Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06615

Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06605 and A4249_RS06610 overlap by 4 nucleotidesA4249_RS06610 and A4249_RS06615 overlap by 4 nucleotidesA4249_RS06615 and A4249_RS06620 are separated by 77 nucleotidesA4249_RS06620 and A4249_RS06625 overlap by 4 nucleotides A4249_RS06605: A4249_RS06605 - imidazolonepropionase, at 1,344,156 to 1,345,343 _RS06605 A4249_RS06610: A4249_RS06610 - histidine utilization repressor, at 1,345,340 to 1,346,065 _RS06610 A4249_RS06615: A4249_RS06615 - formimidoylglutamate deiminase, at 1,346,062 to 1,347,438 _RS06615 A4249_RS06620: A4249_RS06620 - N-formylglutamate deformylase, at 1,347,516 to 1,348,334 _RS06620 A4249_RS06625: A4249_RS06625 - urocanate hydratase, at 1,348,331 to 1,349,995 _RS06625 Position (kb) 1346 1347 1348Strain fitness (log2 ratio) -2 -1 0 1at 1345.069 kb on + strand, within A4249_RS06605at 1345.069 kb on + strand, within A4249_RS06605at 1345.069 kb on + strand, within A4249_RS06605at 1345.069 kb on + strand, within A4249_RS06605at 1345.069 kb on + strand, within A4249_RS06605at 1345.069 kb on + strand, within A4249_RS06605at 1345.069 kb on + strand, within A4249_RS06605at 1345.069 kb on + strand, within A4249_RS06605at 1345.069 kb on + strand, within A4249_RS06605at 1345.069 kb on + strand, within A4249_RS06605at 1345.070 kb on - strand, within A4249_RS06605at 1345.070 kb on - strand, within A4249_RS06605at 1345.070 kb on - strand, within A4249_RS06605at 1345.070 kb on - strand, within A4249_RS06605at 1345.280 kb on - strandat 1345.280 kb on - strandat 1345.280 kb on - strandat 1345.508 kb on + strand, within A4249_RS06610at 1345.508 kb on + strand, within A4249_RS06610at 1345.508 kb on + strand, within A4249_RS06610at 1345.509 kb on - strand, within A4249_RS06610at 1345.509 kb on - strand, within A4249_RS06610at 1345.509 kb on - strand, within A4249_RS06610at 1345.509 kb on - strand, within A4249_RS06610at 1345.606 kb on + strand, within A4249_RS06610at 1345.606 kb on + strand, within A4249_RS06610at 1345.606 kb on + strand, within A4249_RS06610at 1345.607 kb on - strand, within A4249_RS06610at 1345.607 kb on - strand, within A4249_RS06610at 1345.622 kb on + strand, within A4249_RS06610at 1345.623 kb on - strand, within A4249_RS06610at 1345.623 kb on - strand, within A4249_RS06610at 1345.623 kb on - strand, within A4249_RS06610at 1345.705 kb on + strand, within A4249_RS06610at 1345.705 kb on + strand, within A4249_RS06610at 1345.706 kb on - strand, within A4249_RS06610at 1345.785 kb on + strand, within A4249_RS06610at 1345.785 kb on + strand, within A4249_RS06610at 1345.786 kb on - strand, within A4249_RS06610at 1345.786 kb on - strand, within A4249_RS06610at 1345.786 kb on - strand, within A4249_RS06610at 1345.786 kb on - strand, within A4249_RS06610at 1345.786 kb on - strand, within A4249_RS06610at 1345.786 kb on - strand, within A4249_RS06610at 1345.786 kb on - strand, within A4249_RS06610at 1345.791 kb on + strand, within A4249_RS06610at 1345.792 kb on - strand, within A4249_RS06610at 1345.792 kb on - strand, within A4249_RS06610at 1345.834 kb on + strand, within A4249_RS06610at 1345.834 kb on + strand, within A4249_RS06610at 1345.835 kb on - strand, within A4249_RS06610at 1346.023 kb on + strandat 1346.023 kb on + strandat 1346.023 kb on + strandat 1346.023 kb on + strandat 1346.023 kb on + strandat 1346.024 kb on - strandat 1346.024 kb on - strandat 1346.024 kb on - strandat 1346.043 kb on + strandat 1346.043 kb on + strandat 1346.043 kb on + strandat 1346.043 kb on + strandat 1346.043 kb on + strandat 1346.044 kb on - strandat 1346.044 kb on - strandat 1346.044 kb on - strandat 1346.044 kb on - strandat 1346.044 kb on - strandat 1346.044 kb on - strandat 1346.044 kb on - strandat 1346.044 kb on - strandat 1346.044 kb on - strandat 1346.044 kb on - strandat 1346.057 kb on + strandat 1346.057 kb on + strandat 1346.057 kb on + strandat 1346.057 kb on + strandat 1346.057 kb on + strandat 1346.057 kb on + strandat 1346.057 kb on + strandat 1346.057 kb on + strandat 1346.057 kb on + strandat 1346.057 kb on + strandat 1346.057 kb on + strandat 1346.057 kb on + strandat 1346.057 kb on + strandat 1346.058 kb on - strandat 1346.058 kb on - strandat 1346.058 kb on - strandat 1346.058 kb on - strandat 1346.058 kb on - strandat 1346.058 kb on - strandat 1346.058 kb on - strandat 1346.250 kb on + strand, within A4249_RS06615at 1346.250 kb on + strand, within A4249_RS06615at 1346.251 kb on - strand, within A4249_RS06615at 1346.251 kb on - strand, within A4249_RS06615at 1346.251 kb on - strand, within A4249_RS06615at 1346.260 kb on + strand, within A4249_RS06615at 1346.260 kb on + strand, within A4249_RS06615at 1346.261 kb on - strand, within A4249_RS06615at 1346.261 kb on - strand, within A4249_RS06615at 1346.286 kb on + strand, within A4249_RS06615at 1346.287 kb on - strand, within A4249_RS06615at 1346.341 kb on + strand, within A4249_RS06615at 1346.341 kb on + strand, within A4249_RS06615at 1346.342 kb on - strand, within A4249_RS06615at 1346.342 kb on - strand, within A4249_RS06615at 1346.342 kb on - strand, within A4249_RS06615at 1346.411 kb on + strand, within A4249_RS06615at 1346.412 kb on - strand, within A4249_RS06615at 1346.412 kb on - strand, within A4249_RS06615at 1346.614 kb on + strand, within A4249_RS06615at 1346.614 kb on + strand, within A4249_RS06615at 1346.614 kb on + strand, within A4249_RS06615at 1346.614 kb on + strand, within A4249_RS06615at 1346.614 kb on + strand, within A4249_RS06615at 1346.614 kb on + strand, within A4249_RS06615at 1346.614 kb on + strand, within A4249_RS06615at 1346.614 kb on + strand, within A4249_RS06615at 1346.614 kb on + strand, within A4249_RS06615at 1346.614 kb on + strand, within A4249_RS06615at 1346.615 kb on - strand, within A4249_RS06615at 1346.615 kb on - strand, within A4249_RS06615at 1346.615 kb on - strand, within A4249_RS06615at 1346.615 kb on - strand, within A4249_RS06615at 1346.615 kb on - strand, within A4249_RS06615at 1346.615 kb on - strand, within A4249_RS06615at 1346.725 kb on + strand, within A4249_RS06615at 1346.942 kb on + strand, within A4249_RS06615at 1346.942 kb on + strand, within A4249_RS06615at 1346.942 kb on + strand, within A4249_RS06615at 1346.942 kb on + strand, within A4249_RS06615at 1346.942 kb on + strand, within A4249_RS06615at 1346.942 kb