Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07425

Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07420 and A4249_RS07425 are separated by 250 nucleotidesA4249_RS07425 and A4249_RS07430 are separated by 93 nucleotidesA4249_RS07430 and A4249_RS07435 overlap by 4 nucleotides A4249_RS07420: A4249_RS07420 - hypothetical protein, at 1,479,640 to 1,480,485 _RS07420 A4249_RS07425: A4249_RS07425 - hypothetical protein, at 1,480,736 to 1,481,689 _RS07425 A4249_RS07430: A4249_RS07430 - hypothetical protein, at 1,481,783 to 1,482,391 _RS07430 A4249_RS07435: A4249_RS07435 - hypothetical protein, at 1,482,388 to 1,484,577 _RS07435 Position (kb) 1480 1481 1482Strain fitness (log2 ratio) -2 -1 0 1 2at 1479.742 kb on + strand, within A4249_RS07420at 1479.742 kb on + strand, within A4249_RS07420at 1479.742 kb on + strand, within A4249_RS07420at 1479.743 kb on - strand, within A4249_RS07420at 1479.743 kb on - strand, within A4249_RS07420at 1479.743 kb on - strand, within A4249_RS07420at 1479.743 kb on - strand, within A4249_RS07420at 1479.743 kb on - strand, within A4249_RS07420at 1479.743 kb on - strand, within A4249_RS07420at 1479.868 kb on + strand, within A4249_RS07420at 1480.008 kb on + strand, within A4249_RS07420at 1480.015 kb on + strand, within A4249_RS07420at 1480.015 kb on + strand, within A4249_RS07420at 1480.015 kb on + strand, within A4249_RS07420at 1480.015 kb on + strand, within A4249_RS07420at 1480.016 kb on - strand, within A4249_RS07420at 1480.016 kb on - strand, within A4249_RS07420at 1480.016 kb on - strand, within A4249_RS07420at 1480.016 kb on - strand, within A4249_RS07420at 1480.016 kb on - strand, within A4249_RS07420at 1480.099 kb on + strand, within A4249_RS07420at 1480.099 kb on + strand, within A4249_RS07420at 1480.099 kb on + strand, within A4249_RS07420at 1480.099 kb on + strand, within A4249_RS07420at 1480.099 kb on + strand, within A4249_RS07420at 1480.099 kb on + strand, within A4249_RS07420at 1480.099 kb on + strand, within A4249_RS07420at 1480.099 kb on + strand, within A4249_RS07420at 1480.099 kb on + strand, within A4249_RS07420at 1480.099 kb on + strand, within A4249_RS07420at 1480.099 kb on + strand, within A4249_RS07420at 1480.100 kb on - strand, within A4249_RS07420at 1480.100 kb on - strand, within A4249_RS07420at 1480.100 kb on - strand, within A4249_RS07420at 1480.100 kb on - strand, within A4249_RS07420at 1480.231 kb on + strand, within A4249_RS07420at 1480.231 kb on + strand, within A4249_RS07420at 1480.231 kb on + strand, within A4249_RS07420at 1480.231 kb on + strand, within A4249_RS07420at 1480.231 kb on + strand, within A4249_RS07420at 1480.231 kb on + strand, within A4249_RS07420at 1480.231 kb on + strand, within A4249_RS07420at 1480.231 kb on + strand, within A4249_RS07420at 1480.231 kb on + strand, within A4249_RS07420at 