Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01740 and A4249_RS01745 are separated by 71 nucleotides A4249_RS01745 and A4249_RS01750 are separated by 139 nucleotides A4249_RS01750 and A4249_RS01755 are separated by 402 nucleotides
A4249_RS01740: A4249_RS01740 - VOC family protein, at 332,725 to 334,047
_RS01740
A4249_RS01745: A4249_RS01745 - peptide-methionine (S)-S-oxide reductase MsrA, at 334,119 to 334,769
_RS01745
A4249_RS01750: A4249_RS01750 - tRNA-Ser, at 334,909 to 334,998
_RS01750
A4249_RS01755: A4249_RS01755 - recombinase family protein, at 335,401 to 336,987
_RS01755
Position (kb) 334
335 Strain fitness (log2 ratio) -2
-1
0
1 at 333.122 kb on + strand, within A4249_RS01740 at 333.122 kb on + strand, within A4249_RS01740 at 333.122 kb on + strand, within A4249_RS01740 at 333.122 kb on + strand, within A4249_RS01740 at 333.123 kb on - strand, within A4249_RS01740 at 333.123 kb on - strand, within A4249_RS01740 at 333.123 kb on - strand, within A4249_RS01740 at 333.123 kb on - strand, within A4249_RS01740 at 333.444 kb on + strand, within A4249_RS01740 at 333.446 kb on + strand, within A4249_RS01740 at 333.446 kb on + strand, within A4249_RS01740 at 333.446 kb on + strand, within A4249_RS01740 at 333.446 kb on + strand, within A4249_RS01740 at 333.446 kb on + strand, within A4249_RS01740 at 333.446 kb on + strand, within A4249_RS01740 at 333.446 kb on + strand, within A4249_RS01740 at 333.446 kb on + strand, within A4249_RS01740 at 333.446 kb on + strand, within A4249_RS01740 at 333.446 kb on + strand, within A4249_RS01740 at 333.446 kb on + strand, within A4249_RS01740 at 333.447 kb on - strand, within A4249_RS01740 at 333.447 kb on - strand, within A4249_RS01740 at 333.447 kb on - strand, within A4249_RS01740 at 333.447 kb on - strand, within A4249_RS01740 at 333.447 kb on - strand, within A4249_RS01740 at 333.447 kb on - strand, within A4249_RS01740 at 333.706 kb on + strand, within A4249_RS01740 at 333.706 kb on + strand, within A4249_RS01740 at 333.706 kb on + strand, within A4249_RS01740 at 333.707 kb on - strand, within A4249_RS01740 at 333.758 kb on + strand, within A4249_RS01740 at 333.758 kb on + strand, within A4249_RS01740 at 333.758 kb on + strand, within A4249_RS01740 at 333.758 kb on + strand, within A4249_RS01740 at 333.758 kb on + strand, within A4249_RS01740 at 333.758 kb on + strand, within A4249_RS01740 at 333.758 kb on + strand, within A4249_RS01740 at 333.758 kb on + strand, within A4249_RS01740 at 333.758 kb on + strand, within A4249_RS01740 at 333.758 kb on + strand, within A4249_RS01740 at 333.759 kb on - strand, within A4249_RS01740 at 333.759 kb on - strand, within A4249_RS01740 at 333.759 kb on - strand, within A4249_RS01740 at 333.759 kb on - strand, within A4249_RS01740 at 333.759 kb on - strand, within A4249_RS01740 at 333.759 kb on - strand, within A4249_RS01740 at 333.759 kb on - strand, within A4249_RS01740 at 333.759 kb on - strand, within A4249_RS01740 at 333.759 kb on - strand, within A4249_RS01740 at 333.761 kb on + strand, within A4249_RS01740 at 333.761 kb on + strand, within A4249_RS01740 at 333.761 kb on + strand, within A4249_RS01740 at 333.761 kb on + strand, within A4249_RS01740 at 333.761 kb on + strand, within A4249_RS01740 at 333.761 kb on + strand, within A4249_RS01740 at 333.761 kb on + strand, within A4249_RS01740 at 333.761 kb on + strand, within A4249_RS01740 at 333.761 kb on + strand, within A4249_RS01740 at 333.761 kb on + strand, within A4249_RS01740 at 333.762 kb on - strand, within A4249_RS01740 at 333.762 kb on - strand, within A4249_RS01740 at 333.962 kb on + strand at 333.962 kb on + strand at 333.962 kb on + strand at 333.962 kb on + strand at 333.962 kb on + strand at 333.962 kb on + strand at 333.962 kb on + strand at 333.963 kb on - strand at 333.963 kb on - strand at 333.983 kb on + strand at 333.983 kb on + strand at 333.983 kb on + strand at 333.983 kb on + strand at 333.983 kb on + strand at 333.983 kb on + strand at 333.984 kb on - strand at 333.984 kb on - strand at 333.984 kb on - strand at 333.984 kb on - strand at 333.984 kb on - strand at 333.984 kb on - strand at 334.074 kb on + strand at 334.074 kb on + strand at 334.074 kb on + strand at 334.075 kb on - strand at 334.075 kb on - strand at 334.115 kb on + strand at 334.116 kb on - strand at 334.116 kb on - strand at 334.178 kb on - strand at 334.201 kb on + strand, within A4249_RS01745 at 334.202 kb on - strand, within A4249_RS01745 at 334.231 kb on + strand, within A4249_RS01745 at 334.231 kb on + strand, within A4249_RS01745 at 334.232 kb on - strand, within A4249_RS01745 at 334.297 kb on + strand, within A4249_RS01745 at 334.297 kb on + strand, within A4249_RS01745 at 334.297 kb on + strand, within A4249_RS01745 at 334.346 kb on + strand, within A4249_RS01745 at 334.346 kb on + strand, within A4249_RS01745 at 334.347 kb on - strand, within A4249_RS01745 at 334.348 kb on + strand, within A4249_RS01745 at 334.348 kb on + strand, within A4249_RS01745 at 334.348 kb on + strand, within A4249_RS01745 at 334.348 kb on + strand, within A4249_RS01745 at 334.348 kb on + strand, within A4249_RS01745 at 334.348 kb on + strand, within A4249_RS01745 at 334.348 kb on + strand, within A4249_RS01745 at 334.348 kb on + strand, within A4249_RS01745 at 334.348 kb on + strand, within A4249_RS01745 at 334.348 kb on + strand, within A4249_RS01745 at 334.348 kb on + strand, within A4249_RS01745 at 334.349 kb on - strand, within A4249_RS01745 at 334.349 kb on - strand, within A4249_RS01745 at 334.349 kb on - strand, within A4249_RS01745 at 334.349 kb on - strand, within A4249_RS01745 at 334.349 kb on - strand, within A4249_RS01745 at 334.363 kb on + strand, within A4249_RS01745 at 334.363 kb on + strand, within A4249_RS01745 at 334.363 kb on + strand, within A4249_RS01745 at 334.363 kb on + strand, within A4249_RS01745 at 334.363 kb on + strand, within A4249_RS01745 at 334.363 kb on + strand, within A4249_RS01745 at 334.363 kb on + strand, within A4249_RS01745 at 334.364 kb on - strand, within A4249_RS01745 at 334.364 kb on - strand, within A4249_RS01745 at 334.364 kb on - strand, within A4249_RS01745 at 334.364 kb on - strand, within A4249_RS01745 at 334.364 kb on - strand, within A4249_RS01745 at 334.444 kb on + strand, within A4249_RS01745 at 334.448 kb on + strand, within A4249_RS01745 at 334.448 kb on + strand, within A4249_RS01745 at 334.448 kb on + strand, within A4249_RS01745 at 334.449 kb on - strand, within A4249_RS01745 at 334.449 kb on - strand, within A4249_RS01745 at 334.449 kb on - strand, within A4249_RS01745 at 334.449 kb on - strand, within A4249_RS01745 