on + strand, within A4249_RS06615at 1346.942 kb on + strand, within A4249_RS06615at 1346.942 kb on + strand, within A4249_RS06615at 1346.943 kb on - strand, within A4249_RS06615at 1346.943 kb on - strand, within A4249_RS06615at 1346.943 kb on - strand, within A4249_RS06615at 1346.943 kb on - strand, within A4249_RS06615at 1346.943 kb on - strand, within A4249_RS06615at 1346.943 kb on - strand, within A4249_RS06615at 1346.943 kb on - strand, within A4249_RS06615at 1346.943 kb on - strand, within A4249_RS06615at 1346.943 kb on - strand, within A4249_RS06615at 1347.026 kb on + strand, within A4249_RS06615at 1347.027 kb on - strand, within A4249_RS06615at 1347.027 kb on - strand, within A4249_RS06615at 1347.056 kb on + strand, within A4249_RS06615at 1347.057 kb on - strand, within A4249_RS06615at 1347.057 kb on - strand, within A4249_RS06615at 1347.057 kb on - strand, within A4249_RS06615at 1347.161 kb on + strand, within A4249_RS06615at 1347.161 kb on + strand, within A4249_RS06615at 1347.161 kb on + strand, within A4249_RS06615at 1347.161 kb on + strand, within A4249_RS06615at 1347.161 kb on + strand, within A4249_RS06615at 1347.162 kb on - strand, within A4249_RS06615at 1347.162 kb on - strand, within A4249_RS06615at 1347.162 kb on - strand, within A4249_RS06615at 1347.162 kb on - strand, within A4249_RS06615at 1347.162 kb on - strand, within A4249_RS06615at 1347.466 kb on + strandat 1347.466 kb on + strandat 1347.467 kb on - strandat 1347.467 kb on - strandat 1347.478 kb on + strandat 1347.666 kb on + strand, within A4249_RS06620at 1347.666 kb on + strand, within A4249_RS06620at 1347.667 kb on - strand, within A4249_RS06620at 1347.762 kb on + strand, within A4249_RS06620at 1347.770 kb on + strand, within A4249_RS06620at 1347.771 kb on - strand, within A4249_RS06620at 1347.771 kb on - strand, within A4249_RS06620at 1347.822 kb on + strand, within A4249_RS06620at 1347.823 kb on - strand, within A4249_RS06620at 1347.889 kb on - strand, within A4249_RS06620at 1348.076 kb on + strand, within A4249_RS06620at 1348.076 kb on + strand, within A4249_RS06620at 1348.076 kb on + strand, within A4249_RS06620at 1348.076 kb on + strand, within A4249_RS06620at 1348.077 kb on - strand, within A4249_RS06620at 1348.077 kb on - strand, within A4249_RS06620at 1348.077 kb on - strand, within A4249_RS06620at 1348.077 kb on - strand, within A4249_RS06620at 1348.077 kb on - strand, within A4249_RS06620at 1348.197 kb on + strand, within A4249_RS06620at 1348.197 kb on + strand, within A4249_RS06620at 1348.197 kb on + strand, within A4249_RS06620at 1348.197 kb on + strand, within A4249_RS06620at 1348.197 kb on + strand, within A4249_RS06620at 1348.197 kb on + strand, within A4249_RS06620at 1348.198 kb on - strand, within A4249_RS06620at 1348.198 kb on - strand, within A4249_RS06620at 1348.248 kb on + strand, within A4249_RS06620at 1348.248 kb on + strand, within A4249_RS06620at 1348.248 kb on + strand, within A4249_RS06620at 1348.283 kb on + strandat 1348.283 kb on + strandat 1348.283 kb on + strandat 1348.284 kb on - strandat 1348.284 kb on - strandat 1348.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
