Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7270 and GFF7271 are separated by 220 nucleotides GFF7271 and GFF7272 are separated by 19 nucleotides
GFF7270 - Altronate dehydratase (EC 4.2.1.7), at 18,394 to 19,692
GFF7270
GFF7271 - Transcriptional regulator, LacI family, at 19,913 to 20,887
GFF7271
GFF7272 - D-glucarate permease, at 20,907 to 22,256
GFF7272
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1 at 19.027 kb on + strand, within GFF7270 at 19.452 kb on - strand, within GFF7270 at 19.452 kb on - strand, within GFF7270 at 19.574 kb on + strand at 19.720 kb on + strand at 19.815 kb on + strand at 19.815 kb on + strand at 19.816 kb on - strand at 20.036 kb on + strand, within GFF7271 at 20.037 kb on - strand, within GFF7271 at 20.182 kb on - strand, within GFF7271 at 20.182 kb on - strand, within GFF7271 at 20.182 kb on - strand, within GFF7271 at 20.226 kb on + strand, within GFF7271 at 20.226 kb on + strand, within GFF7271 at 20.226 kb on + strand, within GFF7271 at 20.227 kb on - strand, within GFF7271 at 20.227 kb on - strand, within GFF7271 at 20.725 kb on + strand, within GFF7271 at 20.731 kb on + strand, within GFF7271 at 20.731 kb on + strand, within GFF7271 at 20.913 kb on + strand at 20.914 kb on - strand at 21.007 kb on + strand at 21.007 kb on + strand at 21.055 kb on + strand, within GFF7272 at 21.055 kb on + strand, within GFF7272 at 21.055 kb on + strand, within GFF7272 at 21.056 kb on - strand, within GFF7272 at 21.071 kb on + strand, within GFF7272 at 21.469 kb on + strand, within GFF7272 at 21.469 kb on + strand, within GFF7272 at 21.469 kb on + strand, within GFF7272 at 21.469 kb on + strand, within GFF7272 at 21.470 kb on - strand, within GFF7272 at 21.470 kb on - strand, within GFF7272 at 21.470 kb on - strand, within GFF7272 at 21.517 kb on + strand, within GFF7272 at 21.518 kb on - strand, within GFF7272 at 21.518 kb on - strand, within GFF7272 at 21.518 kb on - strand, within GFF7272 at 21.703 kb on + strand, within GFF7272 at 21.704 kb on - strand, within GFF7272 at 21.818 kb on - strand, within GFF7272 at 21.818 kb on - strand, within GFF7272
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 19,027 + GFF7270 0.49 +0.5 19,452 - GFF7270 0.81 -0.1 19,452 - GFF7270 0.81 -0.0 19,574 + -0.0 19,720 + -2.0 19,815 + -0.5 19,815 + -0.6 19,816 - +0.0 20,036 + GFF7271 0.13 -1.8 20,037 - GFF7271 0.13 -0.5 20,182 - GFF7271 0.28 -0.4 20,182 - GFF7271 0.28 -0.8 20,182 - GFF7271 0.28 -1.2 20,226 + GFF7271 0.32 +0.4 20,226 + GFF7271 0.32 -1.8 20,226 + GFF7271 0.32 -0.4 20,227 - GFF7271 0.32 +0.0 20,227 - GFF7271 0.32 +0.6 20,725 + GFF7271 0.83 -0.6 20,731 + GFF7271 0.84 -0.9 20,731 + GFF7271 0.84 -1.0 20,913 + -0.3 20,914 - -0.5 21,007 + -0.4 21,007 + -0.5 21,055 + GFF7272 0.11 -1.4 21,055 + GFF7272 0.11 +0.2 21,055 + GFF7272 0.11 -0.2 21,056 - GFF7272 0.11 -0.5 21,071 + GFF7272 0.12 -0.7 21,469 + GFF7272 0.42 -0.2 21,469 + GFF7272 0.42 -0.6 21,469 + GFF7272 0.42 -0.8 21,469 + GFF7272 0.42 -0.1 21,470 - GFF7272 0.42 -0.8 21,470 - GFF7272 0.42 -0.7 21,470 - GFF7272 0.42 -0.2 21,517 + GFF7272 0.45 -0.5 21,518 - GFF7272 0.45 -0.6 21,518 - GFF7272 0.45 +1.5 21,518 - GFF7272 0.45 -0.2 21,703 + GFF7272 0.59 -0.5 21,704 - GFF7272 0.59 +0.2 21,818 - GFF7272 0.67 +0.8 21,818 - GFF7272 0.67 -1.7
Or see this region's nucleotide sequence