Strain Fitness in Variovorax sp. SCN45 around GFF6269

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6268 and GFF6269 are separated by 28 nucleotidesGFF6269 and GFF6270 are separated by 7 nucleotides GFF6268 - BUG/TctC family periplasmic protein, at 59,427 to 60,446 GFF6268 GFF6269 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 60,475 to 62,187 GFF6269 GFF6270 - Uncharacterized MFS-type transporter, at 62,195 to 63,646 GFF6270 Position (kb) 60 61 62 63Strain fitness (log2 ratio) -2 -1 0 1 2at 59.614 kb on + strand, within GFF6268at 59.614 kb on + strand, within GFF6268at 59.614 kb on + strand, within GFF6268at 59.615 kb on - strand, within GFF6268at 59.615 kb on - strand, within GFF6268at 59.615 kb on - strand, within GFF6268at 59.615 kb on - strand, within GFF6268at 59.615 kb on - strand, within GFF6268at 59.733 kb on + strand, within GFF6268at 59.734 kb on - strand, within GFF6268at 60.210 kb on + strand, within GFF6268at 60.381 kb on + strandat 60.381 kb on + strandat 60.381 kb on + strandat 60.381 kb on + strandat 60.381 kb on + strandat 60.381 kb on + strandat 60.381 kb on + strandat 60.381 kb on + strandat 60.381 kb on + strandat 60.382 kb on - strandat 60.382 kb on - strandat 60.382 kb on - strandat 60.382 kb on - strandat 60.382 kb on - strandat 60.382 kb on - strandat 60.382 kb on - strandat 60.382 kb on - strandat 60.382 kb on - strandat 60.796 kb on + strand, within GFF6269at 60.796 kb on + strand, within GFF6269at 60.865 kb on + strand, within GFF6269at 60.865 kb on + strand, within GFF6269at 60.865 kb on + strand, within GFF6269at 60.865 kb on + strand, within GFF6269at 60.865 kb on + strand, within GFF6269at 61.021 kb on + strand, within GFF6269at 61.021 kb on + strand, within GFF6269at 61.021 kb on + strand, within GFF6269at 61.022 kb on - strand, within GFF6269at 61.022 kb on - strand, within GFF6269at 61.171 kb on + strand, within GFF6269at 61.171 kb on + strand, within GFF6269at 61.171 kb on + strand, within GFF6269at 61.172 kb on - strand, within GFF6269at 61.172 kb on - strand, within GFF6269at 61.172 kb on - strand, within GFF6269at 61.172 kb on - strand, within GFF6269at 61.172 kb on - strand, within GFF6269at 61.174 kb on + strand, within GFF6269at 61.174 kb on + strand, within GFF6269at 61.175 kb on - strand, within GFF6269at 61.175 kb on - strand, within GFF6269at 61.175 kb on - strand, within GFF6269at 61.175 kb on - strand, within GFF6269at 61.333 kb on + strand, within GFF6269at 61.334 kb on - strand, within GFF6269at 61.451 kb on - strand, within GFF6269at 61.702 kb on + strand, within GFF6269at 61.702 kb on + strand, within GFF6269at 61.702 kb on + strand, within GFF6269at 61.703 kb on - strand, within GFF6269at 61.703 kb on - strand, within GFF6269at 61.703 kb on - strand, within GFF6269at 61.703 kb on - strand, within GFF6269at 61.703 kb on - strand, within GFF6269at 61.750 kb on + strand, within GFF6269at 61.756 kb on + strand, within GFF6269at 61.756 kb on + strand, within GFF6269at 61.756 kb on + strand, within GFF6269at 61.757 kb on - strand, within GFF6269at 61.757 kb on - strand, within GFF6269at 61.807 kb on + strand, within GFF6269at 61.807 kb on + strand, within GFF6269at 61.808 kb on - strand, within GFF6269at 61.888 kb on + strand, within GFF6269at 61.888 kb on + strand, within GFF6269at 61.888 kb on + strand, within GFF6269at 61.888 kb on + strand, within GFF6269at 61.889 kb on - strand, within GFF6269at 61.909 kb on + strand, within GFF6269at 61.909 kb on + strand, within GFF6269at 61.909 kb on + strand, within GFF6269at 61.910 kb on - strand, within GFF6269at 61.910 kb on - strand, within GFF6269at 61.910 kb on - strand, within GFF6269at 61.972 kb on + strand, within GFF6269at 61.972 kb on + strand, within GFF6269at 61.972 kb on + strand, within GFF6269at 61.972 kb on + strand, within GFF6269at 61.973 kb on - strand, within GFF6269at 61.973 kb on - strand, within GFF6269at 61.973 kb on - strand, within GFF6269at 61.973 kb on - strand, within GFF6269at 62.026 kb on + strandat 62.026 kb on + strandat 62.026 kb on + strandat 62.027 kb on - strandat 62.027 kb on - strandat 62.027 kb on - strandat 62.027 kb on - strandat 62.101 kb on + strandat 62.101 kb on + strandat 62.101 kb on + strandat 62.102 kb on - strandat 62.102 kb on - strandat 62.102 kb on - strandat 62.226 kb on + strandat 62.376 kb on + strand, within GFF6270at 62.377 kb on - strand, within GFF6270at 62.377 kb on - strand, within GFF6270at 62.691 kb on + strand, within GFF6270at 62.691 kb on + strand, within GFF6270at 62.692 kb on - strand, within GFF6270at 62.692 kb on - strand, within GFF6270at 62.692 kb on - strand, within GFF6270at 62.736 kb on + strand, within GFF6270at 62.737 kb on - strand, within GFF6270at 62.820 kb on + strand, within GFF6270at 62.820 kb on + strand, within GFF6270at 62.821 kb on - strand, within GFF6270at 62.821 kb on - strand, within GFF6270at 62.821 kb on - strand, within GFF6270