at 334.519 kb on + strand, within A4249_RS01745 at 334.519 kb on + strand, within A4249_RS01745 at 334.519 kb on + strand, within A4249_RS01745 at 334.519 kb on + strand, within A4249_RS01745 at 334.519 kb on + strand, within A4249_RS01745 at 334.519 kb on + strand, within A4249_RS01745 at 334.519 kb on + strand, within A4249_RS01745 at 334.519 kb on + strand, within A4249_RS01745 at 334.519 kb on + strand, within A4249_RS01745 at 334.520 kb on - strand, within A4249_RS01745 at 334.520 kb on - strand, within A4249_RS01745 at 334.520 kb on - strand, within A4249_RS01745 at 334.520 kb on - strand, within A4249_RS01745 at 334.520 kb on - strand, within A4249_RS01745 at 334.651 kb on + strand, within A4249_RS01745 at 334.681 kb on + strand, within A4249_RS01745 at 334.681 kb on + strand, within A4249_RS01745 at 334.681 kb on + strand, within A4249_RS01745 at 334.681 kb on + strand, within A4249_RS01745 at 334.681 kb on + strand, within A4249_RS01745 at 334.681 kb on + strand, within A4249_RS01745 at 334.681 kb on + strand, within A4249_RS01745 at 334.681 kb on + strand, within A4249_RS01745 at 334.682 kb on - strand, within A4249_RS01745 at 334.682 kb on - strand, within A4249_RS01745 at 334.682 kb on - strand, within A4249_RS01745 at 334.682 kb on - strand, within A4249_RS01745 at 334.682 kb on - strand, within A4249_RS01745 at 334.682 kb on - strand, within A4249_RS01745 at 334.682 kb on - strand, within A4249_RS01745 at 334.682 kb on - strand, within A4249_RS01745 at 334.807 kb on + strand at 334.807 kb on + strand at 335.029 kb on - strand at 335.038 kb on + strand at 335.038 kb on + strand at 335.038 kb on + strand at 335.038 kb on + strand at 335.039 kb on - strand at 335.039 kb on - strand at 335.039 kb on - strand at 335.192 kb on + strand at 335.192 kb on + strand at 335.192 kb on + strand at 335.192 kb on + strand at 335.192 kb on + strand at 335.192 kb on + strand at 335.192 kb on + strand at 335.192 kb on + strand at 335.192 kb on + strand at 335.193 kb on - strand at 335.193 kb on - strand at 335.193 kb on - strand at 335.193 kb on - strand at 335.193 kb on - strand at 335.193 kb on - strand at 335.193 kb on - strand at 335.193 kb on - strand at 335.193 kb on - strand at 335.196 kb on + strand at 335.196 kb on + strand at 335.196 kb on + strand at 335.196 kb on + strand at 335.196 kb on + strand at 335.197 kb on - strand at 335.197 kb on - strand at 335.197 kb on - strand at 335.197 kb on - strand at 335.303 kb on + strand at 335.303 kb on + strand at 335.311 kb on + strand at 335.311 kb on + strand at 335.312 kb on - strand at 335.327 kb on + strand at 335.327 kb on + strand at 335.328 kb on - strand at 335.328 kb on - strand at 335.328 kb on - strand at 335.564 kb on + strand, within A4249_RS01755 at 335.564 kb on + strand, within A4249_RS01755 at 335.564 kb on + strand, within A4249_RS01755 at 335.564 kb on + strand, within A4249_RS01755 at 335.564 kb on + strand, within A4249_RS01755 at 335.564 kb on + strand, within A4249_RS01755 at 335.564 kb on + strand, within A4249_RS01755 at 335.564 kb on + strand, within A4249_RS01755 at 335.564 kb on + strand, within A4249_RS01755 at 335.565 kb on - strand, within A4249_RS01755 at 335.565 kb on - strand, within A4249_RS01755 at 335.565 kb on - strand, within A4249_RS01755 at 335.565 kb on - strand, within A4249_RS01755 at 335.565 kb on - strand, within A4249_RS01755 at 335.565 kb on - strand, within A4249_RS01755
