Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03650 and A4249_RS03655 are separated by 372 nucleotides A4249_RS03655 and A4249_RS03660 are separated by 91 nucleotides
A4249_RS03650: A4249_RS03650 - hypothetical protein, at 772,563 to 773,279
_RS03650
A4249_RS03655: A4249_RS03655 - winged helix-turn-helix domain-containing protein, at 773,652 to 774,587
_RS03655
A4249_RS03660: A4249_RS03660 - PAS domain-containing sensor histidine kinase, at 774,679 to 775,686
_RS03660
Position (kb) 773
774
775 Strain fitness (log2 ratio) -2
-1
0
1
2 at 772.746 kb on + strand, within A4249_RS03650 at 772.746 kb on + strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.806 kb on + strand, within A4249_RS03650 at 772.806 kb on + strand, within A4249_RS03650 at 772.806 kb on + strand, within A4249_RS03650 at 772.806 kb on + strand, within A4249_RS03650 at 772.806 kb on + strand, within A4249_RS03650 at 772.807 kb on - strand, within A4249_RS03650 at 772.935 kb on + strand, within A4249_RS03650 at 772.936 kb on - strand, within A4249_RS03650 at 772.936 kb on - strand, within A4249_RS03650 at 772.936 kb on - strand, within A4249_RS03650 at 773.020 kb on - strand, within A4249_RS03650 at 773.020 kb on - strand, within A4249_RS03650 at 773.069 kb on + strand, within A4249_RS03650 at 773.070 kb on - strand, within A4249_RS03650 at 773.070 kb on - strand, within A4249_RS03650 at 773.237 kb on + strand at 773.238 kb on - strand at 773.238 kb on - strand at 773.238 kb on - strand at 773.238 kb on - strand at 773.305 kb on + strand at 773.305 kb on + strand at 773.305 kb on + strand at 773.305 kb on + strand at 773.305 kb on + strand at 773.306 kb on - strand at 773.306 kb on - strand at 773.306 kb on - strand at 773.306 kb on - strand at 773.306 kb on - strand at 773.306 kb on - strand at 773.314 kb on + strand at 773.314 kb on + strand at 773.315 kb on - strand at 773.429 kb on + strand at 773.429 kb on + strand at 773.429 kb on + strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.490 kb on - strand at 773.490 kb on - strand at 773.665 kb on + strand at 773.665 kb on + strand at 773.665 kb on + strand at 773.693 kb on + strand at 773.693 kb on + strand at 773.753 kb on - strand, within A4249_RS03655 at 773.872 kb on + strand, within A4249_RS03655 at 773.872 kb on + strand, within A4249_RS03655 at 773.872 kb on + strand, within A4249_RS03655 at 773.872 kb on + strand, within A4249_RS03655 at 773.872 kb on + strand, within A4249_RS03655 at 773.872 kb on + strand, within A4249_RS03655 at 773.873 kb on - strand, within A4249_RS03655 at 773.873 kb on - strand, within A4249_RS03655 at 773.873 kb on - strand, within A4249_RS03655 at 773.924 kb on + strand, within A4249_RS03655 at 773.924 kb on + strand, within A4249_RS03655 at 773.924 kb on + strand, within A4249_RS03655 at 773.925 kb on - strand, within A4249_RS03655 at 773.925 kb on - strand, within A4249_RS03655 at 774.228 kb on + strand, within A4249_RS03655 at 774.228 kb on + strand, within A4249_RS03655 at 774.228 kb on + strand, within A4249_RS03655 at 774.228 kb on + strand, within A4249_RS03655 at 774.228 kb on + strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.534 