1480.232 kb on - strand, within A4249_RS07420at 1480.232 kb on - strand, within A4249_RS07420at 1480.232 kb on - strand, within A4249_RS07420at 1480.232 kb on - strand, within A4249_RS07420at 1480.232 kb on - strand, within A4249_RS07420at 1480.232 kb on - strand, within A4249_RS07420at 1480.409 kb on - strandat 1480.409 kb on - strandat 1480.483 kb on + strandat 1480.484 kb on - strandat 1480.484 kb on - strandat 1480.484 kb on - strandat 1480.484 kb on - strandat 1480.494 kb on + strandat 1480.494 kb on + strandat 1480.494 kb on + strandat 1480.495 kb on - strandat 1480.604 kb on + strandat 1480.734 kb on + strandat 1480.735 kb on - strandat 1480.735 kb on - strandat 1480.741 kb on + strandat 1480.838 kb on + strand, within A4249_RS07425at 1480.838 kb on + strand, within A4249_RS07425at 1480.838 kb on + strand, within A4249_RS07425at 1480.838 kb on + strand, within A4249_RS07425at 1480.839 kb on - strand, within A4249_RS07425at 1480.839 kb on - strand, within A4249_RS07425at 1480.839 kb on - strand, within A4249_RS07425at 1480.839 kb on - strand, within A4249_RS07425at 1480.839 kb on - strand, within A4249_RS07425at 1480.901 kb on + strand, within A4249_RS07425at 1481.060 kb on + strand, within A4249_RS07425at 1481.079 kb on - strand, within A4249_RS07425at 1481.297 kb on + strand, within A4249_RS07425at 1481.297 kb on + strand, within A4249_RS07425at 1481.298 kb on - strand, within A4249_RS07425at 1481.323 kb on + strand, within A4249_RS07425at 1481.324 kb on + strand, within A4249_RS07425at 1481.324 kb on + strand, within A4249_RS07425at 1481.324 kb on + strand, within A4249_RS07425at 1481.324 kb on + strand, within A4249_RS07425at 1481.324 kb on + strand, within A4249_RS07425at 1481.324 kb on + strand, within A4249_RS07425at 1481.324 kb on + strand, within A4249_RS07425at 1481.324 kb on + strand, within A4249_RS07425at 1481.324 kb on + strand, within A4249_RS07425at 1481.324 kb on + strand, within A4249_RS07425at 1481.325 kb on - strand, within A4249_RS07425at 1481.325 kb on - strand, within A4249_RS07425at 1481.363 kb on + strand, within A4249_RS07425at 1481.364 kb on - strand, within A4249_RS07425at 1481.364 kb on - strand, within A4249_RS07425at 1481.364 kb on - strand, within A4249_RS07425at 1481.364 kb on - strand, within A4249_RS07425at 1481.490 kb on - strand, within A4249_RS07425at 1481.490 kb on - strand, within A4249_RS07425at 1481.501 kb on + strand, within A4249_RS07425at 1481.621 kb on + strandat 1481.621 kb on + strandat 1481.621 kb on + strandat 1481.622 kb on - strandat 1481.622 kb on - strandat 1481.622 kb on - strandat 1481.622 kb on - strandat 1481.622 kb on - strandat 1481.622 kb on - strandat 1481.687 kb on + strandat 1481.687 kb on + strandat 1481.688 kb on - strandat 1481.951 kb on - strand, within A4249_RS07430at 1481.963 kb on + strand, within