Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS08035 and A4249_RS08040 are separated by 57 nucleotides A4249_RS08040 and A4249_RS08045 are separated by 81 nucleotides A4249_RS08045 and A4249_RS08050 are separated by 250 nucleotides
A4249_RS08035: A4249_RS08035 - TSCPD domain-containing protein, at 1,606,055 to 1,608,592
_RS08035
A4249_RS08040: A4249_RS08040 - pentapeptide repeat-containing protein, at 1,608,650 to 1,609,141
_RS08040
A4249_RS08045: A4249_RS08045 - pentapeptide repeat-containing protein, at 1,609,223 to 1,610,110
_RS08045
A4249_RS08050: A4249_RS08050 - elongation factor Tu, at 1,610,361 to 1,611,551
_RS08050
Position (kb)
1609
1610
1611 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1608.245 kb on + strand, within A4249_RS08035 at 1608.245 kb on + strand, within A4249_RS08035 at 1608.245 kb on + strand, within A4249_RS08035 at 1608.245 kb on + strand, within A4249_RS08035 at 1608.245 kb on + strand, within A4249_RS08035 at 1608.245 kb on + strand, within A4249_RS08035 at 1608.245 kb on + strand, within A4249_RS08035 at 1608.245 kb on + strand, within A4249_RS08035 at 1608.246 kb on - strand, within A4249_RS08035 at 1608.246 kb on - strand, within A4249_RS08035 at 1608.246 kb on - strand, within A4249_RS08035 at 1608.246 kb on - strand, within A4249_RS08035 at 1608.246 kb on - strand, within A4249_RS08035 at 1608.246 kb on - strand, within A4249_RS08035 at 1608.246 kb on - strand, within A4249_RS08035 at 1608.272 kb on + strand, within A4249_RS08035 at 1608.272 kb on + strand, within A4249_RS08035 at 1608.273 kb on - strand, within A4249_RS08035 at 1608.273 kb on - strand, within A4249_RS08035 at 1608.355 kb on + strand at 1608.591 kb on - strand at 1608.591 kb on - strand at 1608.609 kb on + strand at 1608.610 kb on - strand at 1608.912 kb on - strand, within A4249_RS08040 at 1608.912 kb on - strand, within A4249_RS08040 at 1608.980 kb on + strand, within A4249_RS08040 at 1608.980 kb on + strand, within A4249_RS08040 at 1608.981 kb on - strand, within A4249_RS08040 at 1609.188 kb on + strand at 1610.035 kb on + strand at 1610.036 kb on - strand at 1610.036 kb on - strand at 1610.108 kb on + strand at 1610.108 kb on + strand at 1610.109 kb on - strand at 1610.109 kb on - strand at 1610.109 kb on - strand at 1610.109 kb on - strand at 1610.204 kb on + strand at 1610.222 kb on + strand at 1610.222 kb on + strand at 1610.222 kb on + strand at 1610.223 kb on - strand at 1610.223 kb on - strand at 1610.223 kb on - strand at 1610.223 kb on - strand at 1610.223 kb on - strand at 1610.297 kb on + strand at 1610.297 kb on + strand at 1610.298 kb on - strand at 1610.298 kb on - strand at 1610.298 kb on - strand at 1610.302 kb on + strand at 1610.302 kb on + strand at 1610.302 kb on + strand at 1610.302 kb on + strand at 1610.303 kb on - strand at 1610.303 kb on - strand at 1610.303 kb on - strand at 1610.303 kb on - strand at 1610.319 kb on + strand at 1610.319 kb on + strand at 1610.319 kb on + strand at 1610.319 kb on + strand at 1610.320 kb on - strand at 1610.320 kb on - strand at 1610.320 kb on - strand at 1610.363 kb on - strand at 1610.950 kb on + strand, within A4249_RS08050
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C) remove 1,608,245 + A4249_RS08035 0.86 -0.0 1,608,245 + A4249_RS08035 0.86 -0.5 1,608,245 + A4249_RS08035 0.86 +0.2 1,608,245 + A4249_RS08035 0.86 +0.5 1,608,245 + A4249_RS08035 0.86 -0.2 1,608,245 + A4249_RS08035 0.86 +0.6 1,608,245 + A4249_RS08035 0.86 -0.2 1,608,245 + A4249_RS08035 0.86 +0.2 1,608,246 - A4249_RS08035 0.86 +1.6 1,608,246 - A4249_RS08035 0.86 -0.2 1,608,246 - A4249_RS08035 0.86 -1.1 1,608,246 - A4249_RS08035 0.86 +0.9 1,608,246 - A4249_RS08035 0.86 +1.6 1,608,246 - A4249_RS08035 0.86 +0.5 1,608,246 - A4249_RS08035 0.86 -1.5 1,608,272 + A4249_RS08035 0.87 -0.2 1,608,272 + A4249_RS08035 0.87 -0.5 1,608,273 - A4249_RS08035 0.87 +0.1 1,608,273 - A4249_RS08035 0.87 -0.0 1,608,355 + -0.9 1,608,591 - +0.1 1,608,591 - -0.3 1,608,609 + -0.2 1,608,610 - -0.3 1,608,912 - A4249_RS08040 0.53 +1.0 1,608,912 - A4249_RS08040 0.53 -0.3 1,608,980 + A4249_RS08040 0.67 -0.9 1,608,980 + A4249_RS08040 0.67 -0.6 1,608,981 - A4249_RS08040 0.67 -0.3 1,609,188 + -1.5 1,610,035 + -0.3 1,610,036 - +0.4 1,610,036 - -0.3 1,610,108 + +1.1 1,610,108 + +0.2 1,610,109 - -0.0 1,610,109 - +0.2 1,610,109 - -0.5 1,610,109 - -0.8 1,610,204 + -0.9 1,610,222 + -2.2 1,610,222 + -0.3 1,610,222 + +1.3 1,610,223 - +1.0 1,610,223 - +1.6 1,610,223 - -1.0 1,610,223 - -0.3 1,610,223 - -0.4 1,610,297 + -0.4 1,610,297 + +0.5 1,610,298 - +0.9 1,610,298 - +0.1 1,610,298 - +0.7 1,610,302 + +0.3 1,610,302 + +0.9 1,610,302 + +1.4 1,610,302 + +1.0 1,610,303 - -0.1 1,610,303 - -0.2 1,610,303 - +1.0 1,610,303 - +0.5 1,610,319 + -0.7 1,610,319 + +0.3 1,610,319 + +0.7 1,610,319 + -0.0 1,610,320 - -1.4 1,610,320 - -2.0 1,610,320 - -0.5 1,610,363 - +0.3 1,610,950 + A4249_RS08050 0.49 +3.5
Or see this region's nucleotide sequence