1,745,582 + A4249_RS08680 0.25 -0.5
1,745,582 + A4249_RS08680 0.25 +0.5
1,745,582 + A4249_RS08680 0.25 +0.1
1,745,582 + A4249_RS08680 0.25 -1.7
1,745,583 - A4249_RS08680 0.26 -0.4
1,745,583 - A4249_RS08680 0.26 -0.2
1,745,583 - A4249_RS08680 0.26 -0.2
1,745,583 - A4249_RS08680 0.26 +0.2
1,745,583 - A4249_RS08680 0.26 +0.2
1,745,583 - A4249_RS08680 0.26 -0.0
1,745,657 + A4249_RS08680 0.34 +0.6
1,745,657 + A4249_RS08680 0.34 -0.6
1,745,657 + A4249_RS08680 0.34 +0.2
1,745,657 + A4249_RS08680 0.34 -0.3
1,745,658 - A4249_RS08680 0.34 +0.1
1,745,658 - A4249_RS08680 0.34 +0.2
1,745,658 - A4249_RS08680 0.34 -0.0
1,745,714 + A4249_RS08680 0.41 -1.0
1,745,714 + A4249_RS08680 0.41 -0.3
1,745,714 + A4249_RS08680 0.41 +0.4
1,745,714 + A4249_RS08680 0.41 -0.5
1,745,714 + A4249_RS08680 0.41 +0.3
1,745,715 - A4249_RS08680 0.41 +0.2
1,745,799 + A4249_RS08680 0.51 -0.3
1,745,799 + A4249_RS08680 0.51 +0.9
1,745,799 + A4249_RS08680 0.51 +1.2
1,745,800 - A4249_RS08680 0.51 -1.7
1,745,800 - A4249_RS08680 0.51 -0.3
1,745,800 - A4249_RS08680 0.51 -0.2
1,745,884 + A4249_RS08680 0.61 -0.7
1,745,884 + A4249_RS08680 0.61 +0.9
1,745,884 + A4249_RS08680 0.61 -0.3
1,745,884 + A4249_RS08680 0.61 -0.2
1,745,885 - A4249_RS08680 0.61 +0.4
1,745,885 - A4249_RS08680 0.61 +0.1
1,745,954 + A4249_RS08680 0.69 +0.1
1,745,954 + A4249_RS08680 0.69 +0.5
1,745,955 - A4249_RS08680 0.69 -0.2
1,745,955 - A4249_RS08680 0.69 -0.7
1,745,955 - A4249_RS08680 0.69 -0.9
1,745,955 - A4249_RS08680 0.69 +0.2
1,745,955 - A4249_RS08680 0.69 -0.3
1,745,973 - A4249_RS08680 0.71 +1.3
1,745,973 - A4249_RS08680 0.71 +0.8
1,746,246 - -0.0
1,746,492 + A4249_RS08685 0.80 -0.9
1,746,493 - A4249_RS08685 0.80 -0.5
1,746,493 - A4249_RS08685 0.80 -0.2
1,746,546 + -0.2
1,746,546 + -0.1
1,746,560 - -0.4
1,746,839 + A4249_RS08690 0.78 +1.9
1,746,839 + A4249_RS08690 0.78 -0.1
1,746,920 - -1.9
1,746,934 + -0.1
1,746,935 - -0.1
1,746,935 - +0.1
1,746,935 - +0.3
1,746,935 - +0.5
1,746,982 + A4249_RS08695 0.10 +0.5
1,746,983 - A4249_RS08695 0.10 +0.1
1,747,546 + +1.3
1,747,547 - +0.1

Or see this region's nucleotide sequence