Experiment: HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00520 and A4249_RS00525 are separated by 97 nucleotides A4249_RS00525 and A4249_RS00530 are separated by 162 nucleotides
A4249_RS00520: A4249_RS00520 - type I methionyl aminopeptidase, at 86,170 to 86,988
_RS00520
A4249_RS00525: A4249_RS00525 - molybdopterin-binding protein, at 87,086 to 87,853
_RS00525
A4249_RS00530: A4249_RS00530 - outer membrane protein transport protein, at 88,016 to 89,380
_RS00530
Position (kb) 87
88 Strain fitness (log2 ratio) -2
-1
0
1
2 at 86.103 kb on + strand at 86.115 kb on - strand at 86.985 kb on - strand at 87.047 kb on + strand at 87.048 kb on + strand at 87.048 kb on + strand at 87.049 kb on - strand at 87.049 kb on - strand at 87.049 kb on - strand at 87.049 kb on - strand at 87.050 kb on + strand at 87.050 kb on + strand at 87.050 kb on + strand at 87.050 kb on + strand at 87.050 kb on + strand at 87.050 kb on + strand at 87.050 kb on + strand at 87.050 kb on + strand at 87.050 kb on + strand at 87.050 kb on + strand at 87.051 kb on - strand at 87.051 kb on - strand at 87.051 kb on - strand at 87.051 kb on - strand at 87.051 kb on - strand at 87.051 kb on - strand at 87.051 kb on - strand at 87.299 kb on + strand, within A4249_RS00525 at 87.299 kb on + strand, within A4249_RS00525 at 87.299 kb on + strand, within A4249_RS00525 at 87.299 kb on + strand, within A4249_RS00525 at 87.299 kb on + strand, within A4249_RS00525 at 87.299 kb on + strand, within A4249_RS00525 at 87.299 kb on + strand, within A4249_RS00525 at 87.300 kb on - strand, within A4249_RS00525 at 87.300 kb on - strand, within A4249_RS00525 at 87.300 kb on - strand, within A4249_RS00525 at 87.300 kb on - strand, within A4249_RS00525 at 87.300 kb on - strand, within A4249_RS00525 at 87.300 kb on - strand, within A4249_RS00525 at 87.300 kb on - strand, within A4249_RS00525 at 87.300 kb on - strand, within A4249_RS00525 at 87.300 kb on - strand, within A4249_RS00525 at 87.300 kb on - strand, within A4249_RS00525 at 87.422 kb on + strand, within A4249_RS00525 at 87.423 kb on - strand, within A4249_RS00525 at 87.713 kb on + strand, within A4249_RS00525 at 87.713 kb on + strand, within A4249_RS00525 at 87.714 kb on - strand, within A4249_RS00525 at 87.714 kb on - strand, within A4249_RS00525 at 87.823 kb on + strand at 87.828 kb on + strand at 87.828 kb on + strand at 87.829 kb on - strand at 87.984 kb on + strand at 88.000 kb on + strand at 88.001 kb on - strand at 88.001 kb on - strand at 88.001 kb on - strand at 88.001 kb on - strand at 88.001 kb on - strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.004 kb on + strand at 88.005 kb on - strand at 88.005 kb on - strand at 88.005 kb on - strand at 88.005 kb on - strand at 88.005 kb on - strand at 88.005 kb on - strand at 88.005 kb on - strand at 88.005 kb on - strand at 88.005 kb on - strand at 88.005 kb on - strand at 88.010 kb on + strand at 88.010 kb on + strand at 88.010 kb on + strand at 88.011 kb on - strand at 88.011 kb on - strand at 88.109 kb on + strand at 88.109 kb on + strand at 88.109 kb on + strand at 88.109 kb on + strand at 88.109 