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C) remove 333,122 + A4249_RS01740 0.30 -1.3 333,122 + A4249_RS01740 0.30 +0.3 333,122 + A4249_RS01740 0.30 -1.0 333,122 + A4249_RS01740 0.30 +0.6 333,123 - A4249_RS01740 0.30 -1.2 333,123 - A4249_RS01740 0.30 +0.0 333,123 - A4249_RS01740 0.30 -0.4 333,123 - A4249_RS01740 0.30 +0.3 333,444 + A4249_RS01740 0.54 -0.1 333,446 + A4249_RS01740 0.54 +0.4 333,446 + A4249_RS01740 0.54 +0.9 333,446 + A4249_RS01740 0.54 +0.7 333,446 + A4249_RS01740 0.54 -0.6 333,446 + A4249_RS01740 0.54 -0.6 333,446 + A4249_RS01740 0.54 -0.2 333,446 + A4249_RS01740 0.54 -0.4 333,446 + A4249_RS01740 0.54 +1.6 333,446 + A4249_RS01740 0.54 +0.5 333,446 + A4249_RS01740 0.54 -1.1 333,446 + A4249_RS01740 0.54 +0.2 333,447 - A4249_RS01740 0.55 +0.2 333,447 - A4249_RS01740 0.55 -0.5 333,447 - A4249_RS01740 0.55 -0.1 333,447 - A4249_RS01740 0.55 +0.0 333,447 - A4249_RS01740 0.55 -0.5 333,447 - A4249_RS01740 0.55 -0.9 333,706 + A4249_RS01740 0.74 -1.3 333,706 + A4249_RS01740 0.74 +0.9 333,706 + A4249_RS01740 0.74 +0.1 333,707 - A4249_RS01740 0.74 +0.3 333,758 + A4249_RS01740 0.78 +0.4 333,758 + A4249_RS01740 0.78 -0.9 333,758 + A4249_RS01740 0.78 -0.8 333,758 + A4249_RS01740 0.78 -0.1 333,758 + A4249_RS01740 0.78 +1.4 333,758 + A4249_RS01740 0.78 +0.3 333,758 + A4249_RS01740 0.78 -0.7 333,758 + A4249_RS01740 0.78 -1.8 333,758 + A4249_RS01740 0.78 +0.0 333,758 + A4249_RS01740 0.78 -1.1 333,759 - A4249_RS01740 0.78 -0.4 333,759 - A4249_RS01740 0.78 -2.2 333,759 - A4249_RS01740 0.78 +0.1 333,759 - A4249_RS01740 0.78 -0.4 333,759 - A4249_RS01740 0.78 +0.4 333,759 - A4249_RS01740 0.78 +0.4 333,759 - A4249_RS01740 0.78 -0.6 333,759 - A4249_RS01740 0.78 -0.2 333,759 - A4249_RS01740 0.78 -0.7 333,761 + A4249_RS01740 0.78 -0.7 333,761 + A4249_RS01740 0.78 -0.1 333,761 + A4249_RS01740 0.78 -0.5 333,761 + A4249_RS01740 0.78 +0.6 333,761 + A4249_RS01740 0.78 +0.6 333,761 + A4249_RS01740 0.78 +0.1 333,761 + A4249_RS01740 0.78 -0.5 333,761 + A4249_RS01740 0.78 -0.3 333,761 + A4249_RS01740 0.78 -0.2 333,761 + A4249_RS01740 0.78 +0.9 333,762 - A4249_RS01740 0.78 -0.4 333,762 - A4249_RS01740 0.78 +0.4 333,962 + -0.3 333,962 + -0.8 333,962 + -0.2 333,962 + -0.4 333,962 + -1.3 333,962 + +0.1 333,962 + -1.0 333,963 - -0.3 333,963 - +0.1 333,983 + -1.2 333,983 + +0.3 333,983 + +1.0 333,983 + -0.6 333,983 + +0.3 333,983 + -0.3 333,984 - -0.7 333,984 - -0.3 333,984 - -1.1 333,984 - -0.3 333,984 - +0.3 333,984 - -0.3 334,074 + +0.5 334,074 + +0.2 334,074 + -0.2 334,075 - +0.8 334,075 - -0.2 334,115 + -0.0 334,116 - +0.3 334,116 - +0.8 334,178 - -0.2 334,201 + A4249_RS01745 0.13 -0.7 334,202 - A4249_RS01745 0.13 +0.4 334,231 + A4249_RS01745 0.17 +0.2 334,231 + A4249_RS01745 0.17 +0.5 334,232 - A4249_RS01745 0.17 -0.2 334,297 + A4249_RS01745 0.27 -1.3 334,297 + A4249_RS01745 0.27 -0.5 334,297 + A4249_RS01745 0.27 -0.5 334,346 + A4249_RS01745 0.35 +0.5 334,346 + A4249_RS01745 0.35 +0.5 334,347 - A4249_RS01745 0.35 -0.5 334,348 + A4249_RS01745 0.35 -0.5 334,348 + A4249_RS01745 0.35 -0.6 334,348 + A4249_RS01745 0.35 -0.3 334,348 + A4249_RS01745 0.35 +0.1 334,348 + A4249_RS01745 0.35 +0.3 334,348 + A4249_RS01745 0.35 -0.5 334,348 + A4249_RS01745 