Strain Fitness in Variovorax sp. SCN45 around GFF6800

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6798 and GFF6799 are separated by 27 nucleotidesGFF6799 and GFF6800 are separated by 15 nucleotidesGFF6800 and GFF6801 overlap by 4 nucleotidesGFF6801 and GFF6802 are separated by 97 nucleotides GFF6798 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 45,714 to 46,367 GFF6798 GFF6799 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 46,395 to 47,057 GFF6799 GFF6800 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 47,073 to 47,876 GFF6800 GFF6801 - Transcriptional regulator, GntR family, at 47,873 to 48,664 GFF6801 GFF6802 - Uncharacterized MFS-type transporter, at 48,762 to 50,102 GFF6802 Position (kb) 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 46.081 kb on + strand, within GFF6798at 46.082 kb on - strand, within GFF6798at 46.082 kb on - strand, within GFF6798at 46.201 kb on + strand, within GFF6798at 46.201 kb on + strand, within GFF6798at 46.201 kb on + strand, within GFF6798at 46.202 kb on - strand, within GFF6798at 46.202 kb on - strand, within GFF6798at 46.202 kb on - strand, within GFF6798at 46.202 kb on - strand, within GFF6798at 46.382 kb on + strandat 46.382 kb on + strandat 46.382 kb on + strandat 46.383 kb on - strandat 46.383 kb on - strandat 46.383 kb on - strandat 46.465 kb on + strand, within GFF6799at 46.465 kb on + strand, within GFF6799at 46.466 kb on - strand, within GFF6799at 46.535 kb on - strand, within GFF6799at 46.879 kb on + strand, within GFF6799at 46.879 kb on + strand, within GFF6799at 46.879 kb on + strand, within GFF6799at 46.879 kb on + strand, within GFF6799at 46.879 kb on + strand, within GFF6799at 46.879 kb on + strand, within GFF6799at 46.880 kb on - strand, within GFF6799at 46.880 kb on - strand, within GFF6799at 46.880 kb on - strand, within GFF6799at 46.880 kb on - strand, within GFF6799at 46.880 kb on - strand, within GFF6799at 46.880 kb on - strand, within GFF6799at 47.047 kb on + strandat 47.365 kb on + strand, within GFF6800at 47.365 kb on + strand, within GFF6800at 47.365 kb on + strand, within GFF6800at 47.485 kb on + strand, within GFF6800at 47.485 kb on + strand, within GFF6800at 47.486 kb on - strand, within GFF6800at 47.596 kb on + strand, within GFF6800at 47.876 kb on + strandat 47.876 kb on + strandat 47.876 kb on + strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.888 kb on + strandat 47.888 kb on + strandat 47.888 kb on + strandat 47.888 kb on + strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.892 kb on + strandat 47.892 kb on + strandat 47.892 kb on + strandat 47.892 kb on + strandat 47.893 kb on - strandat 47.893 kb on - strandat 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.177 kb on + strand, within GFF6801at 48.178 kb on - strand, within GFF6801at 48.178 kb on - strand, within GFF6801at 48.178 kb on - strand, within GFF6801at 48.210 kb on + strand, within GFF6801at 48.210 kb on + strand, within GFF6801at 48.211 kb on - strand, within GFF6801at 48.211 kb on - strand, within GFF6801at 48.211 kb on - strand, within GFF6801at 48.394 kb on + strand, within GFF6801at 48.563 kb on + strand, within GFF6801at 48.564 kb on - strand, within GFF6801at 48.564 kb on - strand, within GFF6801at 48.664 kb on + strandat 48.664 kb on + strandat 48.665 kb on - strandat 48.665 kb on - strandat 48.665 kb on - strandat 48.674 kb on + strandat 48.674 kb on + strandat 48.675 kb on - strandat 48.675 kb on - strandat 48.699 kb on + strandat 48.699 kb on + strandat 48.843 kb on + strandat 48.843 kb on + strandat 48.844 kb on - strandat 48.847 kb on + strandat 48.848 kb on - strandat 48.848 kb on - strandat 48.848 kb on - strandat 48.848 kb on - strandat 48.848 kb on - strandat 48.