Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07290

Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07280 and A4249_RS07285 are separated by 532 nucleotidesA4249_RS07285 and A4249_RS16320 are separated by 63 nucleotidesA4249_RS16320 and A4249_RS07290 are separated by 3 nucleotidesA4249_RS07290 and A4249_RS07295 overlap by 4 nucleotidesA4249_RS07295 and A4249_RS07300 are separated by 0 nucleotidesA4249_RS07300 and A4249_RS07305 are separated by 103 nucleotides A4249_RS07280: A4249_RS07280 - MotA/TolQ/ExbB proton channel family protein, at 1,456,639 to 1,457,520 _RS07280 A4249_RS07285: A4249_RS07285 - tRNA-Phe, at 1,458,053 to 1,458,128 _RS07285 A4249_RS16320: A4249_RS16320 - DNA gyrase inhibitor YacG, at 1,458,192 to 1,458,356 _RS16320 A4249_RS07290: A4249_RS07290 - ribonuclease E/G, at 1,458,360 to 1,459,394 _RS07290 A4249_RS07295: A4249_RS07295 - Maf family protein, at 1,459,391 to 1,459,972 _RS07295 A4249_RS07300: A4249_RS07300 - translation initiation factor IF-1, at 1,459,973 to 1,460,191 _RS07300 A4249_RS07305: A4249_RS07305 - UPF0262 family protein, at 1,460,295 to 1,460,762 _RS07305 Position (kb) 1458 1459 1460Strain fitness (log2 ratio) -1 0 1at 1457.847 kb on - strandat 1457.940 kb on - strandat 1457.952 kb on - strandat 1458.013 kb on - strandat 1458.013 kb on - strandat 1458.013 kb on - strandat 1458.013 kb on - strandat 1458.013 kb on - strandat 1458.158 kb on - strandat 1458.158 kb on - strandat 1458.158 kb on - strandat 1458.310 kb on + strand, within A4249_RS16320at 1458.310 kb on + strand, within A4249_RS16320at 1458.310 kb on + strand, within A4249_RS16320at 1458.310 kb on + strand, within A4249_RS16320at 1458.310 kb on + strand, within A4249_RS16320at 1458.310 kb on + strand, within A4249_RS16320at 1458.311 kb on - strand, within A4249_RS16320at 1458.311 kb on - strand, within A4249_RS16320at 1458.311 kb on - strand, within A4249_RS16320at 1458.311 kb on - strand, within A4249_RS16320at 1458.311 kb on - strand, within A4249_RS16320at 1458.311 kb on - strand, within A4249_RS16320at 1458.311 kb on - strand, within A4249_RS16320at 1458.372 kb on + strandat 1458.372 kb on + strandat 1458.373 kb on - strandat 1458.373 kb on - strandat 1458.605 kb on + strand, within A4249_RS07290at 1459.080 kb on + strand, within A4249_RS07290at 1459.081 kb on - strand, within A4249_RS07290at 1459.081 kb on - strand, within A4249_RS07290at 1459.081 kb on - strand, within A4249_RS07290at 1459.084 kb on + strand, within A4249_RS07290at 1459.084 kb on + strand, within A4249_RS07290at 1459.085 kb on - strand, within A4249_RS07290at 1459.287 kb on - strand, within A4249_RS07290at 1459.287 kb on - strand, within A4249_RS07290at 1460.266 kb on - strandat 1460.287 kb on - strandat 1460.287 kb on - strandat 1460.287 kb on - strandat 1460.287 kb on - strandat 1460.287 kb on - strandat 1460.287 kb on - strandat 1460.287 kb on - strandat 1460.287 kb on - strandat 1460.308 kb on + strandat 1460.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
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1,457,847 - -0.3
1,457,940 - +0.7
1,457,952 - +1.3
1,458,013 - -0.0
1,458,013 - +0.3
1,458,013 - -0.2
1,458,013 - -0.7
1,458,013 - +0.0
1,458,158 - +1.7
1,458,158 - +0.7
1,458,158 - +0.3
1,458,310 + A4249_RS16320 0.72 -1.0
1,458,310 + A4249_RS16320 0.72 -0.7
1,458,310 + A4249_RS16320 0.72 -0.3
1,458,310 + A4249_RS16320 0.72 -0.8
1,458,310 + A4249_RS16320 0.72 +0.1
1,458,310 + A4249_RS16320 0.72 -0.6
1,458,311 - A4249_RS16320 0.72 +0.2
1,458,311 - A4249_RS16320 0.72 +0.3
1,458,311 - A4249_RS16320 0.72 -0.5
1,458,311 - A4249_RS16320 0.72 -0.3
1,458,311 - A4249_RS16320 0.72 +0.1
1,458,311 - A4249_RS16320 0.72 -0.6
1,458,311 - A4249_RS16320 0.72 -1.3
1,458,372 + -0.9
1,458,372 + -0.3
1,458,373 - -0.5
1,458,373 - -1.1
1,458,605 + A4249_RS07290 0.24 -0.3
1,459,080 + A4249_RS07290 0.70 +1.6
1,459,081 - A4249_RS07290 0.70 +0.8
1,459,081 - A4249_RS07290 0.70 +0.1
1,459,081 - A4249_RS07290 0.70 -0.3
1,459,084 + A4249_RS07290 0.70 -1.1
1,459,084 + A4249_RS07290 0.70 +0.1
1,459,085 - A4249_RS07290 0.70 +0.1
1,459,287 - A4249_RS07290 0.90 +1.3
1,459,287 - A4249_RS07290 0.90 +0.8
1,460,266 - -0.5
1,460,287 - +0.3
1,460,287 - -0.4
1,460,287 - -0.7
1,460,287 - -0.4
1,460,287 - -0.4
1,460,287 - -0.1
1,460,287 - -0.2
1,460,287 - -0.4
1,460,308 + +0.1
1,460,309 - +0.5

Or see this region's nucleotide sequence