Strain Fitness in Variovorax sp. SCN45 around GFF6917

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6915 and GFF6916 are separated by 17 nucleotidesGFF6916 and GFF6917 are separated by 84 nucleotidesGFF6917 and GFF6918 are separated by 160 nucleotides GFF6915 - Alkyl hydroperoxide reductase and/or thiol-specific antioxidant family (AhpC/TSA) protein, at 52,246 to 52,938 GFF6915 GFF6916 - Methyltransferase type 11, at 52,956 to 53,561 GFF6916 GFF6917 - Uncharacterized MFS-type transporter, at 53,646 to 54,986 GFF6917 GFF6918 - Transcriptional regulator, AraC family, at 55,147 to 56,130 GFF6918 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1at 52.723 kb on + strand, within GFF6915at 52.723 kb on + strand, within GFF6915at 52.723 kb on + strand, within GFF6915at 52.723 kb on + strand, within GFF6915at 52.724 kb on - strand, within GFF6915at 52.724 kb on - strand, within GFF6915at 52.750 kb on + strand, within GFF6915at 52.750 kb on + strand, within GFF6915at 52.780 kb on + strand, within GFF6915at 52.780 kb on + strand, within GFF6915at 52.781 kb on - strand, within GFF6915at 52.781 kb on - strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 53.016 kb on + strandat 53.016 kb on + strandat 53.016 kb on + strandat 53.016 kb on + strandat 53.017 kb on - strand, within GFF6916at 53.017 kb on - strand, within GFF6916at 53.431 kb on + strand, within GFF6916at 53.432 kb on - strand, within GFF6916at 53.432 kb on - strand, within GFF6916at 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.609 kb on - strandat 53.609 kb on - strandat 53.787 kb on + strand, within GFF6917at 53.787 kb on + strand, within GFF6917at 53.787 kb on + strand, within GFF6917at 53.788 kb on - strand, within GFF6917at 53.788 kb on - strand, within GFF6917at 53.788 kb on - strand, within GFF6917at 53.788 kb on - strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.914 kb on - strand, within GFF6917at 53.914 kb on - strand, within GFF6917at 53.914 kb on - strand, within GFF6917at 54.003 kb on + strand, within GFF6917at 54.003 kb on + strand, within GFF6917at 54.004 kb on - strand, within GFF6917at 54.004 kb on - strand, within GFF6917at 54.004 kb on - strand, within GFF6917at 54.004 kb on - strand, within GFF6917at 54.004 kb on - strand, within GFF6917at 54.004 kb on - strand, within GFF6917at 54.099 kb on + strand, within GFF6917at 54.099 kb on + strand, within GFF6917at 54.099 kb on + strand, within GFF6917at 54.099 kb on + strand, within GFF6917at 54.100 kb on - strand, within GFF6917at 54.100 kb on - strand, within GFF6917at 54.100 kb on - strand, within GFF6917at 54.100 kb on - strand, within GFF6917at 54.100 kb on - strand, within GFF6917at 54.100 kb on - strand, within GFF6917at 54.138 kb on + strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.244 kb on - strand, within GFF6917at 54.244 kb on - strand, within GFF6917at 54.244 kb on - strand, within GFF6917at 54.441 kb on + strand, within GFF6917at 54.441 kb on + strand, within