Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7020 and GFF7021 overlap by 4 nucleotides GFF7021 and GFF7022 overlap by 4 nucleotides
GFF7020 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 37,035 to 38,087
GFF7020
GFF7021 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 38,084 to 39,121
GFF7021
GFF7022 - Amidohydrolase domain protein, at 39,118 to 40,794
GFF7022
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1 at 37.409 kb on - strand, within GFF7020 at 37.576 kb on + strand, within GFF7020 at 37.737 kb on + strand, within GFF7020 at 37.738 kb on - strand, within GFF7020 at 37.800 kb on + strand, within GFF7020 at 38.723 kb on + strand, within GFF7021 at 38.724 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.849 kb on + strand, within GFF7021 at 38.849 kb on + strand, within GFF7021 at 38.850 kb on - strand, within GFF7021 at 39.142 kb on + strand at 39.142 kb on + strand at 39.358 kb on + strand, within GFF7022 at 39.359 kb on - strand, within GFF7022 at 39.359 kb on - strand, within GFF7022 at 39.359 kb on - strand, within GFF7022 at 39.359 kb on - strand, within GFF7022 at 39.520 kb on + strand, within GFF7022 at 39.521 kb on - strand, within GFF7022 at 39.521 kb on - strand, within GFF7022
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 37,409 - GFF7020 0.36 -0.4 37,576 + GFF7020 0.51 +0.2 37,737 + GFF7020 0.67 +0.5 37,738 - GFF7020 0.67 -0.0 37,800 + GFF7020 0.73 -0.4 38,723 + GFF7021 0.62 -1.1 38,724 - GFF7021 0.62 -1.5 38,787 - GFF7021 0.68 +0.1 38,787 - GFF7021 0.68 -0.7 38,787 - GFF7021 0.68 -0.9 38,787 - GFF7021 0.68 -0.2 38,849 + GFF7021 0.74 -0.9 38,849 + GFF7021 0.74 -1.0 38,850 - GFF7021 0.74 -0.5 39,142 + +0.7 39,142 + -0.1 39,358 + GFF7022 0.14 +0.2 39,359 - GFF7022 0.14 -0.0 39,359 - GFF7022 0.14 -0.0 39,359 - GFF7022 0.14 +0.4 39,359 - GFF7022 0.14 +0.2 39,520 + GFF7022 0.24 +0.4 39,521 - GFF7022 0.24 +0.4 39,521 - GFF7022 0.24 -0.7
Or see this region's nucleotide sequence