Strain Fitness in Variovorax sp. SCN45 around GFF6171

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6168 and GFF6169 overlap by 4 nucleotidesGFF6169 and GFF6170 overlap by 4 nucleotidesGFF6170 and GFF6171 overlap by 4 nucleotidesGFF6171 and GFF6172 are separated by 82 nucleotidesGFF6172 and GFF6173 overlap by 1 nucleotides GFF6168 - Na(+) H(+) antiporter subunit G, at 73,449 to 73,820 GFF6168 GFF6169 - Na(+) H(+) antiporter subunit F, at 73,817 to 74,095 GFF6169 GFF6170 - Na(+) H(+) antiporter subunit E, at 74,092 to 74,583 GFF6170 GFF6171 - Na(+) H(+) antiporter subunit D, at 74,580 to 76,298 GFF6171 GFF6172 - Na(+) H(+) antiporter subunit C, at 76,381 to 76,731 GFF6172 GFF6173 - Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B, at 76,731 to 79,679 GFF6173 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -2 -1 0 1at 73.637 kb on - strand, within GFF6168at 73.637 kb on - strand, within GFF6168at 73.908 kb on + strand, within GFF6169at 73.908 kb on + strand, within GFF6169at 73.908 kb on + strand, within GFF6169at 73.909 kb on - strand, within GFF6169at 73.909 kb on - strand, within GFF6169at 73.909 kb on - strand, within GFF6169at 73.909 kb on - strand, within GFF6169at 73.909 kb on - strand, within GFF6169at 73.909 kb on - strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.966 kb on - strand, within GFF6169at 73.966 kb on - strand, within GFF6169at 73.966 kb on - strand, within GFF6169at 73.966 kb on - strand, within GFF6169at 74.294 kb on - strand, within GFF6170at 74.378 kb on + strand, within GFF6170at 74.378 kb on + strand, within GFF6170at 74.379 kb on - strand, within GFF6170at 74.379 kb on - strand, within GFF6170at 74.379 kb on - strand, within GFF6170at 74.379 kb on - strand, within GFF6170at 74.379 kb on - strand, within GFF6170at 74.662 kb on + strandat 74.880 kb on + strand, within GFF6171at 74.880 kb on + strand, within GFF6171at 74.880 kb on + strand, within GFF6171at 74.881 kb on - strand, within GFF6171at 74.881 kb on - strand, within GFF6171at 74.881 kb on - strand, within GFF6171at 75.055 kb on + strand, within GFF6171at 75.235 kb on + strand, within GFF6171at 75.235 kb on + strand, within GFF6171at 75.235 kb on + strand, within GFF6171at 75.235 kb on + strand, within GFF6171at 75.236 kb on - strand, within GFF6171at 75.236 kb on - strand, within GFF6171at 75.472 kb on + strand, within GFF6171at 75.472 kb on + strand, within GFF6171at 75.472 kb on + strand, within GFF6171at 75.472 kb on + strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.532 kb on + strand, within GFF6171at 75.532 kb on + strand, within GFF6171at 75.532 kb on + strand, within GFF6171at 75.681 kb on - strand, within GFF6171at 75.681 kb on - strand, within GFF6171at 75.694 kb on + strand, within GFF6171at 75.695 kb on - strand, within GFF6171at 75.695 kb on - strand, within GFF6171at 75.695 kb on - strand, within GFF6171at 75.751 kb on + strand, within GFF6171at 75.751 kb on + strand, within GFF6171at 75.751 kb on + strand, within GFF6171at 75.752 kb on - strand, within GFF6171at 75.752 kb on - strand, within GFF6171at 75.752 kb on - strand, within GFF6171at 75.752 kb on - strand, within GFF6171at 75.804 kb on + strand, within GFF6171at 75.805 kb on + strand, within GFF6171at 75.806 kb on - strand, within GFF6171at 75.946 kb on + strand, within GFF6171at 75.946 kb on + strand, within GFF6171at 75.946 kb on + strand, within GFF6171at 75.946 kb on + strand, within GFF6171at 75.946 kb on + strand, within GFF6171at 75.947 kb on - strand, within GFF6171at 75.947 kb on - strand, within GFF6171at 75.947 kb on - strand, within GFF6171at 75.947 kb on - strand, within GFF6171at 75.947 kb on - strand, within GFF6171at 76.054 kb on + strand, within GFF6171at 76.054 kb on + strand, within GFF6171at 76.055 kb on - strand, within GFF6171at 76.055 kb on - strand, within GFF6171at 76.623 kb on - strand, within GFF6172at 76.655 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.727 kb on + strandat 76.811 kb on + strandat 77.038 kb on + strand, within GFF6173at 77.038 kb on + strand, within GFF6173at 77.038 kb on + strand, within GFF6173at 77.038 kb on + strand, within GFF6173at 77.039 kb on - strand, within GFF6173at 77.164 kb on + strand, within GFF6173at 77.164 kb on + strand, within GFF6173at 77.164 kb on + strand, within GFF6173at 77.164 kb on + strand, within GFF6173at 77.164 kb on + strand, within GFF6173at 77.227 kb on + strand, within GFF6173at 77.228 kb on - strand, within GFF6173at 77.228 kb on - strand, within GFF6173