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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59,614 + GFF6268 0.18 +0.1
59,614 + GFF6268 0.18 -0.7
59,614 + GFF6268 0.18 -0.7
59,615 - GFF6268 0.18 -0.6
59,615 - GFF6268 0.18 -0.5
59,615 - GFF6268 0.18 +0.3
59,615 - GFF6268 0.18 +0.2
59,615 - GFF6268 0.18 -0.5
59,733 + GFF6268 0.30 +0.6
59,734 - GFF6268 0.30 +0.5
60,210 + GFF6268 0.77 +0.3
60,381 + -0.2
60,381 + -0.5
60,381 + +0.6
60,381 + +0.0
60,381 + +0.3
60,381 + -0.9
60,381 + -0.7
60,381 + +0.6
60,381 + -0.1
60,382 - -0.2
60,382 - +0.2
60,382 - -1.4
60,382 - +1.2
60,382 - -0.1
60,382 - +0.1
60,382 - +0.1
60,382 - +0.2
60,382 - +0.1
60,796 + GFF6269 0.19 -0.2
60,796 + GFF6269 0.19 +0.9
60,865 + GFF6269 0.23 -1.5
60,865 + GFF6269 0.23 -0.1
60,865 + GFF6269 0.23 +0.1
60,865 + GFF6269 0.23 -1.2
60,865 + GFF6269 0.23 -0.4
61,021 + GFF6269 0.32 -0.7
61,021 + GFF6269 0.32 +0.2
61,021 + GFF6269 0.32 -0.4
61,022 - GFF6269 0.32 -1.7
61,022 - GFF6269 0.32 -0.5
61,171 + GFF6269 0.41 +2.1
61,171 + GFF6269 0.41 +1.3
61,171 + GFF6269 0.41 -2.5
61,172 - GFF6269 0.41 +0.5
61,172 - GFF6269 0.41 -0.0
61,172 - GFF6269 0.41 -0.1
61,172 - GFF6269 0.41 +1.1
61,172 - GFF6269 0.41 +0.2
61,174 + GFF6269 0.41 +0.6
61,174 + GFF6269 0.41 -0.1
61,175 - GFF6269 0.41 -1.9
61,175 - GFF6269 0.41 +0.5
61,175 - GFF6269 0.41 -1.3
61,175 - GFF6269 0.41 -0.2
61,333 + GFF6269 0.50 +0.4
61,334 - GFF6269 0.50 -0.5
61,451 - GFF6269 0.57 +0.0
61,702 + GFF6269 0.72 -0.0
61,702 + GFF6269 0.72 -0.5
61,702 + GFF6269 0.72 -0.7
61,703 - GFF6269 0.72 -0.1
61,703 - GFF6269 0.72 +1.2
61,703 - GFF6269 0.72 +0.0
61,703 - GFF6269 0.72 +0.2
61,703 - GFF6269 0.72 -0.3
61,750 + GFF6269 0.74 +0.3
61,756 + GFF6269 0.75 -0.1
61,756 + GFF6269 0.75 -0.3
61,756 + GFF6269 0.75 -0.8
61,757 - GFF6269 0.75 -0.1
61,757 - GFF6269 0.75 -0.0
61,807 + GFF6269 0.78 +0.6
61,807 + GFF6269 0.78 -0.7
61,808 - GFF6269 0.78 +0.2
61,888 + GFF6269 0.82 -0.5
61,888 + GFF6269 0.82 -0.3
61,888 + GFF6269 0.82 -0.2
61,888 + GFF6269 0.82 -0.6
61,889 - GFF6269 0.83 -0.2
61,909 + GFF6269 0.84 +1.1
61,909 + GFF6269 0.84 -0.3
61,909 + GFF6269 0.84 -0.2
61,910 - GFF6269 0.84 -1.9
61,910 - GFF6269 0.84 -0.5
61,910 - GFF6269 0.84 -0.1
61,972 + GFF6269 0.87 -0.7
61,972 + GFF6269 0.87 -0.2
61,972 + GFF6269 0.87 -0.8
61,972 + GFF6269 0.87 -1.5
61,973 - GFF6269 0.87 -0.8
61,973 - GFF6269 0.87 +1.2
61,973 - GFF6269 0.87 -0.7
61,973 - GFF6269 0.87 -0.0
62,026 + -0.8
62,026 + -0.9
62,026 + -1.0
62,027 - -0.2
62,027 - -0.0
62,027 - +0.4
62,027 - -0.5
62,101 + -0.4
62,101 + -0.9
62,101 + -0.0
62,102 - +0.2
62,102 - +0.2
62,102 - +0.2
62,226 + -1.1
62,376 + GFF6270 0.12 -0.0
62,377 - GFF6270 0.13 -0.0
62,377 - GFF6270 0.13 +1.2
62,691 + GFF6270 0.34 -0.1
62,691 + GFF6270 0.34 -0.0
62,692 - GFF6270 0.34 +0.6
62,692 - GFF6270 0.34 +0.7
62,692 - GFF6270 0.34 -1.4
62,736 + GFF6270 0.37 -2.3
62,737 - GFF6270 0.37 -0.6
62,820 + GFF6270 0.43 -0.7
62,820 + GFF6270 0.43 +0.4
62,821 - GFF6270 0.43 -0.3
62,821 - GFF6270 0.43 -1.4
62,821 - GFF6270 0.43 +0.3

Or see this region's nucleotide sequence