Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01605 and A4249_RS01610 overlap by 1 nucleotides A4249_RS01610 and A4249_RS01615 are separated by 46 nucleotides A4249_RS01615 and A4249_RS01620 overlap by 4 nucleotides
A4249_RS01605: A4249_RS01605 - MFS transporter, at 303,726 to 305,423
_RS01605
A4249_RS01610: A4249_RS01610 - TetR/AcrR family transcriptional regulator, at 305,423 to 305,998
_RS01610
A4249_RS01615: A4249_RS01615 - GNAT family N-acetyltransferase, at 306,045 to 306,554
_RS01615
A4249_RS01620: A4249_RS01620 - S46 family peptidase, at 306,551 to 308,629
_RS01620
Position (kb) 306
307 Strain fitness (log2 ratio) -1
0
1 at 305.116 kb on + strand, within A4249_RS01605 at 305.116 kb on + strand, within A4249_RS01605 at 305.300 kb on - strand at 305.386 kb on + strand at 305.386 kb on + strand at 305.386 kb on + strand at 305.386 kb on + strand at 305.386 kb on + strand at 305.386 kb on + strand at 305.386 kb on + strand at 305.386 kb on + strand at 305.387 kb on - strand at 305.387 kb on - strand at 305.387 kb on - strand at 305.387 kb on - strand at 305.387 kb on - strand at 305.387 kb on - strand at 305.387 kb on - strand at 305.387 kb on - strand at 305.844 kb on + strand, within A4249_RS01610 at 305.844 kb on + strand, within A4249_RS01610 at 306.046 kb on + strand at 306.046 kb on + strand at 306.047 kb on - strand at 306.145 kb on + strand, within A4249_RS01615 at 306.146 kb on - strand, within A4249_RS01615 at 306.146 kb on - strand, within A4249_RS01615 at 306.298 kb on + strand, within A4249_RS01615 at 306.298 kb on + strand, within A4249_RS01615 at 306.298 kb on + strand, within A4249_RS01615 at 306.482 kb on - strand, within A4249_RS01615 at 306.594 kb on + strand at 306.594 kb on + strand at 306.595 kb on - strand at 306.595 kb on - strand at 306.595 kb on - strand at 306.595 kb on - strand at 306.595 kb on - strand at 306.595 kb on - strand at 306.595 kb on - strand at 306.663 kb on + strand at 306.663 kb on + strand at 306.664 kb on - strand at 306.669 kb on + strand at 306.669 kb on + strand at 306.670 kb on - strand at 306.670 kb on - strand at 306.670 kb on - strand at 306.670 kb on - strand at 306.670 kb on - strand at 306.942 kb on + strand, within A4249_RS01620 at 306.942 kb on + strand, within A4249_RS01620 at 306.942 kb on + strand, within A4249_RS01620 at 306.942 kb on + strand, within A4249_RS01620 at 306.943 kb on - strand, within A4249_RS01620 at 306.943 kb on - strand, within A4249_RS01620 at 306.943 kb on - strand, within A4249_RS01620 at 306.943 kb on - strand, within A4249_RS01620 at 306.943 kb on - strand, within A4249_RS01620 at 306.990 kb on + strand, within A4249_RS01620 at 306.990 kb on + strand, within A4249_RS01620 at 307.051 kb on + strand, within A4249_RS01620 at 307.051 kb on + strand, within A4249_RS01620 at 307.051 kb on + strand, within A4249_RS01620 at 307.051 kb on + strand, within A4249_RS01620 at 307.051 kb on + strand, within A4249_RS01620 at 307.052 kb on - strand, within A4249_RS01620 at 307.052 kb on - strand, within A4249_RS01620 at 307.104 kb on + strand, within A4249_RS01620 at 307.104 kb on + strand, within A4249_RS01620 at 307.105 kb on - strand, within A4249_RS01620 at 307.105 kb on - strand, within A4249_RS01620 at 307.105 kb on - strand, within A4249_RS01620 at 307.105 kb on - strand, within A4249_RS01620 at 307.105 kb on - strand, within A4249_RS01620 at 307.254 kb on + strand, within A4249_RS01620 at 307.254 kb on + strand, within A4249_RS01620 at 307.530 kb on + strand, within A4249_RS01620 at 307.530 kb on + strand, within A4249_RS01620 at 307.530 kb on + strand, within A4249_RS01620 at 307.531 kb on - strand, within A4249_RS01620 at 307.531 kb on - strand, within A4249_RS01620 at 307.531 kb on - strand, within A4249_RS01620
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C) remove 305,116 + A4249_RS01605 0.82 -0.6 305,116 + A4249_RS01605 0.82 +0.7 305,300 - +0.0 305,386 + -0.4 305,386 + -0.3 305,386 + -0.1 305,386 + +0.5 305,386 + +0.2 305,386 + -0.7 305,386 + +0.1 305,386 + +0.6 305,387 - -0.3 305,387 - -0.1 305,387 - -1.7 305,387 - -0.2 305,387 - -1.2 305,387 - -0.3 305,387 - -0.4 305,387 - +0.8 305,844 + A4249_RS01610 0.73 -1.3 305,844 + A4249_RS01610 0.73 +0.7 306,046 + -0.5 306,046 + -0.6 306,047 - -1.6 306,145 + A4249_RS01615 0.20 +0.3 306,146 - A4249_RS01615 0.20 +0.2 306,146 - A4249_RS01615 0.20 +0.7 306,298 + A4249_RS01615 0.50 -0.6 306,298 + A4249_RS01615 0.50 +0.2 306,298 + A4249_RS01615 0.50 -1.1 306,482 - A4249_RS01615 0.86 +0.4 306,594 + -0.3 306,594 + +1.3 306,595 - +0.5 306,595 - -1.7 306,595 - +0.4 306,595 - -1.1 306,595 - +0.8 306,595 - +0.7 306,595 - -0.1 306,663 + -0.2 306,663 + +0.1 306,664 - +1.2 306,669 + -0.3 306,669 + -0.1 306,670 - -0.4 306,670 - +0.5 306,670 - -1.3 306,670 - +0.2 306,670 - -0.3 306,942 + A4249_RS01620 0.19 +1.1 306,942 + A4249_RS01620 0.19 -0.1 306,942 + A4249_RS01620 0.19 -0.8 306,942 + A4249_RS01620 0.19 -0.3 306,943 - A4249_RS01620 0.19 +0.6 306,943 - A4249_RS01620 0.19 -1.4 306,943 - A4249_RS01620 0.19 +0.2 306,943 - A4249_RS01620 0.19 +1.0 306,943 - A4249_RS01620 0.19 +0.4 306,990 + A4249_RS01620 0.21 -0.2 306,990 + A4249_RS01620 0.21 +0.0 307,051 + A4249_RS01620 0.24 -0.1 307,051 + A4249_RS01620 0.24 -0.5 307,051 + A4249_RS01620 0.24 -0.5 307,051 + A4249_RS01620 0.24 -0.2 307,051 + A4249_RS01620 0.24 -0.3 307,052 - A4249_RS01620 0.24 -1.1 307,052 - A4249_RS01620 0.24 +0.2 307,104 + A4249_RS01620 0.27 -1.3 307,104 + A4249_RS01620 0.27 +0.4 307,105 - A4249_RS01620 0.27 +0.6 307,105 - A4249_RS01620 0.27 +0.2 307,105 - A4249_RS01620 0.27 -1.4 307,105 - A4249_RS01620 0.27 -0.7 307,105 - A4249_RS01620 0.27 -0.1 307,254 + A4249_RS01620 0.34 -1.1 307,254 + A4249_RS01620 0.34 +0.1 307,530 + A4249_RS01620 0.47 +0.4 307,530 + A4249_RS01620 0.47 -0.6 307,530 + A4249_RS01620 0.47 -0.3 307,531 - A4249_RS01620 0.47 -0.6 307,531 - A4249_RS01620 0.47 -0.1 307,531 - A4249_RS01620 0.47 -0.3
Or see this region's nucleotide sequence