Strain Fitness in Variovorax sp. SCN45 around GFF6411

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6409 and GFF6410 are separated by 61 nucleotidesGFF6410 and GFF6411 are separated by 11 nucleotidesGFF6411 and GFF6412 overlap by 4 nucleotidesGFF6412 and GFF6413 are separated by 13 nucleotides GFF6409 - Histidine ammonia-lyase (EC 4.3.1.3), at 83,649 to 85,208 GFF6409 GFF6410 - Histidine utilization repressor, at 85,270 to 86,007 GFF6410 GFF6411 - Histidine ABC transporter, ATP-binding protein, at 86,019 to 86,801 GFF6411 GFF6412 - Histidine ABC transporter, permease protein, at 86,798 to 87,640 GFF6412 GFF6413 - Histidine ABC transporter, substrate-binding protein, at 87,654 to 88,625 GFF6413 Position (kb) 86 87Strain fitness (log2 ratio) -1 0 1 2at 85.021 kb on + strand, within GFF6409at 85.221 kb on - strandat 85.221 kb on - strandat 85.222 kb on + strandat 85.223 kb on - strandat 85.223 kb on - strandat 85.223 kb on - strandat 85.246 kb on + strandat 85.246 kb on + strandat 85.246 kb on + strandat 85.246 kb on + strandat 85.247 kb on - strandat 85.247 kb on - strandat 85.247 kb on - strandat 85.247 kb on - strandat 85.271 kb on + strandat 85.298 kb on + strandat 85.319 kb on + strandat 85.319 kb on + strandat 85.320 kb on - strandat 85.450 kb on + strand, within GFF6410at 85.450 kb on + strand, within GFF6410at 85.502 kb on + strand, within GFF6410at 85.502 kb on + strand, within GFF6410at 85.502 kb on + strand, within GFF6410at 85.502 kb on + strand, within GFF6410at 85.502 kb on + strand, within GFF6410at 85.503 kb on - strand, within GFF6410at 85.503 kb on - strand, within GFF6410at 85.503 kb on - strand, within GFF6410at 85.503 kb on - strand, within GFF6410at 85.503 kb on - strand, within GFF6410at 85.541 kb on + strand, within GFF6410at 85.541 kb on + strand, within GFF6410at 85.542 kb on - strand, within GFF6410at 85.568 kb on + strand, within GFF6410at 85.568 kb on + strand, within GFF6410at 85.568 kb on + strand, within GFF6410at 85.568 kb on + strand, within GFF6410at 85.569 kb on - strand, within GFF6410at 85.569 kb on - strand, within GFF6410at 85.569 kb on - strand, within GFF6410at 85.569 kb on - strand, within GFF6410at 85.712 kb on + strand, within GFF6410at 85.712 kb on + strand, within GFF6410at 85.712 kb on + strand, within GFF6410at 85.713 kb on - strand, within GFF6410at 85.976 kb on + strandat 86.110 kb on + strand, within GFF6411at 86.110 kb on + strand, within GFF6411at 86.110 kb on + strand, within GFF6411at 86.110 kb on + strand, within GFF6411at 86.110 kb on + strand, within GFF6411at 86.111 kb on - strand, within GFF6411at 86.111 kb on - strand, within GFF6411at 86.111 kb on - strand, within GFF6411at 86.111 kb on - strand, within GFF6411at 86.111 kb on - strand, within GFF6411at 86.111 kb on - strand, within GFF6411at 86.542 kb on + strand, within GFF6411at 86.542 kb on + strand, within GFF6411at 86.542 kb on + strand, within GFF6411at 86.542 kb on + strand, within GFF6411at 86.542 kb on + strand, within GFF6411at 86.543 kb on - strand, within GFF6411at 86.543 kb on - strand, within GFF6411at 86.543 kb on - strand, within GFF6411at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.983 kb on - strand, within GFF6412at 86.983 kb on - strand, within GFF6412at 86.983 kb on - strand, within GFF6412at 86.983 kb on - strand, within GFF6412at 86.983 kb on - strand, within GFF6412at 86.983 kb on - strand, within GFF6412at 87.090 kb on + strand, within GFF6412at 87.090 kb on + strand, within GFF6412at 87.090 kb on + strand, within GFF6412at 87.090 kb on + strand, within GFF6412at 87.171 kb on + strand, within GFF6412at 87.249 kb on + strand, within GFF6412at 87.249 kb on + strand, within GFF6412at 87.308 kb on - strand, within GFF6412at 87.308 kb on - strand, within GFF6412at 87.399 kb on + strand, within GFF6412at 87.400 kb on - strand, within GFF6412at 87.497 kb on + strand, within GFF6412at 87.497 kb on + strand, within GFF6412at 87.497 kb on + strand, within GFF6412at 87.497 kb on + strand, within GFF6412at 87.497 kb on + strand, within GFF6412at 87.498 kb on - strand, within GFF6412at 87.498 kb on - strand, within GFF6412at 87.498 kb on - strand, within GFF6412at 87.498 kb on - strand, within GFF6412at 87.498 kb on - strand, within GFF6412at 87.655 kb on + strandat 87.655 kb on + strandat 87.655 kb on + strandat 87.655 kb on + strandat 87.655 kb on + strandat 87.655 kb on + strandat 87.655 kb on + strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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85,021 + GFF6409 0.88 +0.3
85,221 - +0.3
85,221 - +1.4
85,222 + +1.0
85,223 - +0.6
85,223 - +0.3
85,223 - -0.2
85,246 + +0.0
85,246 + -0.8
85,246 + +0.5
85,246 + -0.6
85,247 - -0.2
85,247 - +0.3
85,247 - +1.2
85,247 - -0.7
85,271 + +0.2
85,298 + +1.1
85,319 + -0.4
85,319 + -0.4
85,320 - +0.1
85,450 + GFF6410 0.24 -0.3
85,450 + GFF6410 0.24 +0.4
85,502 + GFF6410 0.31 +1.8
85,502 + GFF6410 0.31 -1.0
85,502 + GFF6410 0.31 +0.0
85,502 + GFF6410 0.31 +0.0
85,502 + GFF6410 0.31 +0.3
85,503 - GFF6410 0.32 +0.3
85,503 - GFF6410 0.32 -0.7
85,503 - GFF6410 0.32 -0.2
85,503 - GFF6410 0.32 -1.3
85,503 - GFF6410 0.32 -0.3
85,541 + GFF6410 0.37 -1.2
85,541 + GFF6410 0.37 +2.6
85,542 - GFF6410 0.37 -0.9
85,568 + GFF6410 0.40 -1.0
85,568 + GFF6410 0.40 +0.3
85,568 + GFF6410 0.40 -0.1
85,568 + GFF6410 0.40 +0.4
85,569 - GFF6410 0.41 -0.4
85,569 - GFF6410 0.41 -0.7
85,569 - GFF6410 0.41 +0.3
85,569 - GFF6410 0.41 +0.1
85,712 + GFF6410 0.60 +0.2
85,712 + GFF6410 0.60 -0.5
85,712 + GFF6410 0.60 -0.3
85,713 - GFF6410 0.60 +0.8
85,976 + -0.6
86,110 + GFF6411 0.12 +0.2
86,110 + GFF6411 0.12 +0.4
86,110 + GFF6411 0.12 -0.6
86,110 + GFF6411 0.12 +0.7
86,110 + GFF6411 0.12 +0.7
86,111 - GFF6411 0.12 +0.3
86,111 - GFF6411 0.12 +0.8
86,111 - GFF6411 0.12 +0.1
86,111 - GFF6411 0.12 -0.7
86,111 - GFF6411 0.12 +0.8
86,111 - GFF6411 0.12 -0.7
86,542 + GFF6411 0.67 -0.6
86,542 + GFF6411 0.67 -0.6
86,542 + GFF6411 0.67 -0.2
86,542 + GFF6411 0.67 +1.1
86,542 + GFF6411 0.67 -0.4
86,543 - GFF6411 0.67 -0.2
86,543 - GFF6411 0.67 -0.1
86,543 - GFF6411 0.67 -0.3
86,982 + GFF6412 0.22 +0.8
86,982 + GFF6412 0.22 -0.4
86,982 + GFF6412 0.22 +0.7
86,982 + GFF6412 0.22 -1.4
86,982 + GFF6412 0.22 -0.5
86,982 + GFF6412 0.22 -0.4
86,982 + GFF6412 0.22 -1.3
86,982 + GFF6412 0.22 -0.4
86,983 - GFF6412 0.22 -1.2
86,983 - GFF6412 0.22 -0.2
86,983 - GFF6412 0.22 -0.1
86,983 - GFF6412 0.22 -0.3
86,983 - GFF6412 0.22 +0.3
86,983 - GFF6412 0.22 +0.3
87,090 + GFF6412 0.35 +0.1
87,090 + GFF6412 0.35 -0.3
87,090 + GFF6412 0.35 +0.8
87,090 + GFF6412 0.35 +0.8
87,171 + GFF6412 0.44 +0.8
87,249 + GFF6412 0.53 +0.2
87,249 + GFF6412 0.53 -0.5
87,308 - GFF6412 0.60 +0.3
87,308 - GFF6412 0.60 -0.0
87,399 + GFF6412 0.71 -0.2
87,400 - GFF6412 0.71 -0.9
87,497 + GFF6412 0.83 -0.5
87,497 + GFF6412 0.83 -0.2
87,497 + GFF6412 0.83 +0.6
87,497 + GFF6412 0.83 +0.1
87,497 + GFF6412 0.83 +0.1
87,498 - GFF6412 0.83 -0.7
87,498 - GFF6412 0.83 -0.4
87,498 - GFF6412 0.83 +0.6
87,498 - GFF6412 0.83 -0.5
87,498 - GFF6412 0.83 -0.7
87,655 + -0.3
87,655 + -0.5
87,655 + -0.3
87,655 + +0.5
87,655 + -1.1
87,655 + +1.8
87,655 + +0.6
87,656 - +1.0
87,656 - -0.3
87,656 - +1.8
87,656 - -0.1
87,656 - -0.3
87,656 - +0.5
87,656 - -0.0
87,656 - -0.1
87,656 - -0.6
87,656 - +0.3
87,656 - -0.6
87,656 - -0.2
87,656 - -1.3

Or see this region's nucleotide sequence