kb on + strand at 774.534 kb on + strand at 774.534 kb on + strand at 774.534 kb on + strand at 774.535 kb on - strand at 774.535 kb on - strand at 774.535 kb on - strand at 774.535 kb on - strand at 774.547 kb on + strand at 774.689 kb on + strand at 774.690 kb on + strand at 774.691 kb on - strand at 774.691 kb on - strand at 774.759 kb on + strand at 774.759 kb on + strand at 774.759 kb on + strand at 774.759 kb on + strand at 774.759 kb on + strand at 774.759 kb on + strand at 774.759 kb on + strand at 774.760 kb on - strand at 774.760 kb on - strand at 774.760 kb on - strand at 774.760 kb on - strand at 774.760 kb on - strand at 774.760 kb on - strand at 774.763 kb on + strand at 774.763 kb on + strand at 774.764 kb on - strand at 774.764 kb on - strand at 774.764 kb on - strand at 774.829 kb on + strand, within A4249_RS03660 at 774.829 kb on + strand, within A4249_RS03660 at 774.830 kb on - strand, within A4249_RS03660 at 774.830 kb on - strand, within A4249_RS03660 at 774.830 kb on - strand, within A4249_RS03660 at 774.841 kb on + strand, within A4249_RS03660 at 774.841 kb on + strand, within A4249_RS03660 at 774.841 kb on + strand, within A4249_RS03660 at 774.842 kb on - strand, within A4249_RS03660 at 774.842 kb on - strand, within A4249_RS03660 at 774.842 kb on - strand, within A4249_RS03660 at 774.842 kb on - strand, within A4249_RS03660 at 774.842 kb on - strand, within A4249_RS03660 at 774.843 kb on + strand, within A4249_RS03660 at 774.843 kb on + strand, within A4249_RS03660 at 774.843 kb on + strand, within A4249_RS03660 at 774.843 kb on + strand, within A4249_RS03660 at 774.844 kb on - strand, within A4249_RS03660 at 774.844 kb on - strand, within A4249_RS03660 at 774.844 kb on - strand, within A4249_RS03660 at 774.844 kb on - strand, within A4249_RS03660 at 775.033 kb on + strand, within A4249_RS03660 at 775.033 kb on + strand, within A4249_RS03660 at 775.033 kb on + strand, within A4249_RS03660 at 775.034 kb on - strand, within A4249_RS03660 at 775.034 kb on - strand, within A4249_RS03660 at 775.034 kb on - strand, within A4249_RS03660 at 775.077 kb on + strand, within A4249_RS03660 at 775.332 kb on + strand, within A4249_RS03660 at 775.333 kb on - strand, within A4249_RS03660 at 775.333 kb on - strand, within A4249_RS03660
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C) remove 772,746 + A4249_RS03650 0.26 +0.0 772,746 + A4249_RS03650 0.26 +0.1 772,747 - A4249_RS03650 0.26 -0.1 772,747 - A4249_RS03650 0.26 -0.2 772,747 - A4249_RS03650 0.26 +0.1 772,747 - A4249_RS03650 0.26 +0.0 772,747 - A4249_RS03650 0.26 -0.1 772,747 - A4249_RS03650 0.26 -0.2 772,747 - A4249_RS03650 0.26 +0.0 772,747 - A4249_RS03650 0.26 -0.1 772,747 - A4249_RS03650 0.26 -0.7 772,747 - A4249_RS03650 0.26 -0.1 772,747 - A4249_RS03650 0.26 +0.6 772,806 + A4249_RS03650 0.34 +1.4 772,806 + A4249_RS03650 0.34 -0.7 772,806 + A4249_RS03650 0.34 -0.2 772,806 + A4249_RS03650 0.34 -0.7 772,806 + A4249_RS03650 0.34 -1.1 772,807 - A4249_RS03650 0.34 +0.3 772,935 + A4249_RS03650 0.52 +0.1 772,936 - A4249_RS03650 0.52 -0.5 772,936 - A4249_RS03650 0.52 -1.1 772,936 - A4249_RS03650 0.52 -1.0 773,020 - A4249_RS03650 0.64 -0.9 773,020 - A4249_RS03650 0.64 -1.1 773,069 + A4249_RS03650 0.71 +0.1 773,070 - A4249_RS03650 0.71 +0.6 773,070 - A4249_RS03650 0.71 +0.1 773,237 + +0.1 773,238 - +0.1 773,238 - -0.9 773,238 - +0.3 773,238 - +0.4 773,305 + +0.2 773,305 + +0.1 773,305 + -0.2 773,305 + -0.9 773,305 + +0.0 773,306 - -1.5 773,306 - -0.3 773,306 - -0.7 773,306 - +0.2 773,306 - -1.7 773,306 - -0.1 773,314 + +0.4 773,314 + -0.1 773,315 - -0.1 773,429 + +0.1 773,429 + -0.5 773,429 + -0.8 773,430 - -0.4 773,430 - +0.1 773,430 - +0.3 773,430 - -0.1 773,430 - +0.1 773,430 - +0.2 773,430 - -0.3 773,430 - -0.3 773,430 - -0.1 773,490 - -0.3 773,490 - +0.8 773,665 + +0.5 773,665 + -0.2 773,665 + +0.1 773,693 + -1.3 773,693 + -0.0 773,753 - A4249_RS03655 0.11 -0.7 773,872 + A4249_RS03655 0.24 +0.1 773,872 + A4249_RS03655 0.24 +0.1 773,872 + A4249_RS03655 0.24 -1.1 773,872 + A4249_RS03655 0.24 +0.2 773,872 + A4249_RS03655 0.24 -0.9 773,872 + A4249_RS03655 0.24 -1.1 773,873 - A4249_RS03655 0.24 +0.2 773,873 - A4249_RS03655 0.24 -0.5 773,873 - A4249_RS03655 0.24 +1.2 773,924 + A4249_RS03655 0.29 -0.9 773,924 + A4249_RS03655 0.29 -0.6 773,924 + A4249_RS03655 0.29 -0.0 773,925 - A4249_RS03655 0.29 +0.1 773,925 - A4249_RS03655 0.29 -0.2 774,228 + A4249_RS03655 0.62 -0.6 774,228 + A4249_RS03655 0.62 -0.3 774,228 + A4249_RS03655 0.62 -0.2 774,228 + A4249_RS03655 0.62 -0.2 774,228 + A4249_RS03655 0.62 -1.3 774,229 - A4249_RS03655 0.62 -0.1 774,229 - A4249_RS03655 0.62 -0.5 774,229 - A4249_RS03655 0.62 +0.6 774,229 - A4249_RS03655 0.62 +0.6 774,229 - A4249_RS03655 0.62 -0.9 774,229 - A4249_RS03655 0.62 +0.8 774,229 - A4249_RS03655 0.62 -1.1 774,534 + -0.5 774,534 + -0.3 774,534 + -0.2 774,534 + +0.4 774,535 - +0.3 774,535 - -0.8 774,535 - -1.7 774,535 - -0.3 774,547 + +1.2 774,689 + -0.1 774,690 + -2.2 774,691 - +0.4 774,691 - +0.6 774,759 + -0.6 774,759 + +0.1 774,759 + +1.0 774,759 + +1.2 774,759 + +0.1 774,759 + -0.3 774,759 + -0.0 774,760 - +1.1 774,760 - -0.1 774,760 - -0.5 774,760 - +0.2 774,760 - -0.3 774,760 - -0.7 774,763 + -0.0 774,763 + -1.2 774,764 - +0.1 774,764 - -0.3 774,764 - -0.6 774,829 + A4249_RS03660 0.15 +0.2 774,829 + A4249_RS03660 0.15 -0.4 774,830 - A4249_RS03660 0.15 -0.3 774,830 - A4249_RS03660 0.15 -0.2 774,830 - A4249_RS03660 0.15 +0.5 774,841 + A4249_RS03660 0.16 -0.3 774,841 + A4249_RS03660 0.16 -0.1 774,841 + A4249_RS03660 0.16 +1.0 774,842 - A4249_RS03660 0.16 +0.2 774,842 - A4249_RS03660 0.16 +0.9 774,842 - A4249_RS03660 0.16 -1.3 774,842 - A4249_RS03660 0.16 -0.0 774,842 - A4249_RS03660 0.16 +0.1 774,843 + A4249_RS03660 0.16 -0.4 774,843 + A4249_RS03660 0.16 -0.7 774,843 + A4249_RS03660 0.16 +0.3 774,843 + A4249_RS03660 0.16 -1.1 774,844 - A4249_RS03660 0.16 -0.3 774,844 - A4249_RS03660 0.16 -0.1 774,844 - A4249_RS03660 0.16 -0.3 774,844 - A4249_RS03660 0.16 -0.5 775,033 + A4249_RS03660 0.35 +0.9 775,033 + A4249_RS03660 0.35 +0.4 775,033 + A4249_RS03660 0.35 -0.1 775,034 - A4249_RS03660 0.35 +0.7 775,034 - A4249_RS03660 0.35 +2.6 775,034 - A4249_RS03660 0.35 -0.2 775,077 + A4249_RS03660 0.39 +0.4 775,332 + A4249_RS03660 0.65 +0.4 775,333 - A4249_RS03660 0.65 +0.3 775,333 - A4249_RS03660 0.65 +0.8
Or see this region's nucleotide sequence