Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6944 and GFF6945 are separated by 101 nucleotides GFF6945 and GFF6946 overlap by 8 nucleotides GFF6946 and GFF6947 are separated by 21 nucleotides
GFF6944 - Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) @ Fructose-6-phosphate phosphoketolase (EC 4.1.2.22), at 18,689 to 21,061
GFF6944
GFF6945 - Two-component transcriptional response regulator, OmpR family, at 21,163 to 21,891
GFF6945
GFF6946 - Sensory box histidine kinase/response regulator, at 21,884 to 24,001
GFF6946
GFF6947 - transcriptional regulator, Crp/Fnr family, at 24,023 to 24,790
GFF6947
Position (kb) 21
22
23
24
25 Strain fitness (log2 ratio) -1
0
1
2 at 21.002 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.083 kb on + strand at 21.083 kb on + strand at 21.084 kb on - strand at 21.106 kb on + strand at 21.106 kb on + strand at 21.130 kb on + strand at 21.130 kb on + strand at 21.146 kb on + strand at 21.146 kb on + strand at 21.147 kb on - strand at 21.147 kb on - strand at 21.207 kb on + strand at 21.208 kb on - strand at 21.229 kb on + strand at 21.230 kb on - strand at 21.230 kb on - strand at 21.449 kb on + strand, within GFF6945 at 21.449 kb on + strand, within GFF6945 at 21.450 kb on - strand, within GFF6945 at 21.450 kb on - strand, within GFF6945 at 21.450 kb on - strand, within GFF6945 at 21.463 kb on + strand, within GFF6945 at 21.859 kb on + strand at 21.936 kb on + strand at 21.937 kb on - strand at 21.937 kb on - strand at 22.068 kb on - strand at 22.068 kb on - strand at 22.142 kb on + strand, within GFF6946 at 22.155 kb on - strand, within GFF6946 at 22.346 kb on + strand, within GFF6946 at 22.616 kb on + strand, within GFF6946 at 22.652 kb on + strand, within GFF6946 at 22.652 kb on + strand, within GFF6946 at 22.653 kb on - strand, within GFF6946 at 23.099 kb on + strand, within GFF6946 at 23.099 kb on + strand, within GFF6946 at 23.099 kb on + strand, within GFF6946 at 23.100 kb on - strand, within GFF6946 at 23.475 kb on + strand, within GFF6946 at 23.475 kb on + strand, within GFF6946 at 23.477 kb on + strand, within GFF6946 at 23.477 kb on + strand, within GFF6946 at 23.477 kb on + strand, within GFF6946 at 23.478 kb on - strand, within GFF6946 at 23.478 kb on - strand, within GFF6946 at 23.478 kb on - strand, within GFF6946 at 23.553 kb on - strand, within GFF6946 at 23.914 kb on - strand at 23.945 kb on + strand at 23.945 kb on + strand at 24.025 kb on - strand at 24.193 kb on - strand, within GFF6947 at 24.193 kb on - strand, within GFF6947 at 24.274 kb on - strand, within GFF6947 at 24.274 kb on - strand, within GFF6947 at 24.475 kb on - strand, within GFF6947 at 24.595 kb on - strand, within GFF6947 at 24.595 kb on - strand, within GFF6947 at 24.625 kb on - strand, within GFF6947 at 24.791 kb on - strand at 24.832 kb on + strand at 24.832 kb on + strand at 24.833 kb on - strand at 24.877 kb on + strand at 24.909 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 21,002 + -0.5 21,002 + -1.2 21,002 + -1.3 21,002 + +0.1 21,002 + -0.7 21,003 - +0.4 21,003 - +1.2 21,003 - +0.1 21,003 - -0.9 21,003 - +0.1 21,083 + -0.6 21,083 + +0.4 21,084 - -0.7 21,106 + +0.5 21,106 + -0.5 21,130 + +1.0 21,130 + +0.2 21,146 + +0.3 21,146 + -1.2 21,147 - -0.3 21,147 - +1.4 21,207 + +0.0 21,208 - +0.4 21,229 + -0.2 21,230 - +0.0 21,230 - +0.9 21,449 + GFF6945 0.39 -0.0 21,449 + GFF6945 0.39 +0.1 21,450 - GFF6945 0.39 +2.1 21,450 - GFF6945 0.39 +0.8 21,450 - GFF6945 0.39 -0.5 21,463 + GFF6945 0.41 -0.3 21,859 + +0.4 21,936 + +0.5 21,937 - -0.9 21,937 - -0.9 22,068 - +0.2 22,068 - +0.6 22,142 + GFF6946 0.12 +0.7 22,155 - GFF6946 0.13 +0.6 22,346 + GFF6946 0.22 +0.1 22,616 + GFF6946 0.35 -0.0 22,652 + GFF6946 0.36 +0.3 22,652 + GFF6946 0.36 +0.4 22,653 - GFF6946 0.36 +0.5 23,099 + GFF6946 0.57 +0.4 23,099 + GFF6946 0.57 +1.1 23,099 + GFF6946 0.57 -0.2 23,100 - GFF6946 0.57 -0.3 23,475 + GFF6946 0.75 -0.5 23,475 + GFF6946 0.75 +1.1 23,477 + GFF6946 0.75 -0.1 23,477 + GFF6946 0.75 +0.4 23,477 + GFF6946 0.75 +0.5 23,478 - GFF6946 0.75 +1.8 23,478 - GFF6946 0.75 +1.2 23,478 - GFF6946 0.75 +1.1 23,553 - GFF6946 0.79 +1.8 23,914 - -0.2 23,945 + -0.2 23,945 + -1.0 24,025 - -0.6 24,193 - GFF6947 0.22 -0.1 24,193 - GFF6947 0.22 -0.2 24,274 - GFF6947 0.33 +0.4 24,274 - GFF6947 0.33 -0.6 24,475 - GFF6947 0.59 +0.4 24,595 - GFF6947 0.74 -1.0 24,595 - GFF6947 0.74 -0.5 24,625 - GFF6947 0.78 +0.8 24,791 - -0.5 24,832 + +0.2 24,832 + +0.8 24,833 - -0.4 24,877 + +0.1 24,909 + -0.2
Or see this region's nucleotide sequence