Strain Fitness in Variovorax sp. SCN45 around GFF6606

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6603 and GFF6604 overlap by 4 nucleotidesGFF6604 and GFF6605 overlap by 4 nucleotidesGFF6605 and GFF6606 overlap by 4 nucleotidesGFF6606 and GFF6607 are separated by 26 nucleotidesGFF6607 and GFF6608 are separated by 26 nucleotides GFF6603 - Glycosidases, at 49,724 to 50,269 GFF6603 GFF6604 - FIG00457034: hypothetical protein, at 50,266 to 50,538 GFF6604 GFF6605 - ParA-like protein, at 50,535 to 51,173 GFF6605 GFF6606 - no description, at 51,170 to 51,397 GFF6606 GFF6607 - Plasmid replication initiator protein, at 51,424 to 52,290 GFF6607 GFF6608 - hypothetical protein, at 52,317 to 52,598 GFF6608 Position (kb) 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1at 50.414 kb on + strand, within GFF6604at 51.259 kb on + strand, within GFF6606at 51.259 kb on + strand, within GFF6606at 51.262 kb on + strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.272 kb on - strand, within GFF6606at 51.275 kb on + strand, within GFF6606at 51.275 kb on + strand, within GFF6606at 51.276 kb on - strand, within GFF6606at 51.276 kb on - strand, within GFF6606at 51.281 kb on + strand, within GFF6606at 51.281 kb on + strand, within GFF6606at 51.282 kb on - strand, within GFF6606at 51.282 kb on - strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.289 kb on + strand, within GFF6606at 51.290 kb on - strand, within GFF6606at 51.292 kb on - strand, within GFF6606at 51.315 kb on - strand, within GFF6606at 51.345 kb on + strand, within GFF6606at 51.393 kb on - strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.665 kb on + strand, within GFF6607at 51.666 kb on - strand, within GFF6607at 51.702 kb on - strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.924 kb on - strand, within GFF6607at 51.939 kb on + strand, within GFF6607at 51.940 kb on - strand, within GFF6607at 52.354 kb on + strand, within GFF6608

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
50,414 + GFF6604 0.54 -0.0
51,259 + GFF6606 0.39 -0.0
51,259 + GFF6606 0.39 -0.2
51,262 + GFF6606 0.40 +0.4
51,263 - GFF6606 0.41 +0.4
51,263 - GFF6606 0.41 -1.1
51,263 - GFF6606 0.41 -0.3
51,263 - GFF6606 0.41 +0.7
51,266 + GFF6606 0.42 -0.6
51,266 + GFF6606 0.42 -0.2
51,266 + GFF6606 0.42 +0.1
51,267 - GFF6606 0.43 -0.6
51,267 - GFF6606 0.43 +1.5
51,267 - GFF6606 0.43 -2.9
51,267 - GFF6606 0.43 -1.3
51,267 - GFF6606 0.43 -1.8
51,267 - GFF6606 0.43 -0.1
51,271 + GFF6606 0.44 -1.6
51,271 + GFF6606 0.44 -0.2
51,271 + GFF6606 0.44 -0.4
51,271 + GFF6606 0.44 -1.3
51,272 - GFF6606 0.45 +0.2
51,275 + GFF6606 0.46 +0.2
51,275 + GFF6606 0.46 -0.5
51,276 - GFF6606 0.46 +0.4
51,276 - GFF6606 0.46 +0.2
51,281 + GFF6606 0.49 -0.2
51,281 + GFF6606 0.49 -0.5
51,282 - GFF6606 0.49 -1.0
51,282 - GFF6606 0.49 +0.2
51,284 + GFF6606 0.50 +0.7
51,284 + GFF6606 0.50 -1.3
51,284 + GFF6606 0.50 +0.4
51,284 + GFF6606 0.50 -0.0
51,284 + GFF6606 0.50 -0.2
51,285 - GFF6606 0.50 +0.5
51,285 - GFF6606 0.50 -1.2
51,285 - GFF6606 0.50 +0.1
51,285 - GFF6606 0.50 -0.5
51,285 - GFF6606 0.50 -0.0
51,285 - GFF6606 0.50 -0.2
51,289 + GFF6606 0.52 +0.4
51,290 - GFF6606 0.53 -0.5
51,292 - GFF6606 0.54 -0.4
51,315 - GFF6606 0.64 -1.0
51,345 + GFF6606 0.77 +0.0
51,393 - -0.3
51,454 + +0.3
51,454 + +0.3
51,454 + +1.4
51,454 + -0.8
51,454 + -0.7
51,454 + +0.2
51,454 + -0.3
51,455 - -1.5
51,455 - -0.5
51,455 - +0.3
51,455 - -0.1
51,665 + GFF6607 0.28 -0.1
51,666 - GFF6607 0.28 -0.2
51,702 - GFF6607 0.32 +0.4
51,749 + GFF6607 0.37 +0.3
51,749 + GFF6607 0.37 -0.3
51,749 + GFF6607 0.37 +1.3
51,749 + GFF6607 0.37 -0.1
51,750 - GFF6607 0.38 -0.2
51,750 - GFF6607 0.38 +0.2
51,750 - GFF6607 0.38 -0.1
51,750 - GFF6607 0.38 +0.2
51,924 - GFF6607 0.58 -0.3
51,939 + GFF6607 0.59 +0.1
51,940 - GFF6607 0.60 +0.5
52,354 + GFF6608 0.13 -1.0

Or see this region's nucleotide sequence