Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS05940 and A4249_RS05945 are separated by 134 nucleotides A4249_RS05945 and A4249_RS05950 overlap by 1 nucleotides A4249_RS05950 and A4249_RS05955 are separated by 77 nucleotides A4249_RS05955 and A4249_RS05960 are separated by 59 nucleotides A4249_RS05960 and A4249_RS05965 are separated by 5 nucleotides
A4249_RS05940: A4249_RS05940 - COX15/CtaA family protein, at 1,214,488 to 1,215,588
_RS05940
A4249_RS05945: A4249_RS05945 - hypothetical protein, at 1,215,723 to 1,215,974
_RS05945
A4249_RS05950: A4249_RS05950 - DUF2842 domain-containing protein, at 1,215,974 to 1,216,168
_RS05950
A4249_RS05955: A4249_RS05955 - tRNA-Pro, at 1,216,246 to 1,216,322
_RS05955
A4249_RS05960: A4249_RS05960 - MerR family transcriptional regulator, at 1,216,382 to 1,216,789
_RS05960
A4249_RS05965: A4249_RS05965 - integration host factor subunit alpha, at 1,216,795 to 1,217,103
_RS05965
Position (kb)
1215
1216
1217 Strain fitness (log2 ratio)
-2
-1
0
1 at 1215.094 kb on - strand, within A4249_RS05940 at 1215.094 kb on - strand, within A4249_RS05940 at 1215.215 kb on - strand, within A4249_RS05940 at 1215.276 kb on + strand, within A4249_RS05940 at 1215.276 kb on + strand, within A4249_RS05940 at 1215.276 kb on + strand, within A4249_RS05940 at 1215.277 kb on - strand, within A4249_RS05940 at 1215.368 kb on + strand, within A4249_RS05940 at 1215.368 kb on + strand, within A4249_RS05940 at 1215.369 kb on - strand, within A4249_RS05940 at 1215.386 kb on + strand, within A4249_RS05940 at 1215.387 kb on - strand, within A4249_RS05940 at 1215.387 kb on - strand, within A4249_RS05940 at 1215.387 kb on - strand, within A4249_RS05940 at 1215.421 kb on + strand, within A4249_RS05940 at 1215.422 kb on - strand, within A4249_RS05940 at 1215.562 kb on - strand at 1215.613 kb on - strand at 1215.654 kb on + strand at 1215.655 kb on - strand at 1215.655 kb on - strand at 1215.655 kb on - strand at 1215.729 kb on + strand at 1215.730 kb on - strand at 1215.730 kb on - strand at 1215.730 kb on - strand at 1216.021 kb on - strand, within A4249_RS05950 at 1216.189 kb on + strand at 1216.190 kb on - strand at 1216.383 kb on + strand at 1216.383 kb on + strand at 1216.383 kb on + strand at 1216.384 kb on - strand at 1216.650 kb on + strand, within A4249_RS05960 at 1216.651 kb on - strand, within A4249_RS05960 at 1217.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C) remove 1,215,094 - A4249_RS05940 0.55 +0.3 1,215,094 - A4249_RS05940 0.55 +0.8 1,215,215 - A4249_RS05940 0.66 -0.7 1,215,276 + A4249_RS05940 0.72 +1.4 1,215,276 + A4249_RS05940 0.72 -0.1 1,215,276 + A4249_RS05940 0.72 +0.4 1,215,277 - A4249_RS05940 0.72 -0.5 1,215,368 + A4249_RS05940 0.80 -0.2 1,215,368 + A4249_RS05940 0.80 -0.5 1,215,369 - A4249_RS05940 0.80 -0.4 1,215,386 + A4249_RS05940 0.82 -0.2 1,215,387 - A4249_RS05940 0.82 -0.9 1,215,387 - A4249_RS05940 0.82 -0.5 1,215,387 - A4249_RS05940 0.82 +0.6 1,215,421 + A4249_RS05940 0.85 -0.8 1,215,422 - A4249_RS05940 0.85 -0.1 1,215,562 - -0.3 1,215,613 - -0.5 1,215,654 + -0.8 1,215,655 - -2.3 1,215,655 - +0.7 1,215,655 - -1.6 1,215,729 + -0.2 1,215,730 - +1.3 1,215,730 - +1.4 1,215,730 - +0.8 1,216,021 - A4249_RS05950 0.24 +0.4 1,216,189 + +1.1 1,216,190 - -0.8 1,216,383 + +0.4 1,216,383 + -0.2 1,216,383 + -0.7 1,216,384 - -0.2 1,216,650 + A4249_RS05960 0.66 -0.2 1,216,651 - A4249_RS05960 0.66 -0.1 1,217,107 - -0.2
Or see this region's nucleotide sequence