Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5752 and GFF5753 are separated by 173 nucleotides GFF5753 and GFF5754 are separated by 66 nucleotides GFF5754 and GFF5755 are separated by 40 nucleotides GFF5755 and GFF5756 are separated by 40 nucleotides GFF5756 and GFF5757 are separated by 29 nucleotides
GFF5752 - Flagellin FliC, at 125,150 to 126,805
GFF5752
GFF5753 - Flagellar protein FlaG, at 126,979 to 127,335
GFF5753
GFF5754 - Flagellar cap protein FliD, at 127,402 to 128,847
GFF5754
GFF5755 - Flagellar biosynthesis protein FliS, at 128,888 to 129,307
GFF5755
GFF5756 - KEGG: flagellar protein FliT, at 129,348 to 129,680
GFF5756
GFF5757 - hypothetical protein, at 129,710 to 131,014
GFF5757
Position (kb) 127
128
129 Strain fitness (log2 ratio) -2
-1
0
1
2 at 126.449 kb on + strand, within GFF5752 at 126.449 kb on + strand, within GFF5752 at 126.450 kb on - strand, within GFF5752 at 126.476 kb on + strand, within GFF5752 at 126.476 kb on + strand, within GFF5752 at 126.476 kb on + strand, within GFF5752 at 126.476 kb on + strand, within GFF5752 at 126.477 kb on - strand, within GFF5752 at 126.745 kb on + strand at 126.745 kb on + strand at 126.746 kb on - strand at 126.746 kb on - strand at 126.824 kb on + strand at 126.824 kb on + strand at 126.825 kb on - strand at 127.380 kb on + strand at 127.381 kb on - strand at 127.381 kb on - strand at 127.439 kb on + strand at 127.519 kb on + strand at 127.519 kb on + strand at 127.520 kb on - strand at 127.520 kb on - strand at 127.520 kb on - strand at 127.520 kb on - strand at 127.520 kb on - strand at 127.520 kb on - strand at 127.540 kb on + strand at 127.687 kb on + strand, within GFF5754 at 127.688 kb on - strand, within GFF5754 at 127.688 kb on - strand, within GFF5754 at 127.688 kb on - strand, within GFF5754 at 128.300 kb on - strand, within GFF5754 at 128.300 kb on - strand, within GFF5754 at 128.300 kb on - strand, within GFF5754 at 128.339 kb on - strand, within GFF5754 at 128.597 kb on - strand, within GFF5754 at 128.698 kb on + strand, within GFF5754 at 128.698 kb on + strand, within GFF5754 at 128.800 kb on + strand at 128.801 kb on - strand at 128.845 kb on + strand at 128.845 kb on + strand at 128.846 kb on - strand at 128.846 kb on - strand at 128.891 kb on + strand at 128.891 kb on + strand at 128.891 kb on + strand at 128.891 kb on + strand at 128.891 kb on + strand at 128.892 kb on - strand at 128.892 kb on - strand at 128.892 kb on - strand at 128.892 kb on - strand at 128.892 kb on - strand at 128.892 kb on - strand at 128.892 kb on - strand at 128.892 kb on - strand at 128.892 kb on - strand at 129.176 kb on + strand, within GFF5755 at 129.177 kb on - strand, within GFF5755 at 129.177 kb on - strand, within GFF5755 at 129.182 kb on + strand, within GFF5755 at 129.182 kb on + strand, within GFF5755 at 129.182 kb on + strand, within GFF5755 at 129.182 kb on + strand, within GFF5755 at 129.183 kb on - strand, within GFF5755 at 129.183 kb on - strand, within GFF5755 at 129.183 kb on - strand, within GFF5755 at 129.353 kb on - strand at 129.353 kb on - strand at 129.379 kb on - strand at 129.630 kb on + strand, within GFF5756 at 129.631 kb on - strand, within GFF5756 at 129.631 kb on - strand, within GFF5756 at 129.631 kb on - strand, within GFF5756 at 129.631 kb on - strand, within GFF5756 at 129.631 kb on - strand, within GFF5756 at 129.664 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 126,449 + GFF5752 0.78 -0.4 126,449 + GFF5752 0.78 +0.2 126,450 - GFF5752 0.79 -0.7 126,476 + GFF5752 0.80 +0.1 126,476 + GFF5752 0.80 -0.8 126,476 + GFF5752 0.80 -0.5 126,476 + GFF5752 0.80 -0.6 126,477 - GFF5752 0.80 -0.9 126,745 + -0.6 126,745 + +0.2 126,746 - -0.9 126,746 - +0.4 126,824 + -0.7 126,824 + +1.0 126,825 - +0.5 127,380 + +0.7 127,381 - -0.5 127,381 - +2.0 127,439 + -0.2 127,519 + -0.3 127,519 + -0.1 127,520 - +0.0 127,520 - +0.0 127,520 - -0.3 127,520 - -1.1 127,520 - -0.0 127,520 - -1.1 127,540 + +0.1 127,687 + GFF5754 0.20 +1.0 127,688 - GFF5754 0.20 -0.2 127,688 - GFF5754 0.20 -0.1 127,688 - GFF5754 0.20 +0.3 128,300 - GFF5754 0.62 +1.1 128,300 - GFF5754 0.62 -0.1 128,300 - GFF5754 0.62 -0.4 128,339 - GFF5754 0.65 -0.5 128,597 - GFF5754 0.83 -0.9 128,698 + GFF5754 0.90 +1.3 128,698 + GFF5754 0.90 -0.1 128,800 + -0.9 128,801 - -1.5 128,845 + -0.7 128,845 + +0.3 128,846 - +1.4 128,846 - +0.1 128,891 + -0.8 128,891 + -1.9 128,891 + -0.3 128,891 + -0.5 128,891 + -1.2 128,892 - -0.1 128,892 - +0.1 128,892 - +0.7 128,892 - -0.3 128,892 - +0.3 128,892 - +0.4 128,892 - +0.2 128,892 - -1.1 128,892 - -1.3 129,176 + GFF5755 0.69 -1.5 129,177 - GFF5755 0.69 +0.7 129,177 - GFF5755 0.69 -0.3 129,182 + GFF5755 0.70 -1.3 129,182 + GFF5755 0.70 -0.3 129,182 + GFF5755 0.70 -0.5 129,182 + GFF5755 0.70 -0.8 129,183 - GFF5755 0.70 -1.3 129,183 - GFF5755 0.70 -0.6 129,183 - GFF5755 0.70 -0.9 129,353 - -0.6 129,353 - +0.2 129,379 - -0.2 129,630 + GFF5756 0.85 +0.4 129,631 - GFF5756 0.85 -1.1 129,631 - GFF5756 0.85 +0.7 129,631 - GFF5756 0.85 -0.5 129,631 - GFF5756 0.85 +0.3 129,631 - GFF5756 0.85 -1.6 129,664 - +0.0
Or see this region's nucleotide sequence