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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46,081 + GFF6798 0.56 +1.5
46,082 - GFF6798 0.56 -0.4
46,082 - GFF6798 0.56 +0.1
46,201 + GFF6798 0.74 -1.2
46,201 + GFF6798 0.74 -0.8
46,201 + GFF6798 0.74 +0.1
46,202 - GFF6798 0.75 -0.4
46,202 - GFF6798 0.75 +0.2
46,202 - GFF6798 0.75 -1.9
46,202 - GFF6798 0.75 -1.4
46,382 + +0.6
46,382 + -0.3
46,382 + -1.7
46,383 - +0.0
46,383 - -0.5
46,383 - -0.3
46,465 + GFF6799 0.11 +0.3
46,465 + GFF6799 0.11 -2.0
46,466 - GFF6799 0.11 -0.7
46,535 - GFF6799 0.21 -0.1
46,879 + GFF6799 0.73 -0.6
46,879 + GFF6799 0.73 +0.5
46,879 + GFF6799 0.73 +0.3
46,879 + GFF6799 0.73 -0.8
46,879 + GFF6799 0.73 -0.8
46,879 + GFF6799 0.73 -0.1
46,880 - GFF6799 0.73 +0.1
46,880 - GFF6799 0.73 +0.8
46,880 - GFF6799 0.73 +0.7
46,880 - GFF6799 0.73 +1.5
46,880 - GFF6799 0.73 -0.3
46,880 - GFF6799 0.73 -0.4
47,047 + -0.4
47,365 + GFF6800 0.36 -0.3
47,365 + GFF6800 0.36 -2.5
47,365 + GFF6800 0.36 +0.2
47,485 + GFF6800 0.51 +0.6
47,485 + GFF6800 0.51 +1.5
47,486 - GFF6800 0.51 -0.3
47,596 + GFF6800 0.65 -0.0
47,876 + -0.4
47,876 + -0.7
47,876 + +0.3
47,877 - +0.0
47,877 - -0.5
47,877 - -0.6
47,877 - -0.3
47,877 - +0.0
47,877 - -0.3
47,877 - +0.1
47,877 - +2.2
47,877 - -0.3
47,877 - +0.7
47,877 - -0.9
47,877 - -1.1
47,888 + -1.3
47,888 + -0.2
47,888 + +0.3
47,888 + -0.3
47,889 - -0.4
47,889 - -0.2
47,889 - -0.0
47,889 - +0.6
47,889 - -1.4
47,889 - +0.2
47,892 + -1.3
47,892 + -1.1
47,892 + +0.2
47,892 + -0.1
47,893 - +0.2
47,893 - -1.0
48,134 + GFF6801 0.33 +0.6
48,134 + GFF6801 0.33 -0.5
48,134 + GFF6801 0.33 +1.1
48,134 + GFF6801 0.33 -0.3
48,134 + GFF6801 0.33 -0.4
48,134 + GFF6801 0.33 -1.1
48,134 + GFF6801 0.33 -0.8
48,134 + GFF6801 0.33 -0.9
48,134 + GFF6801 0.33 +0.9
48,134 + GFF6801 0.33 -0.7
48,134 + GFF6801 0.33 -0.4
48,135 - GFF6801 0.33 -1.0
48,135 - GFF6801 0.33 -0.2
48,135 - GFF6801 0.33 +0.7
48,135 - GFF6801 0.33 +0.2
48,135 - GFF6801 0.33 +0.2
48,135 - GFF6801 0.33 -0.8
48,135 - GFF6801 0.33 -1.0
48,135 - GFF6801 0.33 +0.2
48,135 - GFF6801 0.33 -0.6
48,135 - GFF6801 0.33 +0.7
48,135 - GFF6801 0.33 -0.7
48,135 - GFF6801 0.33 -2.0
48,135 - GFF6801 0.33 +0.4
48,177 + GFF6801 0.38 -0.8
48,178 - GFF6801 0.39 -0.9
48,178 - GFF6801 0.39 +0.1
48,178 - GFF6801 0.39 -2.0
48,210 + GFF6801 0.43 -0.4
48,210 + GFF6801 0.43 -1.4
48,211 - GFF6801 0.43 +0.5
48,211 - GFF6801 0.43 -0.8
48,211 - GFF6801 0.43 +0.2
48,394 + GFF6801 0.66 +1.2
48,563 + GFF6801 0.87 -0.1
48,564 - GFF6801 0.87 -0.2
48,564 - GFF6801 0.87 +1.1
48,664 + -0.2
48,664 + -0.5
48,665 - -0.1
48,665 - +0.0
48,665 - -1.7
48,674 + -0.3
48,674 + +0.9
48,675 - +0.3
48,675 - -0.4
48,699 + -0.7
48,699 + -0.4
48,843 + -0.3
48,843 + -0.1
48,844 - -0.9
48,847 + -1.2
48,848 - +0.5
48,848 - +0.3
48,848 - -0.5
48,848 - -0.1
48,848 - -0.7
48,848 - -0.0

Or see this region's nucleotide sequence