A4249_RS07430at 1481.963 kb on + strand, within A4249_RS07430at 1481.963 kb on + strand, within A4249_RS07430at 1481.963 kb on + strand, within A4249_RS07430at 1481.963 kb on + strand, within A4249_RS07430at 1481.963 kb on + strand, within A4249_RS07430at 1481.964 kb on - strand, within A4249_RS07430at 1481.964 kb on - strand, within A4249_RS07430at 1481.964 kb on - strand, within A4249_RS07430at 1481.964 kb on - strand, within A4249_RS07430at 1481.964 kb on - strand, within A4249_RS07430at 1481.964 kb on - strand, within A4249_RS07430at 1481.964 kb on - strand, within A4249_RS07430at 1481.964 kb on - strand, within A4249_RS07430at 1482.152 kb on + strand, within A4249_RS07430at 1482.152 kb on + strand, within A4249_RS07430at 1482.153 kb on - strand, within A4249_RS07430at 1482.153 kb on - strand, within A4249_RS07430at 1482.153 kb on - strand, within A4249_RS07430at 1482.153 kb on - strand, within A4249_RS07430at 1482.158 kb on + strand, within A4249_RS07430at 1482.159 kb on - strand, within A4249_RS07430at 1482.159 kb on - strand, within A4249_RS07430at 1482.227 kb on + strand, within A4249_RS07430at 1482.227 kb on + strand, within A4249_RS07430at 1482.227 kb on + strand, within A4249_RS07430at 1482.227 kb on + strand, within A4249_RS07430at 1482.227 kb on + strand, within A4249_RS07430at 1482.227 kb on + strand, within A4249_RS07430at 1482.228 kb on - strand, within A4249_RS07430at 1482.228 kb on - strand, within A4249_RS07430at 1482.228 kb on - strand, within A4249_RS07430at 1482.228 kb on - strand, within A4249_RS07430at 1482.228 kb on - strand, within A4249_RS07430at 1482.408 kb on + strandat 1482.408 kb on + strandat 1482.498 kb on + strandat 1482.498 kb on + strandat 1482.499 kb on - strandat 1482.499 kb on - strandat 1482.610 kb on + strand, within A4249_RS07435at 1482.610 kb on + strand, within A4249_RS07435at 1482.610 kb on + strand, within A4249_RS07435at 1482.610 kb on + strand, within A4249_RS07435at 1482.610 kb on + strand, within A4249_RS07435at 1482.610 kb on + strand, within A4249_RS07435at 1482.610 kb on + strand, within A4249_RS07435at 1482.610 kb on + strand, within A4249_RS07435at 1482.610 kb on + strand, within A4249_RS07435at 1482.610 kb on + strand, within A4249_RS07435at 1482.610 kb on + strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.611 kb on - strand, within A4249_RS07435at 1482.652 kb on - strand, within A4249_RS07435

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
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1,479,742 + A4249_RS07420 0.12 -0.0
1,479,742 + A4249_RS07420 0.12 -1.9
1,479,742 + A4249_RS07420 0.12 +0.3
1,479,743 - A4249_RS07420 0.12 -0.5
1,479,743 - A4249_RS07420 0.12 -0.5
1,479,743 - A4249_RS07420 0.12 -1.4
1,479,743 - A4249_RS07420 0.12 +0.0
1,479,743 - A4249_RS07420 0.12 -0.6
1,479,743 - A4249_RS07420 0.12 -0.7