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1,345,069 + A4249_RS06605 0.77 -0.7
1,345,069 + A4249_RS06605 0.77 +1.2
1,345,069 + A4249_RS06605 0.77 +1.0
1,345,069 + A4249_RS06605 0.77 -0.5
1,345,069 + A4249_RS06605 0.77 +0.0
1,345,069 + A4249_RS06605 0.77 +0.2
1,345,069 + A4249_RS06605 0.77 -0.2
1,345,069 + A4249_RS06605 0.77 +0.1
1,345,069 + A4249_RS06605 0.77 -0.4
1,345,069 + A4249_RS06605 0.77 +0.7
1,345,070 - A4249_RS06605 0.77 -0.5
1,345,070 - A4249_RS06605 0.77 -0.7
1,345,070 - A4249_RS06605 0.77 -0.0
1,345,070 - A4249_RS06605 0.77 -0.1
1,345,280 - -1.1
1,345,280 - +1.6
1,345,280 - +0.4
1,345,508 + A4249_RS06610 0.23 -0.3
1,345,508 + A4249_RS06610 0.23 -0.1
1,345,508 + A4249_RS06610 0.23 -0.1
1,345,509 - A4249_RS06610 0.23 -0.3
1,345,509 - A4249_RS06610 0.23 -0.6
1,345,509 - A4249_RS06610 0.23 +1.2
1,345,509 - A4249_RS06610 0.23 -0.2
1,345,606 + A4249_RS06610 0.37 -1.0
1,345,606 + A4249_RS06610 0.37 +0.7
1,345,606 + A4249_RS06610 0.37 -0.8
1,345,607 - A4249_RS06610 0.37 +1.3
1,345,607 - A4249_RS06610 0.37 +1.3
1,345,622 + A4249_RS06610 0.39 -1.0
1,345,623 - A4249_RS06610 0.39 +1.0
1,345,623 - A4249_RS06610 0.39 -1.3
1,345,623 - A4249_RS06610 0.39 +1.0
1,345,705 + A4249_RS06610 0.50 +1.4
1,345,705 + A4249_RS06610 0.50 +0.3
1,345,706 - A4249_RS06610 0.50 -0.3
1,345,785 + A4249_RS06610 0.61 +0.0
1,345,785 + A4249_RS06610 0.61 -1.1
1,345,786 - A4249_RS06610 0.61 -0.1
1,345,786 - A4249_RS06610 0.61 +0.3
1,345,786 - A4249_RS06610 0.61 -0.4
1,345,786 - A4249_RS06610 0.61 +0.4
1,345,786 - A4249_RS06610 0.61 -1.5
1,345,786 - A4249_RS06610 0.61 -0.1
1,345,786 - A4249_RS06610 0.61 -0.3
1,345,791 + A4249_RS06610 0.62 -0.1
1,345,792 - A4249_RS06610 0.62 +1.3
1,345,792 - A4249_RS06610 0.62 -1.6
1,345,834 + A4249_RS06610 0.68 -0.5
1,345,834 + A4249_RS06610 0.68 +1.5
1,345,835 - A4249_RS06610 0.68 +0.4
1,346,023 + +0.1
1,346,023 + -0.8
1,346,023 + +0.6
1,346,023 + +0.6
1,346,023 + +0.4
1,346,024 - +0.7
1,346,024 - +0.7
1,346,024 - +0.4
1,346,043 + -0.1
1,346,043 + -0.3
1,346,043 + +0.2
1,346,043 + -1.0
1,346,043 + -0.6
1,346,044 - -0.4
1,346,044 - +0.1
1,346,044 - -0.5
1,346,044 - -0.5
1,346,044 - -0.8
1,346,044 - -0.6
1,346,044 - -0.5
1,346,044 - -0.7
1,346,044 - -2.6
1,346,044 - +0.3
1,346,057 + +0.5
1,346,057 + -0.6
1,346,057 + -0.4
1,346,057 + -0.6
1,346,057 + -0.3
1,346,057 + -0.6
1,346,057 + -0.4
1,346,057 + -1.7
1,346,057 + -0.3
1,346,057 + +0.5
1,346,057 + +0.1
1,346,057 + +0.2
1,346,057 + -0.3
1,346,058 - -0.5
1,346,058 - -0.8
1,346,058 - -0.2
1,346,058 - -1.1
1,346,058 - -0.0
1,346,058 - -0.3
1,346,058 - -0.7
1,346,250 + A4249_RS06615 0.14 +0.9
1,346,250 + A4249_RS06615 0.14 -1.2
1,346,251 - A4249_RS06615 0.14 +0.5
1,346,251 - A4249_RS06615 0.14 -0.8
1,346,251 - A4249_RS06615 0.14 -0.3
1,346,260 + A4249_RS06615 0.14 -0.2
1,346,260 + A4249_RS06615 0.14 +0.5
1,346,261 - A4249_RS06615 0.14 +0.2
1,346,261 - A4249_RS06615 0.14 +1.2
1,346,286 + A4249_RS06615 0.16 -1.0
1,346,287 - A4249_RS06615 0.16 +0.4
1,346,341 + A4249_RS06615 0.20 -0.4
1,346,341 + A4249_RS06615 0.20 -0.2
1,346,342 - A4249_RS06615 0.20 -0.7
1,346,342 - A4249_RS06615 0.20 +0.3
1,346,342 - A4249_RS06615 0.20 -1.8
1,346,411 + A4249_RS06615 0.25 +0.2
1,346,412 - A4249_RS06615 0.25 +0.8