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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73,637 - GFF6168 0.51 -0.1
73,637 - GFF6168 0.51 -0.2
73,908 + GFF6169 0.33 +0.5
73,908 + GFF6169 0.33 -1.7
73,908 + GFF6169 0.33 +0.3
73,909 - GFF6169 0.33 -1.0
73,909 - GFF6169 0.33 +1.4
73,909 - GFF6169 0.33 -0.5
73,909 - GFF6169 0.33 +0.2
73,909 - GFF6169 0.33 -0.1
73,909 - GFF6169 0.33 -0.3
73,965 + GFF6169 0.53 -0.1
73,965 + GFF6169 0.53 -0.2
73,965 + GFF6169 0.53 -0.2
73,965 + GFF6169 0.53 +0.8
73,965 + GFF6169 0.53 +0.6
73,965 + GFF6169 0.53 -0.3
73,965 + GFF6169 0.53 -0.0
73,965 + GFF6169 0.53 +1.0
73,965 + GFF6169 0.53 +0.8
73,966 - GFF6169 0.53 +0.3
73,966 - GFF6169 0.53 +0.4
73,966 - GFF6169 0.53 +0.2
73,966 - GFF6169 0.53 -0.0
74,294 - GFF6170 0.41 -0.3
74,378 + GFF6170 0.58 +0.3
74,378 + GFF6170 0.58 +0.4
74,379 - GFF6170 0.58 -0.1
74,379 - GFF6170 0.58 -0.3
74,379 - GFF6170 0.58 -0.1
74,379 - GFF6170 0.58 -0.1
74,379 - GFF6170 0.58 +0.0
74,662 + -0.9
74,880 + GFF6171 0.17 +0.6
74,880 + GFF6171 0.17 +0.2
74,880 + GFF6171 0.17 +0.2
74,881 - GFF6171 0.18 -0.5
74,881 - GFF6171 0.18 -0.0
74,881 - GFF6171 0.18 +0.8
75,055 + GFF6171 0.28 -0.0
75,235 + GFF6171 0.38 +0.5
75,235 + GFF6171 0.38 -0.8
75,235 + GFF6171 0.38 -0.6
75,235 + GFF6171 0.38 +0.5
75,236 - GFF6171 0.38 +0.2
75,236 - GFF6171 0.38 -0.2
75,472 + GFF6171 0.52 +0.5
75,472 + GFF6171 0.52 +0.6
75,472 + GFF6171 0.52 -0.1
75,472 + GFF6171 0.52 -0.1
75,473 - GFF6171 0.52 -0.1
75,473 - GFF6171 0.52 +0.1
75,473 - GFF6171 0.52 -0.5
75,473 - GFF6171 0.52 -0.3
75,473 - GFF6171 0.52 -0.3
75,532 + GFF6171 0.55 -0.7
75,532 + GFF6171 0.55 +0.0
75,532 + GFF6171 0.55 +0.2
75,681 - GFF6171 0.64 -0.4
75,681 - GFF6171 0.64 -0.2
75,694 + GFF6171 0.65 -0.3
75,695 - GFF6171 0.65 -0.6
75,695 - GFF6171 0.65 +1.2
75,695 - GFF6171 0.65 -0.0
75,751 + GFF6171 0.68 -0.5
75,751 + GFF6171 0.68 -0.3
75,751 + GFF6171 0.68 -1.0
75,752 - GFF6171 0.68 -0.2
75,752 - GFF6171 0.68 -0.1
75,752 - GFF6171 0.68 -0.4
75,752 - GFF6171 0.68 -1.9
75,804 + GFF6171 0.71 -0.3
75,805 + GFF6171 0.71 -0.5
75,806 - GFF6171 0.71 -0.3
75,946 + GFF6171 0.79 -0.5
75,946 + GFF6171 0.79 +0.3
75,946 + GFF6171 0.79 +0.8
75,946 + GFF6171 0.79 -0.3
75,946 + GFF6171 0.79 +0.8
75,947 - GFF6171 0.80 +1.2
75,947 - GFF6171 0.80 -0.4
75,947 - GFF6171 0.80 -0.3
75,947 - GFF6171 0.80 +0.3
75,947 - GFF6171 0.80 +0.7
76,054 + GFF6171 0.86 -1.3
76,054 + GFF6171 0.86 -1.3
76,055 - GFF6171 0.86 +0.5
76,055 - GFF6171 0.86 +0.8
76,623 - GFF6172 0.69 -1.4
76,655 + GFF6172 0.78 -0.0
76,679 + GFF6172 0.85 +0.9
76,679 + GFF6172 0.85 -0.5
76,679 + GFF6172 0.85 -0.1
76,679 + GFF6172 0.85 -0.9
76,679 + GFF6172 0.85 +0.4
76,679 + GFF6172 0.85 -0.9
76,679 + GFF6172 0.85 -0.0
76,679 + GFF6172 0.85 +1.0
76,679 + GFF6172 0.85 -0.0
76,680 - GFF6172 0.85 -1.1
76,680 - GFF6172 0.85 +0.1
76,680 - GFF6172 0.85 -0.4
76,680 - GFF6172 0.85 -1.1
76,680 - GFF6172 0.85 +0.1
76,680 - GFF6172 0.85 +0.0
76,680 - GFF6172 0.85 -0.5
76,680 - GFF6172 0.85 -0.2
76,680 - GFF6172 0.85 -0.0
76,727 + -0.1
76,811 + -0.5
77,038 + GFF6173 0.10 -1.0
77,038 + GFF6173 0.10 +0.3
77,038 + GFF6173 0.10 -0.2
77,038 + GFF6173 0.10 -0.3
77,039 - GFF6173 0.10 -0.8
77,164 + GFF6173 0.15 +0.0
77,164 + GFF6173 0.15 +0.8
77,164 + GFF6173 0.15 -0.6
77,164 + GFF6173 0.15 -0.4
77,164 + GFF6173 0.15 -0.4
77,227 + GFF6173 0.17 -0.0
77,228 - GFF6173 0.17 +0.5
77,228 - GFF6173 0.17 +0.0

Or see this region's nucleotide sequence