Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02200

Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02190 and A4249_RS02195 are separated by 21 nucleotidesA4249_RS02195 and A4249_RS02200 overlap by 4 nucleotidesA4249_RS02200 and A4249_RS02205 are separated by 126 nucleotides A4249_RS02190: A4249_RS02190 - outer membrane beta-barrel protein, at 461,911 to 463,194 _RS02190 A4249_RS02195: A4249_RS02195 - SDR family NAD(P)-dependent oxidoreductase, at 463,216 to 464,193 _RS02195 A4249_RS02200: A4249_RS02200 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 464,190 to 465,512 _RS02200 A4249_RS02205: A4249_RS02205 - PhoH family protein, at 465,639 to 466,430 _RS02205 Position (kb) 464 465 466Strain fitness (log2 ratio) -2 -1 0 1 2 3at 463.230 kb on - strandat 463.325 kb on + strand, within A4249_RS02195at 465.640 kb on + strandat 465.640 kb on + strandat 465.640 kb on + strandat 465.641 kb on - strandat 465.823 kb on - strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.853 kb on + strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.854 kb on - strand, within A4249_RS02205at 465.914 kb on + strand, within A4249_RS02205at 465.914 kb on + strand, within A4249_RS02205at 465.914 kb on + strand, within A4249_RS02205at 465.914 kb on + strand, within A4249_RS02205at 465.914 kb on + strand, within A4249_RS02205at 465.915 kb on - strand, within A4249_RS02205at 465.915 kb on - strand, within A4249_RS02205at 465.915 kb on - strand, within A4249_RS02205at 465.916 kb on + strand, within A4249_RS02205at 465.916 kb on + strand, within A4249_RS02205at 465.916 kb on + strand, within A4249_RS02205at 465.917 kb on - strand, within A4249_RS02205at 465.917 kb on - strand, within A4249_RS02205at 466.001 kb on - strand, within A4249_RS02205at 466.015 kb on + strand, within A4249_RS02205at 466.015 kb on + strand, within A4249_RS02205at 466.016 kb on - strand, within A4249_RS02205at 466.150 kb on + strand, within A4249_RS02205at 466.150 kb on + strand, within A4249_RS02205at 466.150 kb on + strand, within A4249_RS02205at 466.151 kb on - strand, within A4249_RS02205at 466.151 kb on - strand, within A4249_RS02205at 466.151 kb on - strand, within A4249_RS02205at 466.258 kb on + strand, within A4249_RS02205at 466.259 kb on - strand, within A4249_RS02205at 466.289 kb on - strand, within A4249_RS02205

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
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463,230 - +0.1
463,325 + A4249_RS02195 0.11 +2.9
465,640 + +0.2
465,640 + -0.3
465,640 + +0.6
465,641 - +0.7
465,823 - A4249_RS02205 0.23 -0.7
465,853 + A4249_RS02205 0.27 +0.2
465,853 + A4249_RS02205 0.27 -0.6
465,853 + A4249_RS02205 0.27 -0.3
465,853 + A4249_RS02205 0.27 -0.1
465,853 + A4249_RS02205 0.27 +1.4
465,853 + A4249_RS02205 0.27 -0.1
465,853 + A4249_RS02205 0.27 +1.1
465,853 + A4249_RS02205 0.27 -1.0
465,853 + A4249_RS02205 0.27 -0.4
465,853 + A4249_RS02205 0.27 -0.2
465,853 + A4249_RS02205 0.27 -0.1
465,853 + A4249_RS02205 0.27 -0.1
465,853 + A4249_RS02205 0.27 +1.9
465,853 + A4249_RS02205 0.27 -1.1
465,854 - A4249_RS02205 0.27 -0.3
465,854 - A4249_RS02205 0.27 +0.5
465,854 - A4249_RS02205 0.27 -0.3
465,854 - A4249_RS02205 0.27 -0.3
465,854 - A4249_RS02205 0.27 -0.9
465,854 - A4249_RS02205 0.27 +0.2
465,854 - A4249_RS02205 0.27 +0.1
465,854 - A4249_RS02205 0.27 +0.1
465,854 - A4249_RS02205 0.27 +0.8
465,854 - A4249_RS02205 0.27 +1.9
465,854 - A4249_RS02205 0.27 +0.6
465,854 - A4249_RS02205 0.27 -1.1
465,854 - A4249_RS02205 0.27 +0.7
465,914 + A4249_RS02205 0.35 -0.1
465,914 + A4249_RS02205 0.35 +0.6
465,914 + A4249_RS02205 0.35 -0.4
465,914 + A4249_RS02205 0.35 +0.1
465,914 + A4249_RS02205 0.35 -0.6
465,915 - A4249_RS02205 0.35 -1.7
465,915 - A4249_RS02205 0.35 +0.0
465,915 - A4249_RS02205 0.35 -1.2
465,916 + A4249_RS02205 0.35 +1.0
465,916 + A4249_RS02205 0.35 -0.2
465,916 + A4249_RS02205 0.35 +0.2
465,917 - A4249_RS02205 0.35 +0.2
465,917 - A4249_RS02205 0.35 +0.2
466,001 - A4249_RS02205 0.46 -1.5
466,015 + A4249_RS02205 0.47 -0.4
466,015 + A4249_RS02205 0.47 +0.7
466,016 - A4249_RS02205 0.48 +0.1
466,150 + A4249_RS02205 0.65 +0.2
466,150 + A4249_RS02205 0.65 +0.7
466,150 + A4249_RS02205 0.65 +0.1
466,151 - A4249_RS02205 0.65 -1.8
466,151 - A4249_RS02205 0.65 +0.3
466,151 - A4249_RS02205 0.65 -0.9
466,258 + A4249_RS02205 0.78 -0.7
466,259 - A4249_RS02205 0.78 +0.5
466,289 - A4249_RS02205 0.82 -0.1

Or see this region's nucleotide sequence