1,346,412 - A4249_RS06615 0.25 +1.0
1,346,614 + A4249_RS06615 0.40 +0.1
1,346,614 + A4249_RS06615 0.40 -0.2
1,346,614 + A4249_RS06615 0.40 -0.0
1,346,614 + A4249_RS06615 0.40 +0.4
1,346,614 + A4249_RS06615 0.40 -0.1
1,346,614 + A4249_RS06615 0.40 +0.0
1,346,614 + A4249_RS06615 0.40 -1.2
1,346,614 + A4249_RS06615 0.40 +0.8
1,346,614 + A4249_RS06615 0.40 +0.6
1,346,614 + A4249_RS06615 0.40 +0.4
1,346,615 - A4249_RS06615 0.40 +0.3
1,346,615 - A4249_RS06615 0.40 -0.5
1,346,615 - A4249_RS06615 0.40 -0.4
1,346,615 - A4249_RS06615 0.40 +0.2
1,346,615 - A4249_RS06615 0.40 -0.4
1,346,615 - A4249_RS06615 0.40 +0.4
1,346,725 + A4249_RS06615 0.48 -0.3
1,346,942 + A4249_RS06615 0.64 +0.1
1,346,942 + A4249_RS06615 0.64 -0.7
1,346,942 + A4249_RS06615 0.64 -0.0
1,346,942 + A4249_RS06615 0.64 -0.7
1,346,942 + A4249_RS06615 0.64 +0.1
1,346,942 + A4249_RS06615 0.64 -0.6
1,346,942 + A4249_RS06615 0.64 -1.0
1,346,942 + A4249_RS06615 0.64 -0.4
1,346,943 - A4249_RS06615 0.64 -0.1
1,346,943 - A4249_RS06615 0.64 -1.8
1,346,943 - A4249_RS06615 0.64 -1.7
1,346,943 - A4249_RS06615 0.64 +1.3
1,346,943 - A4249_RS06615 0.64 +0.2
1,346,943 - A4249_RS06615 0.64 +1.0
1,346,943 - A4249_RS06615 0.64 +0.3
1,346,943 - A4249_RS06615 0.64 -0.3
1,346,943 - A4249_RS06615 0.64 -0.5
1,347,026 + A4249_RS06615 0.70 +0.5
1,347,027 - A4249_RS06615 0.70 +0.3
1,347,027 - A4249_RS06615 0.70 -0.4
1,347,056 + A4249_RS06615 0.72 -0.5
1,347,057 - A4249_RS06615 0.72 -0.5
1,347,057 - A4249_RS06615 0.72 -1.4
1,347,057 - A4249_RS06615 0.72 -1.0
1,347,161 + A4249_RS06615 0.80 -0.1
1,347,161 + A4249_RS06615 0.80 -0.4
1,347,161 + A4249_RS06615 0.80 -1.2
1,347,161 + A4249_RS06615 0.80 +1.3
1,347,161 + A4249_RS06615 0.80 -0.4
1,347,162 - A4249_RS06615 0.80 +0.7
1,347,162 - A4249_RS06615 0.80 -0.1
1,347,162 - A4249_RS06615 0.80 -0.6
1,347,162 - A4249_RS06615 0.80 +0.5
1,347,162 - A4249_RS06615 0.80 +0.5
1,347,466 + -0.3
1,347,466 + -0.1
1,347,467 - -0.5
1,347,467 - -0.0
1,347,478 + +0.9
1,347,666 + A4249_RS06620 0.18 +0.4
1,347,666 + A4249_RS06620 0.18 -0.4
1,347,667 - A4249_RS06620 0.18 +0.5
1,347,762 + A4249_RS06620 0.30 -1.8
1,347,770 + A4249_RS06620 0.31 +0.1
1,347,771 - A4249_RS06620 0.31 -0.6
1,347,771 - A4249_RS06620 0.31 -0.1
1,347,822 + A4249_RS06620 0.37 -0.2
1,347,823 - A4249_RS06620 0.37 +0.6
1,347,889 - A4249_RS06620 0.46 +0.3
1,348,076 + A4249_RS06620 0.68 +0.9
1,348,076 + A4249_RS06620 0.68 +0.2
1,348,076 + A4249_RS06620 0.68 -0.1
1,348,076 + A4249_RS06620 0.68 -0.7
1,348,077 - A4249_RS06620 0.68 +0.7
1,348,077 - A4249_RS06620 0.68 -0.9
1,348,077 - A4249_RS06620 0.68 -0.2
1,348,077 - A4249_RS06620 0.68 -1.8
1,348,077 - A4249_RS06620 0.68 +1.1
1,348,197 + A4249_RS06620 0.83 +0.2
1,348,197 + A4249_RS06620 0.83 +0.3
1,348,197 + A4249_RS06620 0.83 +0.7
1,348,197 + A4249_RS06620 0.83 +0.4
1,348,197 + A4249_RS06620 0.83 -0.7
1,348,197 + A4249_RS06620 0.83 -0.3
1,348,198 - A4249_RS06620 0.83 +0.0
1,348,198 - A4249_RS06620 0.83 +0.2
1,348,248 + A4249_RS06620 0.89 -1.9
1,348,248 + A4249_RS06620 0.89 +0.4
1,348,248 + A4249_RS06620 0.89 +0.8
1,348,283 + -0.9
1,348,283 + -1.5
1,348,283 + -1.4
1,348,284 - -0.1
1,348,284 - -0.5
1,348,284 - -0.0

Or see this region's nucleotide sequence