Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6127 and GFF6128 are separated by 228 nucleotides GFF6128 and GFF6129 overlap by 4 nucleotides GFF6129 and GFF6130 are separated by 22 nucleotides
GFF6127 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 28,139 to 29,281
GFF6127
GFF6128 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 29,510 to 29,776
GFF6128
GFF6129 - (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10), at 29,773 to 30,696
GFF6129
GFF6130 - 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7), at 30,719 to 32,572
GFF6130
Position (kb) 29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 28.869 kb on + strand, within GFF6127 at 28.870 kb on - strand, within GFF6127 at 28.953 kb on + strand, within GFF6127 at 28.953 kb on + strand, within GFF6127 at 28.954 kb on - strand, within GFF6127 at 28.954 kb on - strand, within GFF6127 at 29.163 kb on + strand, within GFF6127 at 29.164 kb on - strand, within GFF6127 at 29.164 kb on - strand, within GFF6127 at 29.205 kb on + strand at 29.205 kb on + strand at 29.205 kb on + strand at 29.205 kb on + strand at 29.205 kb on + strand at 29.206 kb on - strand at 29.206 kb on - strand at 29.270 kb on + strand at 29.270 kb on + strand at 29.271 kb on - strand at 29.271 kb on - strand at 29.400 kb on + strand at 29.401 kb on - strand at 29.478 kb on - strand at 29.478 kb on - strand at 29.561 kb on - strand, within GFF6128 at 29.582 kb on + strand, within GFF6128 at 29.666 kb on + strand, within GFF6128 at 29.666 kb on + strand, within GFF6128 at 29.667 kb on - strand, within GFF6128 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.554 kb on + strand, within GFF6129 at 30.555 kb on - strand, within GFF6129 at 30.555 kb on - strand, within GFF6129
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 28,869 + GFF6127 0.64 -1.7 28,870 - GFF6127 0.64 -0.3 28,953 + GFF6127 0.71 +0.4 28,953 + GFF6127 0.71 -0.1 28,954 - GFF6127 0.71 +0.6 28,954 - GFF6127 0.71 +2.6 29,163 + GFF6127 0.90 -0.7 29,164 - GFF6127 0.90 +0.4 29,164 - GFF6127 0.90 -0.1 29,205 + -1.2 29,205 + -0.0 29,205 + -0.0 29,205 + -1.7 29,205 + -0.2 29,206 - -0.2 29,206 - +1.0 29,270 + +0.3 29,270 + -0.2 29,271 - +0.1 29,271 - -1.0 29,400 + +0.2 29,401 - +0.5 29,478 - -0.1 29,478 - -0.2 29,561 - GFF6128 0.19 -0.0 29,582 + GFF6128 0.27 -1.3 29,666 + GFF6128 0.58 +0.8 29,666 + GFF6128 0.58 -1.2 29,667 - GFF6128 0.59 -0.3 30,550 + GFF6129 0.84 -2.3 30,550 + GFF6129 0.84 +0.4 30,550 + GFF6129 0.84 -1.2 30,550 + GFF6129 0.84 -0.6 30,550 + GFF6129 0.84 -0.4 30,550 + GFF6129 0.84 -0.0 30,550 + GFF6129 0.84 -0.7 30,550 + GFF6129 0.84 -0.4 30,550 + GFF6129 0.84 -0.6 30,550 + GFF6129 0.84 -1.3 30,550 + GFF6129 0.84 -0.4 30,550 + GFF6129 0.84 -0.5 30,551 - GFF6129 0.84 -0.7 30,551 - GFF6129 0.84 -3.1 30,551 - GFF6129 0.84 -0.2 30,551 - GFF6129 0.84 -1.0 30,551 - GFF6129 0.84 -0.0 30,551 - GFF6129 0.84 -1.9 30,551 - GFF6129 0.84 -0.7 30,551 - GFF6129 0.84 -0.9 30,551 - GFF6129 0.84 +0.1 30,551 - GFF6129 0.84 -1.2 30,551 - GFF6129 0.84 -0.2 30,554 + GFF6129 0.85 -1.1 30,555 - GFF6129 0.85 +0.6 30,555 - GFF6129 0.85 -2.9
Or see this region's nucleotide sequence