Strain Fitness in Variovorax sp. SCN45 around GFF5989

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5988 and GFF5989 are separated by 12 nucleotidesGFF5989 and GFF5990 are separated by 13 nucleotides GFF5988 - Sensory histidine kinase BaeS, at 41,553 to 43,034 GFF5988 GFF5989 - RND efflux system, membrane fusion protein, at 43,047 to 44,291 GFF5989 GFF5990 - RND efflux system, inner membrane transporter, at 44,305 to 47,442 GFF5990 Position (kb) 43 44 45Strain fitness (log2 ratio) -2 -1 0 1at 42.957 kb on - strandat 42.957 kb on - strandat 43.398 kb on + strand, within GFF5989at 43.398 kb on + strand, within GFF5989at 43.398 kb on + strand, within GFF5989at 43.398 kb on + strand, within GFF5989at 43.399 kb on - strand, within GFF5989at 43.980 kb on + strand, within GFF5989at 43.980 kb on + strand, within GFF5989at 43.980 kb on + strand, within GFF5989at 43.980 kb on + strand, within GFF5989at 43.980 kb on + strand, within GFF5989at 43.981 kb on - strand, within GFF5989at 43.981 kb on - strand, within GFF5989at 44.249 kb on + strandat 44.250 kb on - strandat 44.773 kb on + strand, within GFF5990at 44.774 kb on - strand, within GFF5990at 44.774 kb on - strand, within GFF5990at 44.774 kb on - strand, within GFF5990at 45.130 kb on + strand, within GFF5990

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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42,957 - +0.5
42,957 - -0.7
43,398 + GFF5989 0.28 -0.1
43,398 + GFF5989 0.28 -1.3
43,398 + GFF5989 0.28 -1.5
43,398 + GFF5989 0.28 -0.8
43,399 - GFF5989 0.28 +0.5
43,980 + GFF5989 0.75 +0.4
43,980 + GFF5989 0.75 -0.6
43,980 + GFF5989 0.75 +0.6
43,980 + GFF5989 0.75 -0.2
43,980 + GFF5989 0.75 -0.9
43,981 - GFF5989 0.75 +0.6
43,981 - GFF5989 0.75 -0.7
44,249 + +1.1
44,250 - -0.1
44,773 + GFF5990 0.15 +0.2
44,774 - GFF5990 0.15 +1.1
44,774 - GFF5990 0.15 +0.5
44,774 - GFF5990 0.15 +1.6
45,130 + GFF5990 0.26 -1.8

Or see this region's nucleotide sequence