Strain Fitness in Variovorax sp. SCN45 around GFF5457

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5456 and GFF5457 are separated by 178 nucleotidesGFF5457 and GFF5458 are separated by 28 nucleotides GFF5456 - L-threonate/D-erythronate transcriptional regulator, GntR family, at 86,941 to 87,717 GFF5456 GFF5457 - L-threonate dehydrogenase (NAD+), at 87,896 to 88,768 GFF5457 GFF5458 - D-erythronate dehydrogenase (NAD+), at 88,797 to 89,813 GFF5458 Position (kb) 87 88 89Strain fitness (log2 ratio) -1 0 1 2at 86.910 kb on + strandat 86.911 kb on - strandat 86.911 kb on - strandat 87.166 kb on + strand, within GFF5456at 87.166 kb on + strand, within GFF5456at 87.166 kb on + strand, within GFF5456at 87.166 kb on + strand, within GFF5456at 87.166 kb on + strand, within GFF5456at 87.166 kb on + strand, within GFF5456at 87.167 kb on - strand, within GFF5456at 87.167 kb on - strand, within GFF5456at 87.167 kb on - strand, within GFF5456at 87.167 kb on - strand, within GFF5456at 87.167 kb on - strand, within GFF5456at 87.167 kb on - strand, within GFF5456at 87.167 kb on - strand, within GFF5456at 87.167 kb on - strand, within GFF5456at 87.167 kb on - strand, within GFF5456at 87.300 kb on + strand, within GFF5456at 87.301 kb on - strand, within GFF5456at 87.301 kb on - strand, within GFF5456at 87.451 kb on + strand, within GFF5456at 87.451 kb on + strand, within GFF5456at 87.451 kb on + strand, within GFF5456at 87.451 kb on + strand, within GFF5456at 87.451 kb on + strand, within GFF5456at 87.451 kb on + strand, within GFF5456at 87.452 kb on - strand, within GFF5456at 87.452 kb on - strand, within GFF5456at 87.452 kb on - strand, within GFF5456at 87.452 kb on - strand, within GFF5456at 87.452 kb on - strand, within GFF5456at 87.452 kb on - strand, within GFF5456at 87.777 kb on - strandat 87.777 kb on - strandat 87.777 kb on - strandat 87.787 kb on + strandat 87.788 kb on - strandat 87.788 kb on - strandat 88.217 kb on + strand, within GFF5457at 88.217 kb on + strand, within GFF5457at 88.346 kb on + strand, within GFF5457at 88.347 kb on - strand, within GFF5457at 88.481 kb on + strand, within GFF5457at 88.481 kb on + strand, within GFF5457at 88.481 kb on + strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.556 kb on + strand, within GFF5457at 88.556 kb on + strand, within GFF5457at 88.557 kb on - strand, within GFF5457at 88.557 kb on - strand, within GFF5457at 88.557 kb on - strand, within GFF5457at 88.557 kb on - strand, within GFF5457at 88.691 kb on + strandat 88.692 kb on - strandat 89.263 kb on - strand, within GFF5458at 89.263 kb on - strand, within GFF5458at 89.263 kb on - strand, within GFF5458at 89.764 kb on - strandat 89.764 kb on - strandat 89.764 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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86,910 + -0.2
86,911 - -1.3
86,911 - +0.4
87,166 + GFF5456 0.29 +0.2
87,166 + GFF5456 0.29 +0.4
87,166 + GFF5456 0.29 +0.0
87,166 + GFF5456 0.29 +0.1
87,166 + GFF5456 0.29 -0.7
87,166 + GFF5456 0.29 +0.3
87,167 - GFF5456 0.29 +0.4
87,167 - GFF5456 0.29 +0.1
87,167 - GFF5456 0.29 +0.1
87,167 - GFF5456 0.29 +0.2
87,167 - GFF5456 0.29 -0.4
87,167 - GFF5456 0.29 -0.2
87,167 - GFF5456 0.29 -1.6
87,167 - GFF5456 0.29 +0.5
87,167 - GFF5456 0.29 -0.4
87,300 + GFF5456 0.46 +0.3
87,301 - GFF5456 0.46 -0.2
87,301 - GFF5456 0.46 -1.2
87,451 + GFF5456 0.66 +0.5
87,451 + GFF5456 0.66 -0.5
87,451 + GFF5456 0.66 +0.7
87,451 + GFF5456 0.66 +0.4
87,451 + GFF5456 0.66 +1.8
87,451 + GFF5456 0.66 -0.3
87,452 - GFF5456 0.66 -0.1
87,452 - GFF5456 0.66 -0.1
87,452 - GFF5456 0.66 +1.4
87,452 - GFF5456 0.66 +0.4
87,452 - GFF5456 0.66 -0.2
87,452 - GFF5456 0.66 -1.0
87,777 - -0.1
87,777 - +0.3
87,777 - -0.4
87,787 + -0.5
87,788 - -0.7
87,788 - -1.7
88,217 + GFF5457 0.37 -0.5
88,217 + GFF5457 0.37 -0.1
88,346 + GFF5457 0.52 +0.0
88,347 - GFF5457 0.52 +0.1
88,481 + GFF5457 0.67 -0.6
88,481 + GFF5457 0.67 +1.2
88,481 + GFF5457 0.67 -0.5
88,482 - GFF5457 0.67 -0.2
88,482 - GFF5457 0.67 +0.5
88,482 - GFF5457 0.67 +0.2
88,482 - GFF5457 0.67 -0.5
88,482 - GFF5457 0.67 -0.1
88,482 - GFF5457 0.67 -0.1
88,482 - GFF5457 0.67 +0.1
88,482 - GFF5457 0.67 +0.3
88,482 - GFF5457 0.67 -0.2
88,556 + GFF5457 0.76 +0.2
88,556 + GFF5457 0.76 -0.2
88,557 - GFF5457 0.76 +0.3
88,557 - GFF5457 0.76 -0.0
88,557 - GFF5457 0.76 -0.4
88,557 - GFF5457 0.76 +0.0
88,691 + +0.4
88,692 - -0.3
89,263 - GFF5458 0.46 -0.6
89,263 - GFF5458 0.46 -0.2
89,263 - GFF5458 0.46 -0.0
89,764 - -0.4
89,764 - -0.3
89,764 - -0.4

Or see this region's nucleotide sequence