0.35 +0.5 334,348 + A4249_RS01745 0.35 +0.0 334,348 + A4249_RS01745 0.35 +0.5 334,348 + A4249_RS01745 0.35 -0.5 334,348 + A4249_RS01745 0.35 -0.2 334,349 - A4249_RS01745 0.35 +0.1 334,349 - A4249_RS01745 0.35 +0.9 334,349 - A4249_RS01745 0.35 -1.1 334,349 - A4249_RS01745 0.35 -0.1 334,349 - A4249_RS01745 0.35 -0.8 334,363 + A4249_RS01745 0.37 -0.2 334,363 + A4249_RS01745 0.37 -0.0 334,363 + A4249_RS01745 0.37 -0.5 334,363 + A4249_RS01745 0.37 -0.2 334,363 + A4249_RS01745 0.37 +1.7 334,363 + A4249_RS01745 0.37 +0.7 334,363 + A4249_RS01745 0.37 -1.1 334,364 - A4249_RS01745 0.38 +0.2 334,364 - A4249_RS01745 0.38 -1.5 334,364 - A4249_RS01745 0.38 -1.7 334,364 - A4249_RS01745 0.38 +0.4 334,364 - A4249_RS01745 0.38 -0.1 334,444 + A4249_RS01745 0.50 +0.1 334,448 + A4249_RS01745 0.51 +0.5 334,448 + A4249_RS01745 0.51 +0.7 334,448 + A4249_RS01745 0.51 -1.2 334,449 - A4249_RS01745 0.51 -0.7 334,449 - A4249_RS01745 0.51 -0.7 334,449 - A4249_RS01745 0.51 -0.6 334,449 - A4249_RS01745 0.51 -0.7 334,519 + A4249_RS01745 0.61 -0.2 334,519 + A4249_RS01745 0.61 +0.1 334,519 + A4249_RS01745 0.61 +0.1 334,519 + A4249_RS01745 0.61 +0.9 334,519 + A4249_RS01745 0.61 -0.3 334,519 + A4249_RS01745 0.61 +1.4 334,519 + A4249_RS01745 0.61 +0.4 334,519 + A4249_RS01745 0.61 -0.5 334,519 + A4249_RS01745 0.61 -1.1 334,520 - A4249_RS01745 0.62 +0.2 334,520 - A4249_RS01745 0.62 -0.1 334,520 - A4249_RS01745 0.62 +0.5 334,520 - A4249_RS01745 0.62 +0.1 334,520 - A4249_RS01745 0.62 -0.5 334,651 + A4249_RS01745 0.82 +0.2 334,681 + A4249_RS01745 0.86 +0.3 334,681 + A4249_RS01745 0.86 -1.1 334,681 + A4249_RS01745 0.86 -0.2 334,681 + A4249_RS01745 0.86 +0.4 334,681 + A4249_RS01745 0.86 -1.0 334,681 + A4249_RS01745 0.86 +0.5 334,681 + A4249_RS01745 0.86 -0.5 334,681 + A4249_RS01745 0.86 +0.2 334,682 - A4249_RS01745 0.86 -0.0 334,682 - A4249_RS01745 0.86 -0.8 334,682 - A4249_RS01745 0.86 -1.1 334,682 - A4249_RS01745 0.86 +0.4 334,682 - A4249_RS01745 0.86 -1.9 334,682 - A4249_RS01745 0.86 +0.2 334,682 - A4249_RS01745 0.86 -0.3 334,682 - A4249_RS01745 0.86 -1.4 334,807 + -1.5 334,807 + +1.6 335,029 - +0.1 335,038 + -0.7 335,038 + +0.3 335,038 + -0.5 335,038 + -0.8 335,039 - +0.5 335,039 - +0.2 335,039 - -0.4 335,192 + +0.4 335,192 + -0.5 335,192 + -1.0 335,192 + -0.9 335,192 + +0.2 335,192 + +0.5 335,192 + +1.7 335,192 + +0.2 335,192 + +0.3 335,193 - -0.5 335,193 - -1.3 335,193 - -0.3 335,193 - -0.0 335,193 - -0.6 335,193 - -0.0 335,193 - -0.2 335,193 - +0.2 335,193 - -0.5 335,196 + -0.3 335,196 + +0.2 335,196 + +0.3 335,196 + -0.6 335,196 + -0.5 335,197 - -0.7 335,197 - -1.3 335,197 - -0.1 335,197 - -0.0 335,303 + -0.4 335,303 + -1.1 335,311 + -0.2 335,311 + +0.2 335,312 - -2.1 335,327 + -0.3 335,327 + -0.1 335,328 - -0.2 335,328 - -0.7 335,328 - -0.4 335,564 + A4249_RS01755 0.10 +0.2 335,564 + A4249_RS01755 0.10 -1.1 335,564 + A4249_RS01755 0.10 +1.3 335,564 + A4249_RS01755 0.10 -0.2 335,564 + A4249_RS01755 0.10 +0.8 335,564 + A4249_RS01755 0.10 -0.2 335,564 + A4249_RS01755 0.10 -0.2 335,564 + A4249_RS01755 0.10 -0.2 335,564 + A4249_RS01755 0.10 +0.1 335,565 - A4249_RS01755 0.10 +0.1 335,565 - A4249_RS01755 0.10 -0.8 335,565 - A4249_RS01755 0.10 -0.2 335,565 - A4249_RS01755 0.10 -1.3 335,565 - A4249_RS01755 0.10 +0.1 335,565 - A4249_RS01755 0.10 -0.3
Or see this region's nucleotide sequence