GFF6917at 54.441 kb on + strand, within GFF6917at 54.442 kb on - strand, within GFF6917at 54.456 kb on + strand, within GFF6917at 54.456 kb on + strand, within GFF6917at 54.456 kb on + strand, within GFF6917at 54.457 kb on - strand, within GFF6917at 54.457 kb on - strand, within GFF6917at 54.711 kb on + strand, within GFF6917at 54.720 kb on + strand, within GFF6917at 54.720 kb on + strand, within GFF6917at 54.720 kb on + strand, within GFF6917at 54.721 kb on - strand, within GFF6917at 54.721 kb on - strand, within GFF6917at 54.721 kb on - strand, within GFF6917at 54.795 kb on + strand, within GFF6917at 54.795 kb on + strand, within GFF6917at 54.796 kb on - strand, within GFF6917at 54.796 kb on - strand, within GFF6917at 55.102 kb on + strandat 55.142 kb on + strandat 55.143 kb on - strandat 55.143 kb on - strandat 55.143 kb on - strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.226 kb on - strandat 55.226 kb on - strandat 55.226 kb on - strandat 55.288 kb on + strand, within GFF6918at 55.288 kb on + strand, within GFF6918at 55.288 kb on + strand, within GFF6918at 55.289 kb on - strand, within GFF6918at 55.384 kb on + strand, within GFF6918at 55.384 kb on + strand, within GFF6918at 55.384 kb on + strand, within GFF6918at 55.384 kb on + strand, within GFF6918at 55.385 kb on - strand, within GFF6918at 55.385 kb on - strand, within GFF6918at 55.385 kb on - strand, within GFF6918at 55.385 kb on - strand, within GFF6918at 55.471 kb on + strand, within GFF6918at 55.472 kb on - strand, within GFF6918at 55.472 kb on - strand, within GFF6918at 55.615 kb on + strand, within GFF6918at 55.615 kb on + strand, within GFF6918at 55.616 kb on - strand, within GFF6918at 55.874 kb on - strand, within GFF6918at 55.874 kb on - strand, within GFF6918

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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52,723 + GFF6915 0.69 -0.9
52,723 + GFF6915 0.69 -1.5
52,723 + GFF6915 0.69 -0.0
52,723 + GFF6915 0.69 +0.1
52,724 - GFF6915 0.69 +0.1
52,724 - GFF6915 0.69 -1.0
52,750 + GFF6915 0.73 -0.3
52,750 + GFF6915 0.73 +0.1
52,780 + GFF6915 0.77 -0.1
52,780 + GFF6915 0.77 -1.2
52,781 - GFF6915 0.77 -0.9
52,781 - GFF6915 0.77 +0.0
52,843 + GFF6915 0.86 +0.2
52,843 + GFF6915 0.86 +1.6
52,843 + GFF6915 0.86 +0.1
52,843 + GFF6915 0.86 -0.4
52,843 + GFF6915 0.86 -1.2
52,843 + GFF6915 0.86 +0.4
52,843 + GFF6915 0.86 -0.1
52,844 - GFF6915 0.86 -0.7
52,844 - GFF6915 0.86 -0.7
52,844 - GFF6915 0.86 +0.3
52,844 - GFF6915 0.86 -0.1
52,844 - GFF6915 0.86 -0.3
52,844 - GFF6915 0.86 -0.1
52,844 - GFF6915 0.86 -0.0
52,844 - GFF6915 0.86 -0.3
52,844 - GFF6915 0.86 -0.7
52,844 - GFF6915 0.86 -0.7
52,844 - GFF6915 0.86 -0.9
52,927 + -1.1
52,927 + -0.0
52,927 + -0.0
52,927 + +0.8
52,927 + +0.1
52,927 + -0.4
52,927 + -0.6
52,928 - +0.7
52,928 - -1.4
52,928 - -0.2
52,928 - -0.3
52,928 - -0.0
52,928 - -0.3
52,928 - -0.4
52,928 - +0.1
52,928 - -0.1
53,016 + +0.9
53,016 + +0.5
53,016 + +0.1
53,016 + -0.6
53,017 - GFF6916 0.10 +0.3