1,479,868 + A4249_RS07420 0.27 +1.2
1,480,008 + A4249_RS07420 0.43 -0.1
1,480,015 + A4249_RS07420 0.44 -0.3
1,480,015 + A4249_RS07420 0.44 -0.6
1,480,015 + A4249_RS07420 0.44 -1.3
1,480,015 + A4249_RS07420 0.44 +1.1
1,480,016 - A4249_RS07420 0.44 -0.8
1,480,016 - A4249_RS07420 0.44 +0.5
1,480,016 - A4249_RS07420 0.44 -0.2
1,480,016 - A4249_RS07420 0.44 -0.2
1,480,016 - A4249_RS07420 0.44 -0.1
1,480,099 + A4249_RS07420 0.54 -0.5
1,480,099 + A4249_RS07420 0.54 +1.0
1,480,099 + A4249_RS07420 0.54 +0.2
1,480,099 + A4249_RS07420 0.54 -0.7
1,480,099 + A4249_RS07420 0.54 -0.8
1,480,099 + A4249_RS07420 0.54 +0.1
1,480,099 + A4249_RS07420 0.54 +1.2
1,480,099 + A4249_RS07420 0.54 +2.2
1,480,099 + A4249_RS07420 0.54 +1.3
1,480,099 + A4249_RS07420 0.54 +0.3
1,480,099 + A4249_RS07420 0.54 -0.4
1,480,100 - A4249_RS07420 0.54 -1.3
1,480,100 - A4249_RS07420 0.54 +0.3
1,480,100 - A4249_RS07420 0.54 -0.0
1,480,100 - A4249_RS07420 0.54 -0.6
1,480,231 + A4249_RS07420 0.70 -0.7
1,480,231 + A4249_RS07420 0.70 -1.1
1,480,231 + A4249_RS07420 0.70 -1.2
1,480,231 + A4249_RS07420 0.70 -1.6
1,480,231 + A4249_RS07420 0.70 -0.1
1,480,231 + A4249_RS07420 0.70 -0.4
1,480,231 + A4249_RS07420 0.70 +0.4
1,480,231 + A4249_RS07420 0.70 -0.2
1,480,231 + A4249_RS07420 0.70 -0.9
1,480,232 - A4249_RS07420 0.70 -0.8
1,480,232 - A4249_RS07420 0.70 -0.4
1,480,232 - A4249_RS07420 0.70 -0.2
1,480,232 - A4249_RS07420 0.70 +0.2
1,480,232 - A4249_RS07420 0.70 +0.9
1,480,232 - A4249_RS07420 0.70 -0.1
1,480,409 - -1.8
1,480,409 - -0.1
1,480,483 + +0.2
1,480,484 - -0.2
1,480,484 - -0.4
1,480,484 - -1.3
1,480,484 - -0.0
1,480,494 + -0.4
1,480,494 + -0.6
1,480,494 + -0.3
1,480,495 - -1.7
1,480,604 + +0.0
1,480,734 + +0.7
1,480,735 - -0.2
1,480,735 - -0.1
1,480,741 + +0.5
1,480,838 + A4249_RS07425 0.11 -1.3
1,480,838 + A4249_RS07425 0.11 -1.2
1,480,838 + A4249_RS07425 0.11 -0.6
1,480,838 + A4249_RS07425 0.11 +1.7
1,480,839 - A4249_RS07425 0.11 +0.6
1,480,839 - A4249_RS07425 0.11 -1.1
1,480,839 - A4249_RS07425 0.11 +0.9
1,480,839 - A4249_RS07425 0.11 +0.6
1,480,839 - A4249_RS07425 0.11 +0.5
1,480,901 + A4249_RS07425 0.17 -0.6
1,481,060 + A4249_RS07425 0.34 +0.7
1,481,079 - A4249_RS07425 0.36 -0.4
1,481,297 + A4249_RS07425 0.59 +0.1
1,481,297 + A4249_RS07425 0.59 -0.1
1,481,298 - A4249_RS07425 0.59 -0.8
1,481,323 + A4249_RS07425 0.62 +0.1
1,481,324 + A4249_RS07425 0.62 +0.4
1,481,324 + A4249_RS07425 0.62 -0.8
1,481,324 + A4249_RS07425 0.62 -0.5
1,481,324 + A4249_RS07425 0.62 -2.6
1,481,324 + A4249_RS07425 0.62 -0.5
1,481,324 + A4249_RS07425 0.62 -0.4
1,481,324 + A4249_RS07425 0.62 -0.2
1,481,324 + A4249_RS07425 0.62 +0.2
1,481,324 + A4249_RS07425 0.62 -0.2
1,481,324 + A4249_RS07425 0.62 +0.1
1,481,325 - A4249_RS07425 0.62 -0.7
1,481,325 - A4249_RS07425 0.62 -0.1
1,481,363 + A4249_RS07425 0.66 -1.3
1,481,364 - A4249_RS07425 0.66 +0.5