kb on + strand at 88.109 kb on + strand at 88.109 kb on + strand at 88.109 kb on + strand at 88.109 kb on + strand at 88.110 kb on - strand at 88.110 kb on - strand at 88.110 kb on - strand at 88.110 kb on - strand at 88.110 kb on - strand at 88.110 kb on - strand at 88.110 kb on - strand at 88.110 kb on - strand at 88.229 kb on + strand, within A4249_RS00530 at 88.229 kb on + strand, within A4249_RS00530 at 88.229 kb on + strand, within A4249_RS00530 at 88.229 kb on + strand, within A4249_RS00530 at 88.229 kb on + strand, within A4249_RS00530 at 88.229 kb on + strand, within A4249_RS00530 at 88.230 kb on - strand, within A4249_RS00530 at 88.230 kb on - strand, within A4249_RS00530 at 88.230 kb on - strand, within A4249_RS00530 at 88.230 kb on - strand, within A4249_RS00530 at 88.230 kb on - strand, within A4249_RS00530 at 88.230 kb on - strand, within A4249_RS00530 at 88.230 kb on - strand, within A4249_RS00530 at 88.292 kb on + strand, within A4249_RS00530 at 88.292 kb on + strand, within A4249_RS00530 at 88.292 kb on + strand, within A4249_RS00530 at 88.292 kb on + strand, within A4249_RS00530 at 88.292 kb on + strand, within A4249_RS00530 at 88.292 kb on + strand, within A4249_RS00530 at 88.292 kb on + strand, within A4249_RS00530 at 88.292 kb on + strand, within A4249_RS00530 at 88.292 kb on + strand, within A4249_RS00530 at 88.293 kb on - strand, within A4249_RS00530 at 88.293 kb on - strand, within A4249_RS00530 at 88.293 kb on - strand, within A4249_RS00530 at 88.293 kb on - strand, within A4249_RS00530 at 88.293 kb on - strand, within A4249_RS00530 at 88.293 kb on - strand, within A4249_RS00530 at 88.470 kb on - strand, within A4249_RS00530 at 88.470 kb on - strand, within A4249_RS00530 at 88.470 kb on - strand, within A4249_RS00530 at 88.487 kb on + strand, within A4249_RS00530 at 88.487 kb on + strand, within A4249_RS00530 at 88.488 kb on - strand, within A4249_RS00530 at 88.488 kb on - strand, within A4249_RS00530 at 88.488 kb on - strand, within A4249_RS00530 at 88.488 kb on - strand, within A4249_RS00530 at 88.488 kb on - strand, within A4249_RS00530 at 88.488 kb on - strand, within A4249_RS00530 at 88.488 kb on - strand, within A4249_RS00530 at 88.511 kb on + strand, within A4249_RS00530 at 88.613 kb on + strand, within A4249_RS00530 at 88.614 kb on - strand, within A4249_RS00530 at 88.737 kb on - strand, within A4249_RS00530 at 88.793 kb on + strand, within A4249_RS00530 at 88.793 kb on + strand, within A4249_RS00530 at 88.830 kb on + strand, within A4249_RS00530 at 88.831 kb on - strand, within A4249_RS00530
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm (C) remove 86,103 + +0.2 86,115 - -0.7 86,985 - +0.0 87,047 + +0.1 87,048 + -0.7 87,048 + +0.4 87,049 - +1.3 87,049 - +0.8 87,049 - +0.1 87,049 - +0.4 87,050 + +0.4 87,050 + -0.0 87,050 + -0.9 87,050 + +1.4 87,050 + +0.0 87,050 + -0.2 87,050 + -0.5 87,050 + -0.9 87,050 + -0.5 87,050 + +0.8 87,051 - +0.1 87,051 - -0.2 87,051 - +1.0 87,051 - -1.4 87,051 - +0.0 87,051 - -0.2 87,051 - -0.6 87,299 + A4249_RS00525 0.28 +0.6 87,299 + A4249_RS00525 0.28 +0.3 87,299 + A4249_RS00525 0.28 +1.5 87,299 + A4249_RS00525 0.28 -1.0 87,299 + A4249_RS00525 0.28 +0.3 87,299 + A4249_RS00525 0.28 +0.6 87,299 + A4249_RS00525 0.28 +0.9 87,300 - A4249_RS00525 0.28 +0.5 87,300 - A4249_RS00525 0.28 +0.0 87,300 - A4249_RS00525 0.28 +0.7 87,300 - A4249_RS00525 0.28 -1.2 87,300 - A4249_RS00525 0.28 +0.0 87,300 - A4249_RS00525 0.28 +0.0 87,300 - A4249_RS00525 0.28 -0.9 87,300 - A4249_RS00525 0.28 -0.5 87,300 - A4249_RS00525 0.28 +1.0 87,300 - A4249_RS00525 0.28 -1.7 87,422 + A4249_RS00525 0.44 -0.4 87,423 - A4249_RS00525 0.44 -0.2 87,713 + A4249_RS00525 0.82 +0.4 87,713 + A4249_RS00525 0.82 -0.1 87,714 - A4249_RS00525 0.82 -0.2 87,714 - A4249_RS00525 0.82 +0.4 87,823 + +0.5 87,828 + -0.5 87,828 + -0.1 87,829 - +0.4 87,984 + +0.2 88,000 + -1.9 88,001 - +0.4 88,001 - +0.1 88,001 - -0.1 88,001 - -0.5 88,001 - +0.2 88,004 + -1.0 88,004 + -1.2 88,004 + +0.3 88,004 + -1.1 88,004 + +0.1 88,004 + +1.1 88,004 + +0.6 88,004 + -0.9 88,004 + +0.2 88,004 + -0.7 88,004 + -0.2 88,004 + -0.7 88,004 + -0.4 88,004 + -0.6 88,004 + +0.1 88,004 + +0.2 88,004 + +0.0 88,005 - -0.9 88,005 - -0.5 88,005 - -1.0 88,005 - +1.8 88,005 - +0.7 88,005 - +0.1 88,005 - -0.1 88,005 - -0.3 88,005 - -0.3 88,005 - -0.9 88,010 + -0.1 88,010 + -0.7 88,010 + -0.2 88,011 - +1.4 88,011 - -0.6 88,109 + +0.3 88,109 + +1.4 88,109 + +0.3 88,109 + +0.1 88,109 + +0.1 88,109 + +0.4 88,109 + -0.2 88,109 + +0.5 88,109 + -0.8 88,110 - +0.2 88,110 - -0.3 88,110 - -0.3 88,110 - -0.3 88,110 - +0.1 88,110 - +0.5 88,110 - +0.4 88,110 - -1.0 88,229 + A4249_RS00530 0.16 -1.2 88,229 + A4249_RS00530 0.16 -1.5 88,229 + A4249_RS00530 0.16 +2.1 88,229 + A4249_RS00530 0.16 -1.6 88,229 + A4249_RS00530 0.16 -0.5 88,229 + A4249_RS00530 0.16 -0.2 88,230 - A4249_RS00530 0.16 +1.7 88,230 - A4249_RS00530 0.16 -0.2 88,230 - A4249_RS00530 0.16 +0.2 88,230 - A4249_RS00530 0.16 -0.4 88,230 - A4249_RS00530 0.16 -0.6 88,230 - A4249_RS00530 0.16 -0.4 88,230 - A4249_RS00530 0.16 +0.3 88,292 + A4249_RS00530 0.20 +0.4 88,292 + A4249_RS00530 0.20 +0.6 88,292 + A4249_RS00530 0.20 +0.0 88,292 + A4249_RS00530 0.20 +0.2 88,292 + A4249_RS00530 0.20 -2.4 88,292 + A4249_RS00530 0.20 -0.3 88,292 + A4249_RS00530 0.20 +0.5 88,292 + A4249_RS00530 0.20 -0.9 88,292 + A4249_RS00530 0.20 -0.5 88,293 - A4249_RS00530 0.20 +0.0 88,293 - A4249_RS00530 0.20 -0.9 88,293 - A4249_RS00530 0.20 +0.5 88,293 - A4249_RS00530 0.20 +0.6 88,293 - A4249_RS00530 0.20 +0.1 88,293 - A4249_RS00530 0.20 -1.0 88,470 - A4249_RS00530 0.33 -1.4 88,470 - A4249_RS00530 0.33 +1.0 88,470 - A4249_RS00530 0.33 -0.2 88,487 + A4249_RS00530 0.35 +0.4 88,487 + A4249_RS00530 0.35 -0.1 88,488 - A4249_RS00530 0.35 -0.1 88,488 - A4249_RS00530 0.35 +0.4 88,488 - A4249_RS00530 0.35 +1.8 88,488 - A4249_RS00530 0.35 +1.3 88,488 - A4249_RS00530 0.35 -0.3 88,488 - A4249_RS00530 0.35 -0.4 88,488 - A4249_RS00530 0.35 +0.7 88,511 + A4249_RS00530 0.36 -0.9 88,613 + A4249_RS00530 0.44 +1.4 88,614 - A4249_RS00530 0.44 +1.4 88,737 - A4249_RS00530 0.53 +0.0 88,793 + A4249_RS00530 0.57 -0.7 88,793 + A4249_RS00530 0.57 -0.9 88,830 + A4249_RS00530 0.60 +0.6 88,831 - A4249_RS00530 0.60 +0.2
Or see this region's nucleotide sequence