53,017 - GFF6916 0.10 +0.2
53,431 + GFF6916 0.78 +1.4
53,432 - GFF6916 0.79 +0.2
53,432 - GFF6916 0.79 -0.7
53,566 + -0.4
53,566 + -0.4
53,566 + -0.3
53,566 + -0.6
53,566 + -0.5
53,566 + -0.7
53,566 + +0.1
53,567 - -1.1
53,567 - +0.7
53,567 - -0.9
53,567 - +0.5
53,567 - +0.1
53,567 - -0.5
53,567 - -0.2
53,567 - -0.2
53,609 - +0.4
53,609 - -0.2
53,787 + GFF6917 0.11 -0.1
53,787 + GFF6917 0.11 -0.9
53,787 + GFF6917 0.11 -0.7
53,788 - GFF6917 0.11 +0.3
53,788 - GFF6917 0.11 +0.6
53,788 - GFF6917 0.11 -1.3
53,788 - GFF6917 0.11 -0.4
53,913 + GFF6917 0.20 -0.8
53,913 + GFF6917 0.20 +0.1
53,913 + GFF6917 0.20 -0.5
53,913 + GFF6917 0.20 -1.0
53,913 + GFF6917 0.20 -0.3
53,913 + GFF6917 0.20 +0.2
53,913 + GFF6917 0.20 -0.5
53,913 + GFF6917 0.20 -0.4
53,913 + GFF6917 0.20 -0.3
53,914 - GFF6917 0.20 +0.3
53,914 - GFF6917 0.20 -0.1
53,914 - GFF6917 0.20 +0.1
54,003 + GFF6917 0.27 -1.9
54,003 + GFF6917 0.27 -0.7
54,004 - GFF6917 0.27 -0.4
54,004 - GFF6917 0.27 -0.3
54,004 - GFF6917 0.27 -0.9
54,004 - GFF6917 0.27 -0.2
54,004 - GFF6917 0.27 -0.7
54,004 - GFF6917 0.27 -0.1
54,099 + GFF6917 0.34 +0.5
54,099 + GFF6917 0.34 -0.6
54,099 + GFF6917 0.34 +0.1
54,099 + GFF6917 0.34 -2.3
54,100 - GFF6917 0.34 -0.3
54,100 - GFF6917 0.34 -0.7
54,100 - GFF6917 0.34 +0.2
54,100 - GFF6917 0.34 -0.3
54,100 - GFF6917 0.34 -0.7
54,100 - GFF6917 0.34 +0.8
54,138 + GFF6917 0.37 -0.4
54,139 - GFF6917 0.37 +0.3
54,139 - GFF6917 0.37 -0.5
54,139 - GFF6917 0.37 -1.3
54,139 - GFF6917 0.37 +0.6
54,139 - GFF6917 0.37 -0.0
54,139 - GFF6917 0.37 -0.7
54,139 - GFF6917 0.37 +0.6
54,139 - GFF6917 0.37 +0.9
54,244 - GFF6917 0.45 -0.4
54,244 - GFF6917 0.45 -0.3
54,244 - GFF6917 0.45 +0.2
54,441 + GFF6917 0.59 -0.1
54,441 + GFF6917 0.59 +0.2
54,441 + GFF6917 0.59 +0.8
54,442 - GFF6917 0.59 +0.1
54,456 + GFF6917 0.60 +0.1
54,456 + GFF6917 0.60 -0.5
54,456 + GFF6917 0.60 -0.1
54,457 - GFF6917 0.60 -0.3
54,457 - GFF6917 0.60 -0.9
54,711 + GFF6917 0.79 +0.3
54,720 + GFF6917 0.80 +0.2
54,720 + GFF6917 0.80 -1.5
54,720 + GFF6917 0.80 -0.4
54,721 - GFF6917 0.80 -1.0
54,721 - GFF6917 0.80 -0.2
54,721 - GFF6917 0.80 -0.3
54,795 + GFF6917 0.86 -0.5
54,795 + GFF6917 0.86 +0.1
54,796 - GFF6917 0.86 -0.1
54,796 - GFF6917 0.86 -0.8
55,102 + -0.6
55,142 + +0.5
55,143 - +0.6
55,143 - +0.7
55,143 - -0.2
55,225 + -1.6
55,225 + +0.3
55,225 + +0.7
55,225 + +1.0
55,225 + -1.7
55,225 + -0.3
55,226 - -0.1
55,226 - +0.9
55,226 - -0.1
55,288 + GFF6918 0.14 -0.6
55,288 + GFF6918 0.14 -0.1
55,288 + GFF6918 0.14 +0.3
55,289 - GFF6918 0.14 +0.0
55,384 + GFF6918 0.24 +0.5
55,384 + GFF6918 0.24 -0.4
55,384 + GFF6918 0.24 -0.7
55,384 + GFF6918 0.24 +0.0
55,385 - GFF6918 0.24 +0.7
55,385 - GFF6918 0.24 -0.4
55,385 - GFF6918 0.24 +1.1
55,385 - GFF6918 0.24 -0.6
55,471 + GFF6918 0.33 -0.1
55,472 - GFF6918 0.33 -1.5
55,472 - GFF6918 0.33 +0.5
55,615 + GFF6918 0.48 -0.0
55,615 + GFF6918 0.48 -0.8
55,616 - GFF6918 0.48 -0.0
55,874 - GFF6918 0.74 -0.5
55,874 - GFF6918 0.74 -0.1

Or see this region's nucleotide sequence