1,481,364 - A4249_RS07425 0.66 +0.5
1,481,364 - A4249_RS07425 0.66 -0.5
1,481,364 - A4249_RS07425 0.66 +0.4
1,481,490 - A4249_RS07425 0.79 +0.2
1,481,490 - A4249_RS07425 0.79 +0.4
1,481,501 + A4249_RS07425 0.80 -0.8
1,481,621 + -0.0
1,481,621 + -0.2
1,481,621 + -0.3
1,481,622 - -0.2
1,481,622 - +0.3
1,481,622 - +0.4
1,481,622 - +0.4
1,481,622 - +0.2
1,481,622 - +0.8
1,481,687 + +0.3
1,481,687 + +0.1
1,481,688 - +0.6
1,481,951 - A4249_RS07430 0.28 +1.4
1,481,963 + A4249_RS07430 0.30 -0.3
1,481,963 + A4249_RS07430 0.30 +0.6
1,481,963 + A4249_RS07430 0.30 -0.3
1,481,963 + A4249_RS07430 0.30 -0.9
1,481,963 + A4249_RS07430 0.30 +2.3
1,481,963 + A4249_RS07430 0.30 +0.7
1,481,964 - A4249_RS07430 0.30 -1.0
1,481,964 - A4249_RS07430 0.30 +0.7
1,481,964 - A4249_RS07430 0.30 +0.2
1,481,964 - A4249_RS07430 0.30 +0.6
1,481,964 - A4249_RS07430 0.30 -0.7
1,481,964 - A4249_RS07430 0.30 -0.8
1,481,964 - A4249_RS07430 0.30 +0.5
1,481,964 - A4249_RS07430 0.30 +0.8
1,482,152 + A4249_RS07430 0.61 +0.0
1,482,152 + A4249_RS07430 0.61 -0.0
1,482,153 - A4249_RS07430 0.61 +0.0
1,482,153 - A4249_RS07430 0.61 +0.1
1,482,153 - A4249_RS07430 0.61 +0.3
1,482,153 - A4249_RS07430 0.61 -0.2
1,482,158 + A4249_RS07430 0.62 -0.9
1,482,159 - A4249_RS07430 0.62 +0.3
1,482,159 - A4249_RS07430 0.62 +0.0
1,482,227 + A4249_RS07430 0.73 -0.8
1,482,227 + A4249_RS07430 0.73 -0.1
1,482,227 + A4249_RS07430 0.73 +0.7
1,482,227 + A4249_RS07430 0.73 +1.2
1,482,227 + A4249_RS07430 0.73 +1.0
1,482,227 + A4249_RS07430 0.73 +0.1
1,482,228 - A4249_RS07430 0.73 +0.5
1,482,228 - A4249_RS07430 0.73 -0.1
1,482,228 - A4249_RS07430 0.73 -0.1
1,482,228 - A4249_RS07430 0.73 -0.0
1,482,228 - A4249_RS07430 0.73 -0.4
1,482,408 + +0.2
1,482,408 + -2.1
1,482,498 + -0.7
1,482,498 + +0.2
1,482,499 - -0.5
1,482,499 - +0.0
1,482,610 + A4249_RS07435 0.10 -0.3
1,482,610 + A4249_RS07435 0.10 -1.0
1,482,610 + A4249_RS07435 0.10 -0.1
1,482,610 + A4249_RS07435 0.10 +0.7
1,482,610 + A4249_RS07435 0.10 +1.3
1,482,610 + A4249_RS07435 0.10 +1.1
1,482,610 + A4249_RS07435 0.10 +0.3
1,482,610 + A4249_RS07435 0.10 -0.5
1,482,610 + A4249_RS07435 0.10 -0.4
1,482,610 + A4249_RS07435 0.10 -1.3
1,482,610 + A4249_RS07435 0.10 +1.3
1,482,611 - A4249_RS07435 0.10 -2.0
1,482,611 - A4249_RS07435 0.10 -0.4
1,482,611 - A4249_RS07435 0.10 -0.6
1,482,611 - A4249_RS07435 0.10 +0.1
1,482,611 - A4249_RS07435 0.10 -0.6
1,482,611 - A4249_RS07435 0.10 +0.5
1,482,611 - A4249_RS07435 0.10 -0.1
1,482,611 - A4249_RS07435 0.10 -0.2
1,482,611 - A4249_RS07435 0.10 -0.2
1,482,611 - A4249_RS07435 0.10 +1.1
1,482,611 - A4249_RS07435 0.10 +0.5
1,482,611 - A4249_RS07435 0.10 +0.3
1,482,611 - A4249_RS07435 0.10 -0.4
1,482,611 - A4249_RS07435 0.10 +1.2
1,482,611 - A4249_RS07435 0.10 +0.9
1,482,611 - A4249_RS07435 0.10 -1.4
1,482,652 - A4249_RS07435 0.12 +0.8

Or see this region's nucleotide sequence