Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7007 and GFF7008 are separated by 114 nucleotides GFF7008 and GFF7009 are separated by 401 nucleotides GFF7009 and GFF7010 are separated by 104 nucleotides
GFF7007 - Flagellar biosynthesis protein FliQ, at 23,603 to 23,869
GFF7007
GFF7008 - no description, at 23,984 to 24,133
GFF7008
GFF7009 - hypothetical protein, at 24,535 to 24,930
GFF7009
GFF7010 - no description, at 25,035 to 25,337
GFF7010
Position (kb) 24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.541 kb on + strand at 23.541 kb on + strand at 23.542 kb on - strand at 23.542 kb on - strand at 23.542 kb on - strand at 23.542 kb on - strand at 23.870 kb on + strand at 23.871 kb on - strand at 23.909 kb on + strand at 23.940 kb on + strand at 23.941 kb on - strand at 23.941 kb on - strand at 24.048 kb on + strand, within GFF7008 at 24.073 kb on - strand, within GFF7008 at 24.169 kb on + strand at 24.182 kb on - strand at 24.251 kb on - strand at 24.265 kb on + strand at 24.265 kb on + strand at 24.265 kb on + strand at 24.266 kb on - strand at 24.266 kb on - strand at 24.350 kb on + strand at 24.351 kb on - strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.384 kb on - strand at 24.384 kb on - strand at 24.625 kb on + strand, within GFF7009 at 24.626 kb on - strand, within GFF7009 at 24.626 kb on - strand, within GFF7009 at 24.703 kb on + strand, within GFF7009 at 24.703 kb on + strand, within GFF7009 at 24.704 kb on - strand, within GFF7009 at 24.704 kb on - strand, within GFF7009 at 24.709 kb on + strand, within GFF7009 at 24.709 kb on + strand, within GFF7009 at 24.710 kb on - strand, within GFF7009 at 24.710 kb on - strand, within GFF7009 at 24.710 kb on - strand, within GFF7009 at 24.710 kb on - strand, within GFF7009 at 24.710 kb on - strand, within GFF7009 at 24.764 kb on + strand, within GFF7009 at 24.765 kb on - strand, within GFF7009 at 24.954 kb on + strand at 24.954 kb on + strand at 24.990 kb on + strand at 24.990 kb on + strand at 24.991 kb on - strand at 25.013 kb on - strand at 25.118 kb on + strand, within GFF7010 at 25.118 kb on + strand, within GFF7010 at 25.119 kb on - strand, within GFF7010 at 25.180 kb on + strand, within GFF7010 at 25.237 kb on + strand, within GFF7010 at 25.519 kb on + strand at 25.520 kb on - strand at 25.588 kb on - strand at 25.588 kb on - strand at 25.589 kb on + strand at 25.589 kb on + strand at 25.590 kb on - strand at 25.785 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 23,541 + +1.0 23,541 + +0.3 23,542 - -0.1 23,542 - -0.1 23,542 - +0.8 23,542 - -0.6 23,870 + -0.6 23,871 - -0.8 23,909 + -1.4 23,940 + -2.4 23,941 - +1.8 23,941 - +1.3 24,048 + GFF7008 0.43 -0.7 24,073 - GFF7008 0.59 -0.4 24,169 + +0.2 24,182 - +0.2 24,251 - +0.8 24,265 + +0.3 24,265 + -0.2 24,265 + +0.4 24,266 - -0.3 24,266 - +1.1 24,350 + -1.2 24,351 - +0.1 24,383 + -0.0 24,383 + +0.6 24,383 + -0.5 24,383 + -0.4 24,383 + -0.1 24,384 - +0.3 24,384 - -0.2 24,625 + GFF7009 0.23 -1.1 24,626 - GFF7009 0.23 -0.9 24,626 - GFF7009 0.23 -0.1 24,703 + GFF7009 0.42 -0.1 24,703 + GFF7009 0.42 -0.1 24,704 - GFF7009 0.43 -0.9 24,704 - GFF7009 0.43 +0.3 24,709 + GFF7009 0.44 -0.3 24,709 + GFF7009 0.44 -0.8 24,710 - GFF7009 0.44 -0.5 24,710 - GFF7009 0.44 -0.4 24,710 - GFF7009 0.44 -0.4 24,710 - GFF7009 0.44 -0.2 24,710 - GFF7009 0.44 -0.0 24,764 + GFF7009 0.58 -0.6 24,765 - GFF7009 0.58 -0.4 24,954 + -0.0 24,954 + +0.7 24,990 + -0.5 24,990 + -0.1 24,991 - +0.5 25,013 - -0.8 25,118 + GFF7010 0.27 +0.5 25,118 + GFF7010 0.27 +0.3 25,119 - GFF7010 0.28 -0.5 25,180 + GFF7010 0.48 +0.1 25,237 + GFF7010 0.67 -0.5 25,519 + +0.1 25,520 - -0.5 25,588 - -0.6 25,588 - +0.3 25,589 + +0.6 25,589 + +0.4 25,590 - -1.4 25,785 + -0.5
Or see this region's nucleotide sequence