Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06020

Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06005 and A4249_RS06010 overlap by 1 nucleotidesA4249_RS06010 and A4249_RS06015 overlap by 4 nucleotidesA4249_RS06015 and A4249_RS06020 overlap by 4 nucleotidesA4249_RS06020 and A4249_RS06025 overlap by 1 nucleotidesA4249_RS06025 and A4249_RS06030 are separated by 66 nucleotides A4249_RS06005: A4249_RS06005 - thiamine-phosphate kinase, at 1,223,832 to 1,224,821 _RS06005 A4249_RS06010: A4249_RS06010 - transcription antitermination factor NusB, at 1,224,821 to 1,225,345 _RS06010 A4249_RS06015: A4249_RS06015 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,225,342 to 1,225,803 _RS06015 A4249_RS06020: A4249_RS06020 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 1,225,800 to 1,226,933 _RS06020 A4249_RS06025: A4249_RS06025 - riboflavin synthase, at 1,226,933 to 1,227,535 _RS06025 A4249_RS06030: A4249_RS06030 - RibD family protein, at 1,227,602 to 1,228,222 _RS06030 Position (kb) 1225 1226 1227Strain fitness (log2 ratio) -1 0 1at 1224.822 kb on + strandat 1224.822 kb on + strandat 1224.822 kb on + strandat 1224.822 kb on + strandat 1224.822 kb on + strandat 1224.822 kb on + strandat 1224.823 kb on - strandat 1224.823 kb on - strandat 1224.823 kb on - strandat 1224.823 kb on - strandat 1224.823 kb on - strandat 1224.823 kb on - strandat 1224.843 kb on - strandat 1224.843 kb on - strandat 1225.810 kb on - strandat 1227.564 kb on + strandat 1227.565 kb on - strandat 1227.565 kb on - strandat 1227.571 kb on + strandat 1227.572 kb on - strandat 1227.572 kb on - strandat 1227.580 kb on + strandat 1227.580 kb on + strandat 1227.580 kb on + strandat 1227.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
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1,224,822 + +0.2
1,224,822 + -0.7
1,224,822 + -0.1
1,224,822 + -0.3
1,224,822 + +0.0
1,224,822 + -0.6
1,224,823 - +0.4
1,224,823 - +1.5
1,224,823 - +0.4
1,224,823 - +0.4
1,224,823 - +0.5
1,224,823 - -0.4
1,224,843 - -0.5
1,224,843 - +0.3
1,225,810 - +0.0
1,227,564 + -0.0
1,227,565 - -0.6
1,227,565 - +0.4
1,227,571 + +1.3
1,227,572 - +0.0
1,227,572 - +0.0
1,227,580 + +0.4
1,227,580 + -0.7
1,227,580 + +0.0
1,227,581 - -0.6

Or see this region's nucleotide sequence